Difference between revisions of "ENST00000414795.1"

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sequence = <dnaseq>TTCAATCCCACCCTTCCTTACCAGATACTAAAGTCATTTCTACCTTTCCTCTTGAGATTTGCTGTTAGATATTAGAACTTCTCTTTGTCACATACTTACAGGGAGATTTTGATTATCCATGGGATTCCATTCATAACCTCATAAACCACCCCCACGAAGAAATTATATATCTCGAAGAGGTTATATGGGCACATTGTGAGATGGTGGCCTCCCATGAGCCAAGAAAAGAGGGCTTAAAATGAATCCTACCTGGCTGGCACCTTGATCTTGGACTTCCTAGCATCCAGAAATGTGACATGGTTTTCTGGTGCCTTGGCAACTGCTCACGATGCATGGGAAGACTAAACACTTTGTGTACAGCATTCTGTCTCATCCAGTGAAGACTTCCTCTGGATTATTGCAGCAGACACCTCTAACCTCCTTAATCTGTACTGAATCTTGCTCTGTCGCCAGGCTGGAGTGCAGTGGTGCGATATTGGCTCACTGCAACCTCCGCCTCTCGGGTT</dnaseq>|
 
sequence = <dnaseq>TTCAATCCCACCCTTCCTTACCAGATACTAAAGTCATTTCTACCTTTCCTCTTGAGATTTGCTGTTAGATATTAGAACTTCTCTTTGTCACATACTTACAGGGAGATTTTGATTATCCATGGGATTCCATTCATAACCTCATAAACCACCCCCACGAAGAAATTATATATCTCGAAGAGGTTATATGGGCACATTGTGAGATGGTGGCCTCCCATGAGCCAAGAAAAGAGGGCTTAAAATGAATCCTACCTGGCTGGCACCTTGATCTTGGACTTCCTAGCATCCAGAAATGTGACATGGTTTTCTGGTGCCTTGGCAACTGCTCACGATGCATGGGAAGACTAAACACTTTGTGTACAGCATTCTGTCTCATCCAGTGAAGACTTCCTCTGGATTATTGCAGCAGACACCTCTAACCTCCTTAATCTGTACTGAATCTTGCTCTGTCGCCAGGCTGGAGTGCAGTGGTGCGATATTGGCTCACTGCAACCTCCGCCTCTCGGGTT</dnaseq>|
 
}}
 
}}
[[Category:Intergenic]][[Category:lnc-CMPK2-1]]
+
[[Category:Intergenic]][[Category:lnc-CMPK2-1]][[Category:NONHSAG026902]]

Revision as of 09:20, 13 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

ENST00000414795.1

Source

Gencode19

Same with

lnc-CMPK2-1:1,NONHSAT068918

Classification

intergenic

Length

506 nt

Genomic location

chr2-:6969011..6980595

Exon number

4

Exons

6969011..6969086,6970099..6970237,6973445..6973561,6980422..6980595

Genome context

Sequence
000001 TTCAATCCCA CCCTTCCTTA CCAGATACTA AAGTCATTTC TACCTTTCCT CTTGAGATTT GCTGTTAGAT ATTAGAACTT 000080
000081 CTCTTTGTCA CATACTTACA GGGAGATTTT GATTATCCAT GGGATTCCAT TCATAACCTC ATAAACCACC CCCACGAAGA 000160
000161 AATTATATAT CTCGAAGAGG TTATATGGGC ACATTGTGAG ATGGTGGCCT CCCATGAGCC AAGAAAAGAG GGCTTAAAAT 000240
000241 GAATCCTACC TGGCTGGCAC CTTGATCTTG GACTTCCTAG CATCCAGAAA TGTGACATGG TTTTCTGGTG CCTTGGCAAC 000320
000321 TGCTCACGAT GCATGGGAAG ACTAAACACT TTGTGTACAG CATTCTGTCT CATCCAGTGA AGACTTCCTC TGGATTATTG 000400
000401 CAGCAGACAC CTCTAACCTC CTTAATCTGT ACTGAATCTT GCTCTGTCGC CAGGCTGGAG TGCAGTGGTG CGATATTGGC 000480
000481 TCACTGCAAC CTCCGCCTCT CGGGTT
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Predicted Small Protein

Name ENST00000414795.1_smProtein_296:379
Length 28
Molecular weight 3084.7697
Aromaticity 0.111111111111
Instability index 47.8222222222
Isoelectric point 8.41741943359
Runs 5
Runs residual 0.0214707461084
Runs probability 0.0334393216747
Amino acid sequence MVFWCLGNCSRCMGRLNTLCTAFCLIQ
Secondary structure LEEEELLLLLHHHHHHHHHHHHHHHLL
PRMN -
PiMo -