Difference between revisions of "NONHSAT139951"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>AGAAGCCTCTGCTCCACCGCGGCGAGAGGCATGGGCACGTGGCTGCCGAGGGTGGCCGAGCTCTGGGAAGAAAAGCCCGTGTGCCTCTGCATAGCGTCGCTACAGCGCTGACTCGGTGTGGATTGATTGGAAAGGTTTGAGGGAGTACTTGGGAAGCATGGTGGCACATGATGAGACTGGAGGTCTCCTACCTATTAAAAGGACCATACGAGTCCTAGATGTCAATAACCAGTCCTTCAGAGAACAAGAGGAGCCAAGCAATAAAAGAGTTCGACCTCTGGCTCGTGTCACGTCCTTGGCAAATTTAATCTCTCCTGTAAGAAATGGAGCTGTCAGACGTTTTGGTCAAACAATACAGTCATTTACCCTTCGTGGTGACCACAGATCCCCAGCCTCTGCCCAGAAGTTTTCTAGCAGGTCAACAGTCCCAACACCCGCCAAGAGAAGGAGCAGTGCACTGTGGTCAGAGATGCTGGACATCACCATGAAGGAGTCTCTCACCACCAGGGAGATCAGACGGCAGGAGGAATGACCTCTGATGTTTGCTGGATGTTTTTAGGCAATATATGAAATGTCCCGAGGTGAACAGGATTTAATTG</dnaseq>| | sequence = <dnaseq>AGAAGCCTCTGCTCCACCGCGGCGAGAGGCATGGGCACGTGGCTGCCGAGGGTGGCCGAGCTCTGGGAAGAAAAGCCCGTGTGCCTCTGCATAGCGTCGCTACAGCGCTGACTCGGTGTGGATTGATTGGAAAGGTTTGAGGGAGTACTTGGGAAGCATGGTGGCACATGATGAGACTGGAGGTCTCCTACCTATTAAAAGGACCATACGAGTCCTAGATGTCAATAACCAGTCCTTCAGAGAACAAGAGGAGCCAAGCAATAAAAGAGTTCGACCTCTGGCTCGTGTCACGTCCTTGGCAAATTTAATCTCTCCTGTAAGAAATGGAGCTGTCAGACGTTTTGGTCAAACAATACAGTCATTTACCCTTCGTGGTGACCACAGATCCCCAGCCTCTGCCCAGAAGTTTTCTAGCAGGTCAACAGTCCCAACACCCGCCAAGAGAAGGAGCAGTGCACTGTGGTCAGAGATGCTGGACATCACCATGAAGGAGTCTCTCACCACCAGGGAGATCAGACGGCAGGAGGAATGACCTCTGATGTTTGCTGGATGTTTTTAGGCAATATATGAAATGTCCCGAGGTGAACAGGATTTAATTG</dnaseq>| | ||
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| − | [[Category:Sense]] | + | [[Category:Sense]][[Category:NONHSAG005096]] |
Revision as of 09:23, 13 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT139951 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
sense |
| Length |
599 nt |
| Genomic location |
chr10+:5488572..5494860 |
| Exon number |
4 |
| Exons |
5488572..5488821,5493793..5493900,5494321..5494488,5494788..5494860 |
| Genome context |
|
| Sequence |
000001 AGAAGCCTCT GCTCCACCGC GGCGAGAGGC ATGGGCACGT GGCTGCCGAG GGTGGCCGAG CTCTGGGAAG AAAAGCCCGT 000080
000081 GTGCCTCTGC ATAGCGTCGC TACAGCGCTG ACTCGGTGTG GATTGATTGG AAAGGTTTGA GGGAGTACTT GGGAAGCATG 000160 000161 GTGGCACATG ATGAGACTGG AGGTCTCCTA CCTATTAAAA GGACCATACG AGTCCTAGAT GTCAATAACC AGTCCTTCAG 000240 000241 AGAACAAGAG GAGCCAAGCA ATAAAAGAGT TCGACCTCTG GCTCGTGTCA CGTCCTTGGC AAATTTAATC TCTCCTGTAA 000320 000321 GAAATGGAGC TGTCAGACGT TTTGGTCAAA CAATACAGTC ATTTACCCTT CGTGGTGACC ACAGATCCCC AGCCTCTGCC 000400 000401 CAGAAGTTTT CTAGCAGGTC AACAGTCCCA ACACCCGCCA AGAGAAGGAG CAGTGCACTG TGGTCAGAGA TGCTGGACAT 000480 000481 CACCATGAAG GAGTCTCTCA CCACCAGGGA GATCAGACGG CAGGAGGAAT GACCTCTGAT GTTTGCTGGA TGTTTTTAGG 000560 000561 CAATATATGA AATGTCCCGA GGTGAACAGG ATTTAATTG |
Predicted Small Protein
| Name | NONHSAT139951_smProtein_323:487 |
| Length | 55 |
| Molecular weight | 6057.8104 |
| Aromaticity | 0.0740740740741 |
| Instability index | 60.3388888889 |
| Isoelectric point | 6.80474853516 |
| Runs | 10 |
| Runs residual | 0.0224932249322 |
| Runs probability | 0.0185214626391 |
| Amino acid sequence | MELSDVLVKQYSHLPFVVTTDPQPLPRSFLAGQQSQHPPREGAVHCGQRCWTSP |
| Secondary structure | LLHHHHEEEELLLLLEEEELLLLLLLLLLLLLLLLLLLLLLLEEELLLEEEELL |
| PRMN | - |
| PiMo | - |
