Difference between revisions of "NONHSAT124692"

From LncRNAWiki
Jump to: navigation, search
(Created page with "Please input one-sentence summary here. ==Annotated Information== ===Transcriptomic Nomeclature=== Please input transcriptomic nomeclature information here. ===Functio...")
 
Line 42: Line 42:
 
sequence = <dnaseq>AATTTTTTAATGAACCAGTGAGTGTTGTTTCAAAGCCAACACATATATTCTAATTATTTCTTCATGCCAAGAAGCTGGAAGTACTTTATAGCAATTGGCTCCATTCCTGACAGTTATTGGGATTTAACAGCTTTATTGGCTGGGGGAGGAACACATGAACTCCTAAGGGCTAATACAAGCATTTGGGAAATTATCTGTTGTCTGGCGTCAGCACTGGAACAGGGCAGCAGAGCTGGAGAGTAAGAAGCAGAGCTGGAGAGGAAGAAGTGTTTGCTAAGTCACCGCGCAGGAGGAGACAGAATCAGAGGTGACGAATGTAAGTCCACCCATTGGCTTAAGATCCAGTATCCTGAGTGAGTTGCACAGATCCTCTCCTTCAGTCCTCTCAGGTAGGTGCAGTGGTGTCTCCctggagcacagagaggccaagtatctggctccaaatcacaagacttgcagagggtaaggctggtgtctaaggtcccatcagttgaactccaaagCAGGCTGTCTAGAAATTGGGTTCAGAGACCTCCCAGCCTGGAACCCAGTTTGATGGAGTCCCGCATTCAGGGGCCAGTAAACCACTGTACCCTGGACAACTCCATAAGCTTCGGTTATATTTTTAGGGCGGTTTTGCATGTTGAAATATTTGCATGCTTCGAGTCTACCATGCATGATCAGGCTGTCCCTGACCAGGGGAAAATTTACATAGTAAAATAGTATTACCCTTGAAATAGATTTAAGATAGGTCCTCCTTTTTCTTGACAGTATTACAACCCAGTTCAATTTCAGGAACTCTAGAGGTCCCTGCAGTTATGAAGAACTAATTAAAGGCATGAAATGTTCCTCTGCAAGTTTCATTGACCATATTGGGCCTACAGTCCATTTCCAAATAAATATCTAAGGTAAGAAAAATATGGGACTCCCCACAGACTACTTATCTACCAGATGGTGTGGGGTTTGGATGGATGTTTTCAGTTACTTCAGCAattttttcattaattcagtatttattgagaacctaatgtatgccaagcttgtaaaatgcagtggggggtatgacctattcccaggtctctggactctggcagaatggtagagaagaTGCTGTCGGGCTTGCATGTTCAGAACACCGTGTCTTAGGTGACCTCCCGGGCCTTTGGAGGCCCAACCCCAGGGTGGCGGGATAGCCAGGTGAGGCTTTGTTTGGCCTGTTCACGTTTCTCTGGAAAAGAATGGGGGTAGTTAggccaggcgcggtggctcatgcctgtaatcccagcactttgggaggccaagacaggtggatcacttgaggtcaggagatcgagaccagcctggccaatgtacagtgaaaccctgtctctactaaaaatacaaaatttagctgg</dnaseq>|
 
sequence = <dnaseq>AATTTTTTAATGAACCAGTGAGTGTTGTTTCAAAGCCAACACATATATTCTAATTATTTCTTCATGCCAAGAAGCTGGAAGTACTTTATAGCAATTGGCTCCATTCCTGACAGTTATTGGGATTTAACAGCTTTATTGGCTGGGGGAGGAACACATGAACTCCTAAGGGCTAATACAAGCATTTGGGAAATTATCTGTTGTCTGGCGTCAGCACTGGAACAGGGCAGCAGAGCTGGAGAGTAAGAAGCAGAGCTGGAGAGGAAGAAGTGTTTGCTAAGTCACCGCGCAGGAGGAGACAGAATCAGAGGTGACGAATGTAAGTCCACCCATTGGCTTAAGATCCAGTATCCTGAGTGAGTTGCACAGATCCTCTCCTTCAGTCCTCTCAGGTAGGTGCAGTGGTGTCTCCctggagcacagagaggccaagtatctggctccaaatcacaagacttgcagagggtaaggctggtgtctaaggtcccatcagttgaactccaaagCAGGCTGTCTAGAAATTGGGTTCAGAGACCTCCCAGCCTGGAACCCAGTTTGATGGAGTCCCGCATTCAGGGGCCAGTAAACCACTGTACCCTGGACAACTCCATAAGCTTCGGTTATATTTTTAGGGCGGTTTTGCATGTTGAAATATTTGCATGCTTCGAGTCTACCATGCATGATCAGGCTGTCCCTGACCAGGGGAAAATTTACATAGTAAAATAGTATTACCCTTGAAATAGATTTAAGATAGGTCCTCCTTTTTCTTGACAGTATTACAACCCAGTTCAATTTCAGGAACTCTAGAGGTCCCTGCAGTTATGAAGAACTAATTAAAGGCATGAAATGTTCCTCTGCAAGTTTCATTGACCATATTGGGCCTACAGTCCATTTCCAAATAAATATCTAAGGTAAGAAAAATATGGGACTCCCCACAGACTACTTATCTACCAGATGGTGTGGGGTTTGGATGGATGTTTTCAGTTACTTCAGCAattttttcattaattcagtatttattgagaacctaatgtatgccaagcttgtaaaatgcagtggggggtatgacctattcccaggtctctggactctggcagaatggtagagaagaTGCTGTCGGGCTTGCATGTTCAGAACACCGTGTCTTAGGTGACCTCCCGGGCCTTTGGAGGCCCAACCCCAGGGTGGCGGGATAGCCAGGTGAGGCTTTGTTTGGCCTGTTCACGTTTCTCTGGAAAAGAATGGGGGTAGTTAggccaggcgcggtggctcatgcctgtaatcccagcactttgggaggccaagacaggtggatcacttgaggtcaggagatcgagaccagcctggccaatgtacagtgaaaccctgtctctactaaaaatacaaaatttagctgg</dnaseq>|
 
}}
 
}}
[[Category:Intergenic]]
+
[[Category:Intergenic]][[Category:NONHSAG049372]]

Revision as of 08:54, 13 October 2014

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT124692

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1394 nt

Genomic location

chr8+:1919296..1920689

Exon number

1

Exons

1919296..1920689

Genome context

Sequence
000001 AATTTTTTAA TGAACCAGTG AGTGTTGTTT CAAAGCCAAC ACATATATTC TAATTATTTC TTCATGCCAA GAAGCTGGAA 000080
000081 GTACTTTATA GCAATTGGCT CCATTCCTGA CAGTTATTGG GATTTAACAG CTTTATTGGC TGGGGGAGGA ACACATGAAC 000160
000161 TCCTAAGGGC TAATACAAGC ATTTGGGAAA TTATCTGTTG TCTGGCGTCA GCACTGGAAC AGGGCAGCAG AGCTGGAGAG 000240
000241 TAAGAAGCAG AGCTGGAGAG GAAGAAGTGT TTGCTAAGTC ACCGCGCAGG AGGAGACAGA ATCAGAGGTG ACGAATGTAA 000320
000321 GTCCACCCAT TGGCTTAAGA TCCAGTATCC TGAGTGAGTT GCACAGATCC TCTCCTTCAG TCCTCTCAGG TAGGTGCAGT 000400
000401 GGTGTCTCCc tggagcacag agaggccaag tatctggctc caaatcacaa gacttgcaga gggtaaggct ggtgtctaag 000480
000481 gtcccatcag ttgaactcca aagCAGGCTG TCTAGAAATT GGGTTCAGAG ACCTCCCAGC CTGGAACCCA GTTTGATGGA 000560
000561 GTCCCGCATT CAGGGGCCAG TAAACCACTG TACCCTGGAC AACTCCATAA GCTTCGGTTA TATTTTTAGG GCGGTTTTGC 000640
000641 ATGTTGAAAT ATTTGCATGC TTCGAGTCTA CCATGCATGA TCAGGCTGTC CCTGACCAGG GGAAAATTTA CATAGTAAAA 000720
000721 TAGTATTACC CTTGAAATAG ATTTAAGATA GGTCCTCCTT TTTCTTGACA GTATTACAAC CCAGTTCAAT TTCAGGAACT 000800
000801 CTAGAGGTCC CTGCAGTTAT GAAGAACTAA TTAAAGGCAT GAAATGTTCC TCTGCAAGTT TCATTGACCA TATTGGGCCT 000880
000881 ACAGTCCATT TCCAAATAAA TATCTAAGGT AAGAAAAATA TGGGACTCCC CACAGACTAC TTATCTACCA GATGGTGTGG 000960
000961 GGTTTGGATG GATGTTTTCA GTTACTTCAG CAattttttc attaattcag tatttattga gaacctaatg tatgccaagc 001040
001041 ttgtaaaatg cagtgggggg tatgacctat tcccaggtct ctggactctg gcagaatggt agagaagaTG CTGTCGGGCT 001120
001121 TGCATGTTCA GAACACCGTG TCTTAGGTGA CCTCCCGGGC CTTTGGAGGC CCAACCCCAG GGTGGCGGGA TAGCCAGGTG 001200
001201 AGGCTTTGTT TGGCCTGTTC ACGTTTCTCT GGAAAAGAAT GGGGGTAGTT Aggccaggcg cggtggctca tgcctgtaat 001280
001281 cccagcactt tgggaggcca agacaggtgg atcacttgag gtcaggagat cgagaccagc ctggccaatg tacagtgaaa 001360
001361 ccctgtctct actaaaaata caaaatttag ctgg
[back to top]

Predicted Small Protein

Name NONHSAT124692_smProtein_1061:1192
Length 44
Molecular weight 4694.2306
Aromaticity 0.0697674418605
Instability index 41.3255813953
Isoelectric point 6.51568603516
Runs 8
Runs residual 0.0287431408414
Runs probability 0.0285947712419
Amino acid sequence MTYSQVSGLWQNGREDAVGLACSEHRVLGDLPGLWRPNPRVAG
Secondary structure LLEEEELLLLLLLLHHHHEELLLLLEELLLLLLLLLLLLLLLL
PRMN -
PiMo -