Difference between revisions of "NONHSAT084715"

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sequence = <dnaseq>ATGGCATCGGGCTGCAAGATTGGCCTGTCCATCCTCAATGCTACCTGGCCAATTTAGGGGCCCAGTGCCTCTGGATGCTAGACTCTGGGGTCGATTATCTCCACCGGAATGTAATGGATGAACATGCATGTGATGGTGTCCAAGCCAGAACAGTGGGTAAAGCCAATGGCTATAAGAGGAGCCAATCAGTACATCTTTCATCTCGAGGAAACTGAGAACCCAGGGGCTTTGATTAAAGACATTCAGGAGAATGGGATGAAGGTTGGCCTTGCCATAAAACCAGGAACCTCAGTTCAGTATTTGGCACCATGGGCTAATCAACTAGGTATGACCTTGGTTATGACAGTGGAACCAGGGTTTGGAGGGCATAAATTCATGGAAGATATGATGTTAAAGGTTCACTGGTTGAGGATCCAGTTCCCATCTTTGGCTATAGAGGTCGCTGGTGGAATAGATCCTGACACTGTCCATAGGTGTGCAGAGGCGAAGCTAACATGATTGTGTCTGGCAGTGCTATGGTGAGGAGTGAAGACCCTAGATCTGTGATCAGCCTGTTAAGAAACATTTGCTCAGAAGCTGCTCAGAAAGATTCTCTTGATTGA</dnaseq>|
 
sequence = <dnaseq>ATGGCATCGGGCTGCAAGATTGGCCTGTCCATCCTCAATGCTACCTGGCCAATTTAGGGGCCCAGTGCCTCTGGATGCTAGACTCTGGGGTCGATTATCTCCACCGGAATGTAATGGATGAACATGCATGTGATGGTGTCCAAGCCAGAACAGTGGGTAAAGCCAATGGCTATAAGAGGAGCCAATCAGTACATCTTTCATCTCGAGGAAACTGAGAACCCAGGGGCTTTGATTAAAGACATTCAGGAGAATGGGATGAAGGTTGGCCTTGCCATAAAACCAGGAACCTCAGTTCAGTATTTGGCACCATGGGCTAATCAACTAGGTATGACCTTGGTTATGACAGTGGAACCAGGGTTTGGAGGGCATAAATTCATGGAAGATATGATGTTAAAGGTTCACTGGTTGAGGATCCAGTTCCCATCTTTGGCTATAGAGGTCGCTGGTGGAATAGATCCTGACACTGTCCATAGGTGTGCAGAGGCGAAGCTAACATGATTGTGTCTGGCAGTGCTATGGTGAGGAGTGAAGACCCTAGATCTGTGATCAGCCTGTTAAGAAACATTTGCTCAGAAGCTGCTCAGAAAGATTCTCTTGATTGA</dnaseq>|
 
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[[Category:Intronic(S)]]
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[[Category:Intronic(S)]][[Category:NONHSAG033646]]

Revision as of 09:52, 13 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT084715

Source

NONCODE4.0

Same with

,

Classification

intronic(S)

Length

602 nt

Genomic location

chr22+:30004889..30005490

Exon number

1

Exons

30004889..30005490

Genome context

Sequence
000001 ATGGCATCGG GCTGCAAGAT TGGCCTGTCC ATCCTCAATG CTACCTGGCC AATTTAGGGG CCCAGTGCCT CTGGATGCTA 000080
000081 GACTCTGGGG TCGATTATCT CCACCGGAAT GTAATGGATG AACATGCATG TGATGGTGTC CAAGCCAGAA CAGTGGGTAA 000160
000161 AGCCAATGGC TATAAGAGGA GCCAATCAGT ACATCTTTCA TCTCGAGGAA ACTGAGAACC CAGGGGCTTT GATTAAAGAC 000240
000241 ATTCAGGAGA ATGGGATGAA GGTTGGCCTT GCCATAAAAC CAGGAACCTC AGTTCAGTAT TTGGCACCAT GGGCTAATCA 000320
000321 ACTAGGTATG ACCTTGGTTA TGACAGTGGA ACCAGGGTTT GGAGGGCATA AATTCATGGA AGATATGATG TTAAAGGTTC 000400
000401 ACTGGTTGAG GATCCAGTTC CCATCTTTGG CTATAGAGGT CGCTGGTGGA ATAGATCCTG ACACTGTCCA TAGGTGTGCA 000480
000481 GAGGCGAAGC TAACATGATT GTGTCTGGCA GTGCTATGGT GAGGAGTGAA GACCCTAGAT CTGTGATCAG CCTGTTAAGA 000560
000561 AACATTTGCT CAGAAGCTGC TCAGAAAGAT TCTCTTGATT GA
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Predicted Small Protein

Name NONHSAT084715_smProtein_74:214
Length 47
Molecular weight 5060.5401
Aromaticity 0.0434782608696
Instability index 51.7413043478
Isoelectric point 7.97979736328
Runs 9
Runs residual 0.0342908902692
Runs probability 0.0480186068422
Amino acid sequence MLDSGVDYLHRNVMDEHACDGVQARTVGKANGYKRSQSVHLSSRGN
Secondary structure LLLLLLLHHHHHLLLHHHLLLEEEEEEEELLLLEEEEEEEEEELLL
PRMN -
PiMo -