Difference between revisions of "NONHSAT060109"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>TGGATGGAGAGAATCACTCAGTGGTATCTGAGTTTTTGTTTCTGGGACTCACTCATTCATGGGAGATCCAGCTCCTCCTCCTAGTGTTTTCCTCTGTGCTCTATGTGGCAAGCATTACTGGAAACATCCTCATTGTGTTTTCTGTGACCACTGACCCTCACTTACACTCCCCCATGTACTTTCTACTGGTCAGTCTCTCCTTCATTGACTTAGGAGCCTGCTCTGTCACTTCTCCCAAGATGATTTATGACCTGTTCAGAAAGCGCAAAGTCATCTCCTTTGGAGGCTGCATCGCTCAAATCTTCTTCATCCACGTCATTGGTGGTGTGGAGATGGTGCTGCTCATAGCCATGGCCTTTGACAGTTATGTGGCCCTATTAAGCCCCTCCACTATCTGACCATTATGAGCCCAAGAATGTGCCTTTCATTTCTGGCTGTTGCCTGGACCCTTGTTGTCAGTCACTCCCTGTTCCAACTGGCATTTCTTGTTAATTTACCCTTCTGTGGCCCTAATGTGTTGGACAGCTTCTACTGTGACCTTCCTCAGCTTCTCAGACTAGCCTGTACCGACACCTACAGATTGCAGTTCATGGTCACTGTTAACAGTGGGTTTATCTGTGTGGGTACTTTCTTCATACTTCTAATCTCCTACGTCTTCATCCTGTTTACTGTTTGGAAACATTCCTCAGGTGGTTCATCCAAGGCCCTTTCCACTCTTTCAGCTCACAGCACAGCGGTCCTTTTGTTCTTTGGTCCACCCATGTTTGTGTATACATGGCCACACCCTAATTCACAGATGGACAAGTTTCTGGCTATTTTTGATGCAGTTCTCACTCCTTTTCTGAATCCAGTTGTCTATACATTCAGGAATAAGGAGATGAAGGCAGCAATAAAGAGAGTATGCAAACAGCTAGTGATTTACAAGAAGATCTCATAA</dnaseq>| | sequence = <dnaseq>TGGATGGAGAGAATCACTCAGTGGTATCTGAGTTTTTGTTTCTGGGACTCACTCATTCATGGGAGATCCAGCTCCTCCTCCTAGTGTTTTCCTCTGTGCTCTATGTGGCAAGCATTACTGGAAACATCCTCATTGTGTTTTCTGTGACCACTGACCCTCACTTACACTCCCCCATGTACTTTCTACTGGTCAGTCTCTCCTTCATTGACTTAGGAGCCTGCTCTGTCACTTCTCCCAAGATGATTTATGACCTGTTCAGAAAGCGCAAAGTCATCTCCTTTGGAGGCTGCATCGCTCAAATCTTCTTCATCCACGTCATTGGTGGTGTGGAGATGGTGCTGCTCATAGCCATGGCCTTTGACAGTTATGTGGCCCTATTAAGCCCCTCCACTATCTGACCATTATGAGCCCAAGAATGTGCCTTTCATTTCTGGCTGTTGCCTGGACCCTTGTTGTCAGTCACTCCCTGTTCCAACTGGCATTTCTTGTTAATTTACCCTTCTGTGGCCCTAATGTGTTGGACAGCTTCTACTGTGACCTTCCTCAGCTTCTCAGACTAGCCTGTACCGACACCTACAGATTGCAGTTCATGGTCACTGTTAACAGTGGGTTTATCTGTGTGGGTACTTTCTTCATACTTCTAATCTCCTACGTCTTCATCCTGTTTACTGTTTGGAAACATTCCTCAGGTGGTTCATCCAAGGCCCTTTCCACTCTTTCAGCTCACAGCACAGCGGTCCTTTTGTTCTTTGGTCCACCCATGTTTGTGTATACATGGCCACACCCTAATTCACAGATGGACAAGTTTCTGGCTATTTTTGATGCAGTTCTCACTCCTTTTCTGAATCCAGTTGTCTATACATTCAGGAATAAGGAGATGAAGGCAGCAATAAAGAGAGTATGCAAACAGCTAGTGATTTACAAGAAGATCTCATAA</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG024274]] |
Revision as of 09:32, 13 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT060109 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
937 nt |
| Genomic location |
chr19-:156279..157215 |
| Exon number |
1 |
| Exons |
156279..157215 |
| Genome context |
|
| Sequence |
000001 TGGATGGAGA GAATCACTCA GTGGTATCTG AGTTTTTGTT TCTGGGACTC ACTCATTCAT GGGAGATCCA GCTCCTCCTC 000080
000081 CTAGTGTTTT CCTCTGTGCT CTATGTGGCA AGCATTACTG GAAACATCCT CATTGTGTTT TCTGTGACCA CTGACCCTCA 000160 000161 CTTACACTCC CCCATGTACT TTCTACTGGT CAGTCTCTCC TTCATTGACT TAGGAGCCTG CTCTGTCACT TCTCCCAAGA 000240 000241 TGATTTATGA CCTGTTCAGA AAGCGCAAAG TCATCTCCTT TGGAGGCTGC ATCGCTCAAA TCTTCTTCAT CCACGTCATT 000320 000321 GGTGGTGTGG AGATGGTGCT GCTCATAGCC ATGGCCTTTG ACAGTTATGT GGCCCTATTA AGCCCCTCCA CTATCTGACC 000400 000401 ATTATGAGCC CAAGAATGTG CCTTTCATTT CTGGCTGTTG CCTGGACCCT TGTTGTCAGT CACTCCCTGT TCCAACTGGC 000480 000481 ATTTCTTGTT AATTTACCCT TCTGTGGCCC TAATGTGTTG GACAGCTTCT ACTGTGACCT TCCTCAGCTT CTCAGACTAG 000560 000561 CCTGTACCGA CACCTACAGA TTGCAGTTCA TGGTCACTGT TAACAGTGGG TTTATCTGTG TGGGTACTTT CTTCATACTT 000640 000641 CTAATCTCCT ACGTCTTCAT CCTGTTTACT GTTTGGAAAC ATTCCTCAGG TGGTTCATCC AAGGCCCTTT CCACTCTTTC 000720 000721 AGCTCACAGC ACAGCGGTCC TTTTGTTCTT TGGTCCACCC ATGTTTGTGT ATACATGGCC ACACCCTAAT TCACAGATGG 000800 000801 ACAAGTTTCT GGCTATTTTT GATGCAGTTC TCACTCCTTT TCTGAATCCA GTTGTCTATA CATTCAGGAA TAAGGAGATG 000880 000881 AAGGCAGCAA TAAAGAGAGT ATGCAAACAG CTAGTGATTT ACAAGAAGAT CTCATAA |
Predicted Small Protein
| Name | NONHSAT060109_smProtein_173:397 |
| Length | 75 |
| Molecular weight | 8169.8107 |
| Aromaticity | 0.135135135135 |
| Instability index | 52.9905405405 |
| Isoelectric point | 7.79437255859 |
| Runs | 13 |
| Runs residual | 0.0330257086355 |
| Runs probability | 0.0422390716509 |
| Amino acid sequence | MYFLLVSLSFIDLGACSVTSPKMIYDLFRKRKVISFGGCIAQIFFIHVIGGVEMVLLIAM AFDSYVALLSPSTI |
| Secondary structure | LEEEEEEEEEEELLLLLLLLHHHHHHHHHLLLEEELLLHHHHLHHHHHLLHHHHHHHHHH HHHHHHHHLLLLLL |
| PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHH HHLLLLLLLLLLLL |
| PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTTTT TToooooooooooo |
