Difference between revisions of "NONHSAT083406"

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sequence = <dnaseq>GTGGATCTAGGGTTGAATGACCTCCCCAGGGAACGCAGGCTTGAAGTGGAGGCTGAGAATGCAATCCGAGTACAGCCATAGGCCGGTCAAAGGTATGGAGGCGGTGTGTAGCAGGGGTGAGCGGGGTAGGAGTGGCTTGGATGTCTGTAGTTCTATTCTAAGGGTGCGGGAGACATGTAACATTTACCTTATTCAtttttcgagacagggtcttgctgtgtcacccaggcttagtgcagtggcgtggcgtgttcatggcttactgcaacctcaaactcctggactccgaacagctgggaccaaaagcatgcacagcctcaccaggctaatttttaattttttttttttttttttgtaaagatggggtcttgctaagttacccaggctagtttggcctcaagcgaccctctcactttggcctcccaaagtgctaggattataggcggagcgccagtgcctggcTGGGACGTTTATAAAAAGGAGCAATGCACAAGAGGCAACAAAGGCAAGTAAAGAGGAGGCTGGTGGGCTTGCAGAAACGCCCTGCAGTACCTATGCTGCGGTTCTCCCACTTCACTGATAACAAATCCTCAGTATCCACTGATACAAATCCTGGGACTGCTGGGCCAGTCCCAGGAATGACACTGGGACAGACTCCCTGGAGGTGGATCAGAAAGCTGCAGTTTTACCAGGGGTCCTGCTGTTGAGGCAGCCGGCTCAAGGACCAAGCCCAAATAAGACACTGAGAGGAAGGCTGCAGGCCAGGGTGCAGGAGTAATGACCAGGATCAGTGCTCCAACTGGCCCCACTGTGTCATTAAAAGGCTCTGCAATGGAATCCATCCTGGTCCAGGCAGGGGAGTGTGCCTCCAGCAAAGGACCAGGCGTTTCACTGCATACACAGCAGGTGTTGCTTAGTGAAGACAAAAACCCAGAGCCAGAGGTACTGTAACATTCTTCATTATGCATAAAGTGACAGTCTGTTAGCTGATGTGATCCTGCAAATGAAGGCTGTCTACCCACCAAGGGTTTCTCCCTCTGCTAGTAAAACTGAGACTTTGTCAGTGGAGGCTCAGGTAAGTCCCCACAGTGCTCATGCCTTCCAAAACCACGCCCATTTCCAGTGATGATGGTTTGTGCCACAGGCCAAGTACTGAACATCATGACACTCATAGACACTCTTCACTGAAGACGTGGATAGACCCTGGGGCCACCATTCTCTCCTCTCTGGAGTGTTGGAGGGGCCCTGACCAGGGCAGGACCCCCATGTCTGGAAGCAGGGTTAGCCCTGGCTCATGGGGGACCCTGCTGGGCTTAGCCATTGCCACCTAGGGATCAGGCAGCCTTGTTTCTTCCTACTTTCTCCAGGAGAAGCCCCAGAGGGACACTTTTCTAATGGTGAGATGGAACACGGAGCACCTGCCAACAGGCCTTCAGTTATGGTCAGAGGCCCAACCACCAGTCTGTGTTAGTACCTAATCAAACATTTAGATTTAGGCTTTAGTTATTGCCTGTTTTTACTTGAAATTCTTGGCTTAGAATTATTCCCAATGGGGCCAGGCACAGTGGCTCATGGGAACAAATTTAAAATAATCAGATTAGCATGTCAAAAGATCTCACGTTATAGAAAGTGAAGATCTAAGACCAAATAAATACTGATAAAAAATACAGGCCAGCAGAAGCTTGGATGATTTAATAAATTAAAATT</dnaseq>|
 
sequence = <dnaseq>GTGGATCTAGGGTTGAATGACCTCCCCAGGGAACGCAGGCTTGAAGTGGAGGCTGAGAATGCAATCCGAGTACAGCCATAGGCCGGTCAAAGGTATGGAGGCGGTGTGTAGCAGGGGTGAGCGGGGTAGGAGTGGCTTGGATGTCTGTAGTTCTATTCTAAGGGTGCGGGAGACATGTAACATTTACCTTATTCAtttttcgagacagggtcttgctgtgtcacccaggcttagtgcagtggcgtggcgtgttcatggcttactgcaacctcaaactcctggactccgaacagctgggaccaaaagcatgcacagcctcaccaggctaatttttaattttttttttttttttttgtaaagatggggtcttgctaagttacccaggctagtttggcctcaagcgaccctctcactttggcctcccaaagtgctaggattataggcggagcgccagtgcctggcTGGGACGTTTATAAAAAGGAGCAATGCACAAGAGGCAACAAAGGCAAGTAAAGAGGAGGCTGGTGGGCTTGCAGAAACGCCCTGCAGTACCTATGCTGCGGTTCTCCCACTTCACTGATAACAAATCCTCAGTATCCACTGATACAAATCCTGGGACTGCTGGGCCAGTCCCAGGAATGACACTGGGACAGACTCCCTGGAGGTGGATCAGAAAGCTGCAGTTTTACCAGGGGTCCTGCTGTTGAGGCAGCCGGCTCAAGGACCAAGCCCAAATAAGACACTGAGAGGAAGGCTGCAGGCCAGGGTGCAGGAGTAATGACCAGGATCAGTGCTCCAACTGGCCCCACTGTGTCATTAAAAGGCTCTGCAATGGAATCCATCCTGGTCCAGGCAGGGGAGTGTGCCTCCAGCAAAGGACCAGGCGTTTCACTGCATACACAGCAGGTGTTGCTTAGTGAAGACAAAAACCCAGAGCCAGAGGTACTGTAACATTCTTCATTATGCATAAAGTGACAGTCTGTTAGCTGATGTGATCCTGCAAATGAAGGCTGTCTACCCACCAAGGGTTTCTCCCTCTGCTAGTAAAACTGAGACTTTGTCAGTGGAGGCTCAGGTAAGTCCCCACAGTGCTCATGCCTTCCAAAACCACGCCCATTTCCAGTGATGATGGTTTGTGCCACAGGCCAAGTACTGAACATCATGACACTCATAGACACTCTTCACTGAAGACGTGGATAGACCCTGGGGCCACCATTCTCTCCTCTCTGGAGTGTTGGAGGGGCCCTGACCAGGGCAGGACCCCCATGTCTGGAAGCAGGGTTAGCCCTGGCTCATGGGGGACCCTGCTGGGCTTAGCCATTGCCACCTAGGGATCAGGCAGCCTTGTTTCTTCCTACTTTCTCCAGGAGAAGCCCCAGAGGGACACTTTTCTAATGGTGAGATGGAACACGGAGCACCTGCCAACAGGCCTTCAGTTATGGTCAGAGGCCCAACCACCAGTCTGTGTTAGTACCTAATCAAACATTTAGATTTAGGCTTTAGTTATTGCCTGTTTTTACTTGAAATTCTTGGCTTAGAATTATTCCCAATGGGGCCAGGCACAGTGGCTCATGGGAACAAATTTAAAATAATCAGATTAGCATGTCAAAAGATCTCACGTTATAGAAAGTGAAGATCTAAGACCAAATAAATACTGATAAAAAATACAGGCCAGCAGAAGCTTGGATGATTTAATAAATTAAAATT</dnaseq>|
 
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[[Category:Antisense]]
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[[Category:Antisense]][[Category:NONHSAG033272]]

Revision as of 09:30, 13 October 2014

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT083406

Source

NONCODE4.0

Same with

,

Classification

antisense

Length

1707 nt

Genomic location

chr22+:19435757..19437463

Exon number

1

Exons

19435757..19437463

Genome context

Sequence
000001 GTGGATCTAG GGTTGAATGA CCTCCCCAGG GAACGCAGGC TTGAAGTGGA GGCTGAGAAT GCAATCCGAG TACAGCCATA 000080
000081 GGCCGGTCAA AGGTATGGAG GCGGTGTGTA GCAGGGGTGA GCGGGGTAGG AGTGGCTTGG ATGTCTGTAG TTCTATTCTA 000160
000161 AGGGTGCGGG AGACATGTAA CATTTACCTT ATTCAttttt cgagacaggg tcttgctgtg tcacccaggc ttagtgcagt 000240
000241 ggcgtggcgt gttcatggct tactgcaacc tcaaactcct ggactccgaa cagctgggac caaaagcatg cacagcctca 000320
000321 ccaggctaat ttttaatttt tttttttttt ttttgtaaag atggggtctt gctaagttac ccaggctagt ttggcctcaa 000400
000401 gcgaccctct cactttggcc tcccaaagtg ctaggattat aggcggagcg ccagtgcctg gcTGGGACGT TTATAAAAAG 000480
000481 GAGCAATGCA CAAGAGGCAA CAAAGGCAAG TAAAGAGGAG GCTGGTGGGC TTGCAGAAAC GCCCTGCAGT ACCTATGCTG 000560
000561 CGGTTCTCCC ACTTCACTGA TAACAAATCC TCAGTATCCA CTGATACAAA TCCTGGGACT GCTGGGCCAG TCCCAGGAAT 000640
000641 GACACTGGGA CAGACTCCCT GGAGGTGGAT CAGAAAGCTG CAGTTTTACC AGGGGTCCTG CTGTTGAGGC AGCCGGCTCA 000720
000721 AGGACCAAGC CCAAATAAGA CACTGAGAGG AAGGCTGCAG GCCAGGGTGC AGGAGTAATG ACCAGGATCA GTGCTCCAAC 000800
000801 TGGCCCCACT GTGTCATTAA AAGGCTCTGC AATGGAATCC ATCCTGGTCC AGGCAGGGGA GTGTGCCTCC AGCAAAGGAC 000880
000881 CAGGCGTTTC ACTGCATACA CAGCAGGTGT TGCTTAGTGA AGACAAAAAC CCAGAGCCAG AGGTACTGTA ACATTCTTCA 000960
000961 TTATGCATAA AGTGACAGTC TGTTAGCTGA TGTGATCCTG CAAATGAAGG CTGTCTACCC ACCAAGGGTT TCTCCCTCTG 001040
001041 CTAGTAAAAC TGAGACTTTG TCAGTGGAGG CTCAGGTAAG TCCCCACAGT GCTCATGCCT TCCAAAACCA CGCCCATTTC 001120
001121 CAGTGATGAT GGTTTGTGCC ACAGGCCAAG TACTGAACAT CATGACACTC ATAGACACTC TTCACTGAAG ACGTGGATAG 001200
001201 ACCCTGGGGC CACCATTCTC TCCTCTCTGG AGTGTTGGAG GGGCCCTGAC CAGGGCAGGA CCCCCATGTC TGGAAGCAGG 001280
001281 GTTAGCCCTG GCTCATGGGG GACCCTGCTG GGCTTAGCCA TTGCCACCTA GGGATCAGGC AGCCTTGTTT CTTCCTACTT 001360
001361 TCTCCAGGAG AAGCCCCAGA GGGACACTTT TCTAATGGTG AGATGGAACA CGGAGCACCT GCCAACAGGC CTTCAGTTAT 001440
001441 GGTCAGAGGC CCAACCACCA GTCTGTGTTA GTACCTAATC AAACATTTAG ATTTAGGCTT TAGTTATTGC CTGTTTTTAC 001520
001521 TTGAAATTCT TGGCTTAGAA TTATTCCCAA TGGGGCCAGG CACAGTGGCT CATGGGAACA AATTTAAAAT AATCAGATTA 001600
001601 GCATGTCAAA AGATCTCACG TTATAGAAAG TGAAGATCTA AGACCAAATA AATACTGATA AAAAATACAG GCCAGCAGAA 001680
001681 GCTTGGATGA TTTAATAAAT TAAAATT
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Predicted Small Protein

Name NONHSAT083406_smProtein_1094:1330
Length 79
Molecular weight 8378.2644
Aromaticity 0.0384615384615
Instability index 51.8756410256
Isoelectric point 6.95367431641
Runs 10
Runs residual 0.00547217010632
Runs probability 0.03112524289
Amino acid sequence MPSKTTPISSDDGLCHRPSTEHHDTHRHSSLKTWIDPGATILSSLECWRGPDQGRTPMSG
SRVSPGSWGTLLGLAIAT
Secondary structure LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLEEELLLLEEEEELLEELLLLLLLLLLLL
LLLLLLLHHHHHHHEELL
PRMN -
PiMo -