Difference between revisions of "NONHSAT033274"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>GTTATTTTTTTGCTAACACTTTGGCTAACTTTTAAAAAACATTCTCATAATAAGCAGATGTTATCATTCTTTAGCTCTTCAGAAAATCAACAAGTGAAACGCCCCGGGCATCACGAAAACCTGTTGCTGCGACCTTTGCTATTGACCAGTCCATTTGTGTTTTGACTGGACCACTTCCACCTCTTGGTAGCTGTTGTTTTTACTATGCTTTGTATTCTGGATTGTACTGGTAAAGCTATGTTTCTTCTCCTGTTATAATTCTTCAAAGAAATGCTTCAGGATCTTTATCCAACTTGTTTACAGTTTCTGTTGAAAGCTCTGATCTTATCTGCAGCCGATCTGGGAGAAACTGTTTTTGCACCCACTGAGTGAAAAGTTTGCTCAACTTTAATTTGCCAGTCAGAATGTTGTAAGCTGAACTAATGGAGATGTTTTTGGTGTTGGCTATTGTTTCTGCTGTTAATGTCAGTCCTTTTTCAATTAAGGCATTAACAAGATTAGTTTATTTCTCACAAATTAATGTGGATGGTCTGCCATTGCAGGCTTCATCTTCAGCGTTGTCTCCTCCCTTGTTAAAACAAGTTATCCATTTGTAAACTATTAGTTTATTTGGAACATTGTCCTCATAAACTTTTTGTAAAGGATCAGTGATTTCACCATTCTTCCACCCAAGCTTCACCATCAATTTGATGTTTCTTCTTGCTTCCATTTTAACAAAATTCATGTTGCTTTTATAGGGGCTCTTTTCAAACCGATGTCTTATTCTTAATGCCTCAGAGTAGATCATGTCAGACATGTTATAACAAGTTAGTACAGTTTTATTTTGGTGCAAAAAATTGAAATCCATGAATAGTTTTTTCATACTATGCATTTTCCCTGAATTTTCTGAACACCCTTCAATTAATCTAAGGTAACTCTGCCTCTAAGTTTTTGAGACAGGGTCTTACCCTGCTACCCAGGATAGAGTGCATTGGCAAGATCATGGCTCACTGTACCTTCAGACTTCTGGGCTCAAGTGATCCTCTTGCCTTAGCCTCTTGAGCAGCTAAAACTACAGACATGTGTCATCACACCCAGGTA</dnaseq>| | sequence = <dnaseq>GTTATTTTTTTGCTAACACTTTGGCTAACTTTTAAAAAACATTCTCATAATAAGCAGATGTTATCATTCTTTAGCTCTTCAGAAAATCAACAAGTGAAACGCCCCGGGCATCACGAAAACCTGTTGCTGCGACCTTTGCTATTGACCAGTCCATTTGTGTTTTGACTGGACCACTTCCACCTCTTGGTAGCTGTTGTTTTTACTATGCTTTGTATTCTGGATTGTACTGGTAAAGCTATGTTTCTTCTCCTGTTATAATTCTTCAAAGAAATGCTTCAGGATCTTTATCCAACTTGTTTACAGTTTCTGTTGAAAGCTCTGATCTTATCTGCAGCCGATCTGGGAGAAACTGTTTTTGCACCCACTGAGTGAAAAGTTTGCTCAACTTTAATTTGCCAGTCAGAATGTTGTAAGCTGAACTAATGGAGATGTTTTTGGTGTTGGCTATTGTTTCTGCTGTTAATGTCAGTCCTTTTTCAATTAAGGCATTAACAAGATTAGTTTATTTCTCACAAATTAATGTGGATGGTCTGCCATTGCAGGCTTCATCTTCAGCGTTGTCTCCTCCCTTGTTAAAACAAGTTATCCATTTGTAAACTATTAGTTTATTTGGAACATTGTCCTCATAAACTTTTTGTAAAGGATCAGTGATTTCACCATTCTTCCACCCAAGCTTCACCATCAATTTGATGTTTCTTCTTGCTTCCATTTTAACAAAATTCATGTTGCTTTTATAGGGGCTCTTTTCAAACCGATGTCTTATTCTTAATGCCTCAGAGTAGATCATGTCAGACATGTTATAACAAGTTAGTACAGTTTTATTTTGGTGCAAAAAATTGAAATCCATGAATAGTTTTTTCATACTATGCATTTTCCCTGAATTTTCTGAACACCCTTCAATTAATCTAAGGTAACTCTGCCTCTAAGTTTTTGAGACAGGGTCTTACCCTGCTACCCAGGATAGAGTGCATTGGCAAGATCATGGCTCACTGTACCTTCAGACTTCTGGGCTCAAGTGATCCTCTTGCCTTAGCCTCTTGAGCAGCTAAAACTACAGACATGTGTCATCACACCCAGGTA</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG013269]] |
Revision as of 09:58, 13 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT033274 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
1080 nt |
| Genomic location |
chr13+:38946993..38948072 |
| Exon number |
1 |
| Exons |
38946993..38948072 |
| Genome context |
|
| Sequence |
000001 GTTATTTTTT TGCTAACACT TTGGCTAACT TTTAAAAAAC ATTCTCATAA TAAGCAGATG TTATCATTCT TTAGCTCTTC 000080
000081 AGAAAATCAA CAAGTGAAAC GCCCCGGGCA TCACGAAAAC CTGTTGCTGC GACCTTTGCT ATTGACCAGT CCATTTGTGT 000160 000161 TTTGACTGGA CCACTTCCAC CTCTTGGTAG CTGTTGTTTT TACTATGCTT TGTATTCTGG ATTGTACTGG TAAAGCTATG 000240 000241 TTTCTTCTCC TGTTATAATT CTTCAAAGAA ATGCTTCAGG ATCTTTATCC AACTTGTTTA CAGTTTCTGT TGAAAGCTCT 000320 000321 GATCTTATCT GCAGCCGATC TGGGAGAAAC TGTTTTTGCA CCCACTGAGT GAAAAGTTTG CTCAACTTTA ATTTGCCAGT 000400 000401 CAGAATGTTG TAAGCTGAAC TAATGGAGAT GTTTTTGGTG TTGGCTATTG TTTCTGCTGT TAATGTCAGT CCTTTTTCAA 000480 000481 TTAAGGCATT AACAAGATTA GTTTATTTCT CACAAATTAA TGTGGATGGT CTGCCATTGC AGGCTTCATC TTCAGCGTTG 000560 000561 TCTCCTCCCT TGTTAAAACA AGTTATCCAT TTGTAAACTA TTAGTTTATT TGGAACATTG TCCTCATAAA CTTTTTGTAA 000640 000641 AGGATCAGTG ATTTCACCAT TCTTCCACCC AAGCTTCACC ATCAATTTGA TGTTTCTTCT TGCTTCCATT TTAACAAAAT 000720 000721 TCATGTTGCT TTTATAGGGG CTCTTTTCAA ACCGATGTCT TATTCTTAAT GCCTCAGAGT AGATCATGTC AGACATGTTA 000800 000801 TAACAAGTTA GTACAGTTTT ATTTTGGTGC AAAAAATTGA AATCCATGAA TAGTTTTTTC ATACTATGCA TTTTCCCTGA 000880 000881 ATTTTCTGAA CACCCTTCAA TTAATCTAAG GTAACTCTGC CTCTAAGTTT TTGAGACAGG GTCTTACCCT GCTACCCAGG 000960 000961 ATAGAGTGCA TTGGCAAGAT CATGGCTCAC TGTACCTTCA GACTTCTGGG CTCAAGTGAT CCTCTTGCCT TAGCCTCTTG 001040 001041 AGCAGCTAAA ACTACAGACA TGTGTCATCA CACCCAGGTA |
Predicted Small Protein
| Name | NONHSAT033274_smProtein_422:595 |
| Length | 58 |
| Molecular weight | 6168.313 |
| Aromaticity | 0.0701754385965 |
| Instability index | 47.7964912281 |
| Isoelectric point | 8.27508544922 |
| Runs | 9 |
| Runs residual | 0.00394736842105 |
| Runs probability | 0.0351527998587 |
| Amino acid sequence | MEMFLVLAIVSAVNVSPFSIKALTRLVYFSQINVDGLPLQASSSALSPPLLKQVIHL |
| Secondary structure | LEEEEHHHHHHHHLLLHHHHHHHHHHHHHHEEELLLLLLLLLLLLLLLHHHHHHHLL |
| PRMN | LLLLHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL |
| PiMo | ooooTTTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii |
