Difference between revisions of "Lnc-C5orf39-2:1"

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sequence = <dnaseq>AGAAATCGCCGCCAGGGCTAGGCTGGTGTTTGTCCTAAGTGGGTACTTGCTTGGGTTGAGAAATCACATTTTGGCTATTCCCCGACTTGAACCAGGGGATAGAAATCGTAGTCACCGGCTGGGCGCAGCGGCTCATGCTGTAATCCTGGCAGTTTGGGAGGCCGAGGCGGGCAGATTATTGAGGTTAGGAGTTCGAGACCAGCCTGGTCAATATGATGAAACACCGCCTCTAGTAAAAATACAAAAATTATCCGGGCGTGGTGGCGAGCGCCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGTAGAATCCCTTGAACCTGGGGTGCGGAGGTTGCAGTGAGCCAAGATCGCGCCACTGCACTCCAGGCTGGGCGACACGGCGAGACTCTGTCTCAAAACAAAACAAAAGGAAAAGAAGAGAAAAGAAAAAGAAACGCAGGCACCCTGAAATCGAAACTTGTTAGGACCAACAAGCCAACGACAGACGAATCTGCGGGGTCCTGCGACAGACACGCCAGCCCCGCCGCCACAGCACAGGGTTCTGGAGGTCGAGCTGTTCTGCGGGTTCTGCGGCGGCGCTGGGAAGAGACGGCGCCCGGGCAGCTCCCCTGTCACCGGCTTGGAGGAGCGGCGGGCTCCCCTAGCCCAGCGCCGCCGCCGCCGCCCGGGAACGCCAGGCTCACCCCAGCTGGGGAAGCTCCGAATCCCTCAGATCGGCGACCTGAGTGCTGTCGCCCCGAGAAAATGGAGGCATCGAGCAACGAGCTGTGCTGAGACCGAGAGACCTCAGTTCTGCGAAATGTCGGTGCCTGGAGCTTGCGAATGACTGCGGCCGGCGGGTTGTCAAGGACAACATTCCTTATGGCGCAACCAACAGCGCTGTCACCAAGAAACTGGACTCTGAGAAAAAAGAGGGTTTCGGCCACCGAGAAACTCCGTGCCACATGTGCCGTGACAGCAAAACCGCCCGCTCCGCGCCGCTGGTGAAAGAGCTAACGAACGCCAGGTGCTGCGACAGTGACACCGGGACTAGAAGGCCTCGGATGGAGAATGGGACGCCCAGAGCAAGCAGGAAAACGTTTTGTTTGGCTCAACTAGCGCTGTCGCAACCGGAAAACTGTCAGGCCAGTGCTGCTGCGGATGTGAGAAACCGGTGATCCGAAGGCGGAGTGGCGCTGGGCGCTGGACTCGCTGGTGTGAAAATCTGGCTGCTCTAGGACCCGGCAAGCGCGGGCACCAGGCGAACGCCAGCGACTTTGCCAGACAAATGCATGTCTTTTTTGGTCGCCATTCAAAGATGCAGCCGGCAGTCAGCCCCGGCTCTGAGAAACAAGTGGAGGTGTCAGCCATAAACCCTCCGTTCAGGGAAAAGAGAGTCGCTGCGACGGATCGACTGGCCGTTGGGTGGAACTTTCTTTGGTGGCCTAGTGACTAGAAAATAAAAACGAAAACGAAATAAAAAACTGCTACTGACATTACTCCCACGCTCCCTCCTCAAGTCAGTGGCTTCAGGCTTAAGAAAACCTGTATTTTTCTTGGCTGATCCGTGATCCCTAATTACTGAGGGCCCCGCGACCCACCAAGTGCGATTCGCAGAGGGAAAGGAGCTGGAATAAGGATCCAGAATGGGACGGATTTGGCTCCTCCAGGAAGAAAGCAAAACAAATGCAGGTCGCGAACACTTTACATTGCAGGAAGCTGCTCTTCCAGTGGCCGCGGCTGGGTCCTTCCACACCACCTCTCTGTCCTAGGCCTTCGTCCCGGTTCAGCCCTCACGGATTCTAGGCTAGCGGTCAACAACCGCATCCCTCCGGAACCTGGAAACTCTAGGTCCGAGATCTCGGTGAAGAATGAAAGGCACAGCGCCGCTCAACCCAGGCTTCAGGCCTGCCCCGCTGGTCCCGTCCCTTCCCTGTGGGATGGAACTCTGTGGGAATCGCTCCTTATTCTGATGGTTCACTCATTCAGATGTCCTTGATATTTGGGGATATTTCTAAAACAGCTGGGGAGAAAAATGGACTGCGAGGCTCCGGTGTTGGACGTGAAATTGGCAGTGAGACATCCGCCTCTAAGCCCAGGGAAAAGCTTAAATTGTGGTTCTCTGTCTCTAGCACCGTGATCTTTGAAATGCGTTATTGATTTTCTTCTTTCTTCTGGGAAATGCAATGCAGGTGAACTTGTAAGTGTTGAATCCTCCCTCTCCTCACTGTTCAATCAGACTGAGGCCTACTTCCTTTCTGATAAGAAATATGGAACTGCCATTGCTCAGTAGGAAAATGTCCTTTCTACAAGCATTCATATTTCAATAAAAATCTGCACTTTGTGAGTTGAGCCCCCTCAAAGAGACCTACAGACCCTGCCATGAGCATCTCCATCCACACTCATCATTTCCCATTTTCACCACTTCTGCTCCTGTGCAAACCAGTACTATCCTTTTCTGGGGGATCCTAGGCAGAAGCGATGGCAGGACAAAGGCAGAGAAGGCACTGCCAGGTCCTGCATGCCAGTAAAACTACTCATGTCAGCTGTTCTGCAGGATCCCATGAGAAGGTGAGTCACCAGAAAATGCAGTTTCCACATCCTGATGATTTCATCTCCCTACCCCAACTGATCAATTTCTCCAATTTTCCAGCCTCTCACCCTCCACAATCCCCTTAAAAACTGTAGCCCAGAACTCTCTGGAATGATGAATTTGAAGGTTTGCTCCTGTCTCCTCACTCAGAAGCCTGTAATCATTAAACTCTTTCTCTGATGC</dnaseq>|
 
sequence = <dnaseq>AGAAATCGCCGCCAGGGCTAGGCTGGTGTTTGTCCTAAGTGGGTACTTGCTTGGGTTGAGAAATCACATTTTGGCTATTCCCCGACTTGAACCAGGGGATAGAAATCGTAGTCACCGGCTGGGCGCAGCGGCTCATGCTGTAATCCTGGCAGTTTGGGAGGCCGAGGCGGGCAGATTATTGAGGTTAGGAGTTCGAGACCAGCCTGGTCAATATGATGAAACACCGCCTCTAGTAAAAATACAAAAATTATCCGGGCGTGGTGGCGAGCGCCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGTAGAATCCCTTGAACCTGGGGTGCGGAGGTTGCAGTGAGCCAAGATCGCGCCACTGCACTCCAGGCTGGGCGACACGGCGAGACTCTGTCTCAAAACAAAACAAAAGGAAAAGAAGAGAAAAGAAAAAGAAACGCAGGCACCCTGAAATCGAAACTTGTTAGGACCAACAAGCCAACGACAGACGAATCTGCGGGGTCCTGCGACAGACACGCCAGCCCCGCCGCCACAGCACAGGGTTCTGGAGGTCGAGCTGTTCTGCGGGTTCTGCGGCGGCGCTGGGAAGAGACGGCGCCCGGGCAGCTCCCCTGTCACCGGCTTGGAGGAGCGGCGGGCTCCCCTAGCCCAGCGCCGCCGCCGCCGCCCGGGAACGCCAGGCTCACCCCAGCTGGGGAAGCTCCGAATCCCTCAGATCGGCGACCTGAGTGCTGTCGCCCCGAGAAAATGGAGGCATCGAGCAACGAGCTGTGCTGAGACCGAGAGACCTCAGTTCTGCGAAATGTCGGTGCCTGGAGCTTGCGAATGACTGCGGCCGGCGGGTTGTCAAGGACAACATTCCTTATGGCGCAACCAACAGCGCTGTCACCAAGAAACTGGACTCTGAGAAAAAAGAGGGTTTCGGCCACCGAGAAACTCCGTGCCACATGTGCCGTGACAGCAAAACCGCCCGCTCCGCGCCGCTGGTGAAAGAGCTAACGAACGCCAGGTGCTGCGACAGTGACACCGGGACTAGAAGGCCTCGGATGGAGAATGGGACGCCCAGAGCAAGCAGGAAAACGTTTTGTTTGGCTCAACTAGCGCTGTCGCAACCGGAAAACTGTCAGGCCAGTGCTGCTGCGGATGTGAGAAACCGGTGATCCGAAGGCGGAGTGGCGCTGGGCGCTGGACTCGCTGGTGTGAAAATCTGGCTGCTCTAGGACCCGGCAAGCGCGGGCACCAGGCGAACGCCAGCGACTTTGCCAGACAAATGCATGTCTTTTTTGGTCGCCATTCAAAGATGCAGCCGGCAGTCAGCCCCGGCTCTGAGAAACAAGTGGAGGTGTCAGCCATAAACCCTCCGTTCAGGGAAAAGAGAGTCGCTGCGACGGATCGACTGGCCGTTGGGTGGAACTTTCTTTGGTGGCCTAGTGACTAGAAAATAAAAACGAAAACGAAATAAAAAACTGCTACTGACATTACTCCCACGCTCCCTCCTCAAGTCAGTGGCTTCAGGCTTAAGAAAACCTGTATTTTTCTTGGCTGATCCGTGATCCCTAATTACTGAGGGCCCCGCGACCCACCAAGTGCGATTCGCAGAGGGAAAGGAGCTGGAATAAGGATCCAGAATGGGACGGATTTGGCTCCTCCAGGAAGAAAGCAAAACAAATGCAGGTCGCGAACACTTTACATTGCAGGAAGCTGCTCTTCCAGTGGCCGCGGCTGGGTCCTTCCACACCACCTCTCTGTCCTAGGCCTTCGTCCCGGTTCAGCCCTCACGGATTCTAGGCTAGCGGTCAACAACCGCATCCCTCCGGAACCTGGAAACTCTAGGTCCGAGATCTCGGTGAAGAATGAAAGGCACAGCGCCGCTCAACCCAGGCTTCAGGCCTGCCCCGCTGGTCCCGTCCCTTCCCTGTGGGATGGAACTCTGTGGGAATCGCTCCTTATTCTGATGGTTCACTCATTCAGATGTCCTTGATATTTGGGGATATTTCTAAAACAGCTGGGGAGAAAAATGGACTGCGAGGCTCCGGTGTTGGACGTGAAATTGGCAGTGAGACATCCGCCTCTAAGCCCAGGGAAAAGCTTAAATTGTGGTTCTCTGTCTCTAGCACCGTGATCTTTGAAATGCGTTATTGATTTTCTTCTTTCTTCTGGGAAATGCAATGCAGGTGAACTTGTAAGTGTTGAATCCTCCCTCTCCTCACTGTTCAATCAGACTGAGGCCTACTTCCTTTCTGATAAGAAATATGGAACTGCCATTGCTCAGTAGGAAAATGTCCTTTCTACAAGCATTCATATTTCAATAAAAATCTGCACTTTGTGAGTTGAGCCCCCTCAAAGAGACCTACAGACCCTGCCATGAGCATCTCCATCCACACTCATCATTTCCCATTTTCACCACTTCTGCTCCTGTGCAAACCAGTACTATCCTTTTCTGGGGGATCCTAGGCAGAAGCGATGGCAGGACAAAGGCAGAGAAGGCACTGCCAGGTCCTGCATGCCAGTAAAACTACTCATGTCAGCTGTTCTGCAGGATCCCATGAGAAGGTGAGTCACCAGAAAATGCAGTTTCCACATCCTGATGATTTCATCTCCCTACCCCAACTGATCAATTTCTCCAATTTTCCAGCCTCTCACCCTCCACAATCCCCTTAAAAACTGTAGCCCAGAACTCTCTGGAATGATGAATTTGAAGGTTTGCTCCTGTCTCCTCACTCAGAAGCCTGTAATCATTAAACTCTTTCTCTGATGC</dnaseq>|
 
}}
 
}}
[[Category:Intergenic]][[Category:lnc-C5orf39-2]]
+
[[Category:Intergenic]][[Category:lnc-C5orf39-2]][[Category:NONHSAG040294]]

Revision as of 09:16, 13 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

lnc-C5orf39-2:1

Source

LNCipedia2.1

Same with

NONHSAT101242

Classification

intergenic

Length

2757 nt

Genomic location

chr5-:42985503..42993435

Exon number

2

Exons

42985503..42985764,42990941..42993435

Genome context

Sequence
000001 AGAAATCGCC GCCAGGGCTA GGCTGGTGTT TGTCCTAAGT GGGTACTTGC TTGGGTTGAG AAATCACATT TTGGCTATTC 000080
000081 CCCGACTTGA ACCAGGGGAT AGAAATCGTA GTCACCGGCT GGGCGCAGCG GCTCATGCTG TAATCCTGGC AGTTTGGGAG 000160
000161 GCCGAGGCGG GCAGATTATT GAGGTTAGGA GTTCGAGACC AGCCTGGTCA ATATGATGAA ACACCGCCTC TAGTAAAAAT 000240
000241 ACAAAAATTA TCCGGGCGTG GTGGCGAGCG CCTGTAATCC CAGCTACTCA GGAGGCTGAG GCAGTAGAAT CCCTTGAACC 000320
000321 TGGGGTGCGG AGGTTGCAGT GAGCCAAGAT CGCGCCACTG CACTCCAGGC TGGGCGACAC GGCGAGACTC TGTCTCAAAA 000400
000401 CAAAACAAAA GGAAAAGAAG AGAAAAGAAA AAGAAACGCA GGCACCCTGA AATCGAAACT TGTTAGGACC AACAAGCCAA 000480
000481 CGACAGACGA ATCTGCGGGG TCCTGCGACA GACACGCCAG CCCCGCCGCC ACAGCACAGG GTTCTGGAGG TCGAGCTGTT 000560
000561 CTGCGGGTTC TGCGGCGGCG CTGGGAAGAG ACGGCGCCCG GGCAGCTCCC CTGTCACCGG CTTGGAGGAG CGGCGGGCTC 000640
000641 CCCTAGCCCA GCGCCGCCGC CGCCGCCCGG GAACGCCAGG CTCACCCCAG CTGGGGAAGC TCCGAATCCC TCAGATCGGC 000720
000721 GACCTGAGTG CTGTCGCCCC GAGAAAATGG AGGCATCGAG CAACGAGCTG TGCTGAGACC GAGAGACCTC AGTTCTGCGA 000800
000801 AATGTCGGTG CCTGGAGCTT GCGAATGACT GCGGCCGGCG GGTTGTCAAG GACAACATTC CTTATGGCGC AACCAACAGC 000880
000881 GCTGTCACCA AGAAACTGGA CTCTGAGAAA AAAGAGGGTT TCGGCCACCG AGAAACTCCG TGCCACATGT GCCGTGACAG 000960
000961 CAAAACCGCC CGCTCCGCGC CGCTGGTGAA AGAGCTAACG AACGCCAGGT GCTGCGACAG TGACACCGGG ACTAGAAGGC 001040
001041 CTCGGATGGA GAATGGGACG CCCAGAGCAA GCAGGAAAAC GTTTTGTTTG GCTCAACTAG CGCTGTCGCA ACCGGAAAAC 001120
001121 TGTCAGGCCA GTGCTGCTGC GGATGTGAGA AACCGGTGAT CCGAAGGCGG AGTGGCGCTG GGCGCTGGAC TCGCTGGTGT 001200
001201 GAAAATCTGG CTGCTCTAGG ACCCGGCAAG CGCGGGCACC AGGCGAACGC CAGCGACTTT GCCAGACAAA TGCATGTCTT 001280
001281 TTTTGGTCGC CATTCAAAGA TGCAGCCGGC AGTCAGCCCC GGCTCTGAGA AACAAGTGGA GGTGTCAGCC ATAAACCCTC 001360
001361 CGTTCAGGGA AAAGAGAGTC GCTGCGACGG ATCGACTGGC CGTTGGGTGG AACTTTCTTT GGTGGCCTAG TGACTAGAAA 001440
001441 ATAAAAACGA AAACGAAATA AAAAACTGCT ACTGACATTA CTCCCACGCT CCCTCCTCAA GTCAGTGGCT TCAGGCTTAA 001520
001521 GAAAACCTGT ATTTTTCTTG GCTGATCCGT GATCCCTAAT TACTGAGGGC CCCGCGACCC ACCAAGTGCG ATTCGCAGAG 001600
001601 GGAAAGGAGC TGGAATAAGG ATCCAGAATG GGACGGATTT GGCTCCTCCA GGAAGAAAGC AAAACAAATG CAGGTCGCGA 001680
001681 ACACTTTACA TTGCAGGAAG CTGCTCTTCC AGTGGCCGCG GCTGGGTCCT TCCACACCAC CTCTCTGTCC TAGGCCTTCG 001760
001761 TCCCGGTTCA GCCCTCACGG ATTCTAGGCT AGCGGTCAAC AACCGCATCC CTCCGGAACC TGGAAACTCT AGGTCCGAGA 001840
001841 TCTCGGTGAA GAATGAAAGG CACAGCGCCG CTCAACCCAG GCTTCAGGCC TGCCCCGCTG GTCCCGTCCC TTCCCTGTGG 001920
001921 GATGGAACTC TGTGGGAATC GCTCCTTATT CTGATGGTTC ACTCATT