Difference between revisions of "NONHSAT059131"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>tggctattgtcattcaggatatagctgatacgtggtaccagttgctggaacacacagattcgggaatcaagggtagatacaggattggtccctctcaccatcactctcagtgatccactagcaCCAAGGTGAAAGAATGTCTAACATTCAGAAAATACACTCAAGAATAGGTCTGAAATCCAGGAGAATGTCTCTTGGTGCCATGGGCCCTtgtagcaagcatggcctgaaaaagcgaagtcacctgagggctcagacccccagggatatcaataagtgtcaacccatcaggcaagcaacctggaacagcccaaatgctgaaaatgaggaaaatcctgaatagaggctggagaaggaagacaatgaacagcaacgtcagcccctggatttacagcagcagggagcagggttgtagctccttctgttaactttcttGTATGAAATCTTTTTGCTAGATGTCTGGCTACCACCTTGAAGACCCAGTAACAGAATGGACTTAATGAATGTGGGGCATGGGTGGATCAGAGTGGTGCAAGCAGGGAGTAGACCACTTTCCAtgtcctgcgtcacatccccttcctcggcctctgaccagctgcagctgtggcaggcagttctgtgtgagcttggactcatgctgacagcaccccgatttccatcacacggagtgcatcattcagatttctatttcagctcctcctccgaagtcccaggagtctgtttggcttgtgtgactcaagcagagcccagaaattaggggagttaatggccctgggacaaccctcaacaatggaggatgggagccggtagacatatgccccagcctctttgagttggacagttctgggaagcattctgtatgtttttcaggagatcccagcggaattgagcccccattgctcatggcagtgactttgatgatggaccttatattggcttttcctcctcactctcactttttcattctcctcaattcctcacttctatgtcctgagatcaactcccagttaaaccacctgcatctaaatccttgtctcaatctctgctcctaggagaattcaaactaagacagGAAGGAAAAGGTCAAGTTCACTCTGAGCTTGACGTGCTGAAGAGACATCCCGTGGAAATGTGCAGCAGGCAGTGGCCACGTGACTTTTGGAGATGCTGATTTATGTATCAGCATGTGGTGACAGATAAAACCACAGGCTAGAGAAAATGCATTCCTAAGAGGCCAGTGCAGAGGCATCCTTCCAAGGcaggggttctcaaccacgagccattttaccccccagtaaatatttggcaatgcccgaggacatttttggttgtcacaacgggaacaggaacctgctactggcatctaatgagtagaggtgaaggatgctgctgaacatcctacagtgcacaggtcagaaccccataacaaagaatgatccagcccaaaatatcactagtgccgaggctgagaaaccTGTTCTAAGGGCATTGCAAAGTACCATGAGAGTGATGCTGTGAAAGCTGGTTTCACATAGCCAGAGGGGCCAGCAGGCAGTGCTGCAGGGGCCATGGGAAGTAAGAACCAATTATTGCCCATTGAGCTCAGCACCATGGGGCAGAAGCCAGTGCCTTGAAGGCAGTCGAtgaagatgagtacagactctttccaggagctttgaggggaaggaaaagagcaagtgtttgggcttagccagaaggagctgtagagtcaaggaagagttttaaaagatactggaatgataaacatcctgtatatgctgatgacaaagcaccagttgggacaccagaaagggatgactgatggaagagagagagCCCCGGGACATAATGTGGTACTCAAAGCCAGATGAACTAACTTGGATCAGGTAAGGAAAACCTTCCCTGGAAGCTGGAAGGAGGCAAGGGTGGGCATAGTTATAC</dnaseq>| | sequence = <dnaseq>tggctattgtcattcaggatatagctgatacgtggtaccagttgctggaacacacagattcgggaatcaagggtagatacaggattggtccctctcaccatcactctcagtgatccactagcaCCAAGGTGAAAGAATGTCTAACATTCAGAAAATACACTCAAGAATAGGTCTGAAATCCAGGAGAATGTCTCTTGGTGCCATGGGCCCTtgtagcaagcatggcctgaaaaagcgaagtcacctgagggctcagacccccagggatatcaataagtgtcaacccatcaggcaagcaacctggaacagcccaaatgctgaaaatgaggaaaatcctgaatagaggctggagaaggaagacaatgaacagcaacgtcagcccctggatttacagcagcagggagcagggttgtagctccttctgttaactttcttGTATGAAATCTTTTTGCTAGATGTCTGGCTACCACCTTGAAGACCCAGTAACAGAATGGACTTAATGAATGTGGGGCATGGGTGGATCAGAGTGGTGCAAGCAGGGAGTAGACCACTTTCCAtgtcctgcgtcacatccccttcctcggcctctgaccagctgcagctgtggcaggcagttctgtgtgagcttggactcatgctgacagcaccccgatttccatcacacggagtgcatcattcagatttctatttcagctcctcctccgaagtcccaggagtctgtttggcttgtgtgactcaagcagagcccagaaattaggggagttaatggccctgggacaaccctcaacaatggaggatgggagccggtagacatatgccccagcctctttgagttggacagttctgggaagcattctgtatgtttttcaggagatcccagcggaattgagcccccattgctcatggcagtgactttgatgatggaccttatattggcttttcctcctcactctcactttttcattctcctcaattcctcacttctatgtcctgagatcaactcccagttaaaccacctgcatctaaatccttgtctcaatctctgctcctaggagaattcaaactaagacagGAAGGAAAAGGTCAAGTTCACTCTGAGCTTGACGTGCTGAAGAGACATCCCGTGGAAATGTGCAGCAGGCAGTGGCCACGTGACTTTTGGAGATGCTGATTTATGTATCAGCATGTGGTGACAGATAAAACCACAGGCTAGAGAAAATGCATTCCTAAGAGGCCAGTGCAGAGGCATCCTTCCAAGGcaggggttctcaaccacgagccattttaccccccagtaaatatttggcaatgcccgaggacatttttggttgtcacaacgggaacaggaacctgctactggcatctaatgagtagaggtgaaggatgctgctgaacatcctacagtgcacaggtcagaaccccataacaaagaatgatccagcccaaaatatcactagtgccgaggctgagaaaccTGTTCTAAGGGCATTGCAAAGTACCATGAGAGTGATGCTGTGAAAGCTGGTTTCACATAGCCAGAGGGGCCAGCAGGCAGTGCTGCAGGGGCCATGGGAAGTAAGAACCAATTATTGCCCATTGAGCTCAGCACCATGGGGCAGAAGCCAGTGCCTTGAAGGCAGTCGAtgaagatgagtacagactctttccaggagctttgaggggaaggaaaagagcaagtgtttgggcttagccagaaggagctgtagagtcaaggaagagttttaaaagatactggaatgataaacatcctgtatatgctgatgacaaagcaccagttgggacaccagaaagggatgactgatggaagagagagagCCCCGGGACATAATGTGGTACTCAAAGCCAGATGAACTAACTTGGATCAGGTAAGGAAAACCTTCCCTGGAAGCTGGAAGGAGGCAAGGGTGGGCATAGTTATAC</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG023784]] |
Revision as of 09:09, 13 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT059131 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1941 nt |
Genomic location |
chr18+:43857448..43859388 |
Exon number |
1 |
Exons |
43857448..43859388 |
Genome context |
|
Sequence |
000001 tggctattgt cattcaggat atagctgata cgtggtacca gttgctggaa cacacagatt cgggaatcaa gggtagatac 000080
000081 aggattggtc cctctcacca tcactctcag tgatccacta gcaCCAAGGT GAAAGAATGT CTAACATTCA GAAAATACAC 000160 000161 TCAAGAATAG GTCTGAAATC CAGGAGAATG TCTCTTGGTG CCATGGGCCC Ttgtagcaag catggcctga aaaagcgaag 000240 000241 tcacctgagg gctcagaccc ccagggatat caataagtgt caacccatca ggcaagcaac ctggaacagc ccaaatgctg 000320 000321 aaaatgagga aaatcctgaa tagaggctgg agaaggaaga caatgaacag caacgtcagc ccctggattt acagcagcag 000400 000401 ggagcagggt tgtagctcct tctgttaact ttcttGTATG AAATCTTTTT GCTAGATGTC TGGCTACCAC CTTGAAGACC 000480 000481 CAGTAACAGA ATGGACTTAA TGAATGTGGG GCATGGGTGG ATCAGAGTGG TGCAAGCAGG GAGTAGACCA CTTTCCAtgt 000560 000561 cctgcgtcac atccccttcc tcggcctctg accagctgca gctgtggcag gcagttctgt gtgagcttgg actcatgctg 000640 000641 acagcacccc gatttccatc acacggagtg catcattcag atttctattt cagctcctcc tccgaagtcc caggagtctg 000720 000721 tttggcttgt gtgactcaag cagagcccag aaattagggg agttaatggc cctgggacaa ccctcaacaa tggaggatgg 000800 000801 gagccggtag acatatgccc cagcctcttt gagttggaca gttctgggaa gcattctgta tgtttttcag gagatcccag 000880 000881 cggaattgag cccccattgc tcatggcagt gactttgatg atggacctta tattggcttt tcctcctcac tctcactttt 000960 000961 tcattctcct caattcctca cttctatgtc ctgagatcaa ctcccagtta aaccacctgc atctaaatcc ttgtctcaat 001040 001041 ctctgctcct aggagaattc aaactaagac agGAAGGAAA AGGTCAAGTT CACTCTGAGC TTGACGTGCT GAAGAGACAT 001120 001121 CCCGTGGAAA TGTGCAGCAG GCAGTGGCCA CGTGACTTTT GGAGATGCTG ATTTATGTAT CAGCATGTGG TGACAGATAA 001200 001201 AACCACAGGC TAGAGAAAAT GCATTCCTAA GAGGCCAGTG CAGAGGCATC CTTCCAAGGc aggggttctc aaccacgagc 001280 001281 cattttaccc cccagtaaat atttggcaat gcccgaggac atttttggtt gtcacaacgg gaacaggaac ctgctactgg 001360 001361 catctaatga gtagaggtga aggatgctgc tgaacatcct acagtgcaca ggtcagaacc ccataacaaa gaatgatcca 001440 001441 gcccaaaata tcactagtgc cgaggctgag aaaccTGTTC TAAGGGCATT GCAAAGTACC ATGAGAGTGA TGCTGTGAAA 001520 001521 GCTGGTTTCA CATAGCCAGA GGGGCCAGCA GGCAGTGCTG CAGGGGCCAT GGGAAGTAAG AACCAATTAT TGCCCATTGA 001600 001601 GCTCAGCACC ATGGGGCAGA AGCCAGTGCC TTGAAGGCAG TCGAtgaaga tgagtacaga ctctttccag gagctttgag 001680 001681 gggaaggaaa agagcaagtg tttgggctta gccagaagga gctgtagagt caaggaagag ttttaaaaga tactggaatg 001760 001761 ataaacatcc tgtatatgct gatgacaaag caccagttgg gacaccagaa agggatgact gatggaagag agagagCCCC 001840 001841 GGGACATAAT GTGGTACTCA AAGCCAGATG AACTAACTTG GATCAGGTAA GGAAAACCTT CCCTGGAAGC TGGAAGGAGG 001920 001921 CAAGGGTGGG CATAGTTATA C |
Predicted Small Protein
Name | NONHSAT059131_smProtein_902:1051 |
Length | 50 |
Molecular weight | 5517.5562 |
Aromaticity | 0.0612244897959 |
Instability index | 44.6734693878 |
Isoelectric point | 5.96221923828 |
Runs | 9 |
Runs residual | 0.0216216216216 |
Runs probability | 0.0494808534024 |
Amino acid sequence | MAVTLMMDLILAFPPHSHFFILLNSSLLCPEINSQLNHLHLNPCLNLCS |
Secondary structure | LHHHHHHHHHHHLLLLLLEEELLLLLLLLHHHHHHHHHLLLLHHHLLLL |
PRMN | - |
PiMo | - |