Difference between revisions of "ENST00000504719.2"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>CTCCGGGCAGAGCGCGTGTGGCGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCAGACCATAGCTGTCTGCAGTGCAGGAAGCCAACTATTAAGGGGAAACAAAAGTGTTCTTAGGAGTCCTGCTGTCACTGTGGATTGAGCCGGTGAAGCCCTGAGGGATTTCATCGCTGAGGTGGATGGAGAAGCAGCTGGGGGCCTTGGCTGTAAGGACCCCTAAGGGCCTGATCTTTTGGCCAGAAGGAGATTAAAAAGATGCCCCTCAAGATGGCTGTGCCTGTCAGCTGCATGGAGCTTCGTTCAAGTATTTTCTGAGCCTGATGGATTTACAGTGATCTTCAGTGGTCTGGGGAATAACGCTGGTGGAACCATGCACTGGAATGACACACGCCCGGCACATTTCAGGATACTAAAAGTGGTTTTAAGGGAGGCTGTGGCTGAATGCCTCATGGATTCTTACAGCTTGGATGTCCATGGGGGACGAAGGACTGCAGCTGGCTGAGAGGGTTGAGATCTCTGTTTACTTAGATCTCTGCCAACTTCCTTTGGGTCTCCCTATGGAATGTAAGACCCCGACTCTTCCTGGTGAAGCATCTGATGCACGTTCCA</dnaseq>| | sequence = <dnaseq>CTCCGGGCAGAGCGCGTGTGGCGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCAGACCATAGCTGTCTGCAGTGCAGGAAGCCAACTATTAAGGGGAAACAAAAGTGTTCTTAGGAGTCCTGCTGTCACTGTGGATTGAGCCGGTGAAGCCCTGAGGGATTTCATCGCTGAGGTGGATGGAGAAGCAGCTGGGGGCCTTGGCTGTAAGGACCCCTAAGGGCCTGATCTTTTGGCCAGAAGGAGATTAAAAAGATGCCCCTCAAGATGGCTGTGCCTGTCAGCTGCATGGAGCTTCGTTCAAGTATTTTCTGAGCCTGATGGATTTACAGTGATCTTCAGTGGTCTGGGGAATAACGCTGGTGGAACCATGCACTGGAATGACACACGCCCGGCACATTTCAGGATACTAAAAGTGGTTTTAAGGGAGGCTGTGGCTGAATGCCTCATGGATTCTTACAGCTTGGATGTCCATGGGGGACGAAGGACTGCAGCTGGCTGAGAGGGTTGAGATCTCTGTTTACTTAGATCTCTGCCAACTTCCTTTGGGTCTCCCTATGGAATGTAAGACCCCGACTCTTCCTGGTGAAGCATCTGATGCACGTTCCA</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:lnc-MYC-2]] |
Revision as of 10:04, 13 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
ENST00000504719.2 |
| Source |
Gencode19 |
| Same with |
lnc-MYC-2:1,NONHSAT147662 |
| Classification |
intergenic |
| Length |
754 nt |
| Genomic location |
chr8+:128806779..128903221 |
| Exon number |
3 |
| Exons |
128806779..128806980,128867401..128867565,128902835..128903221 |
| Genome context |
|
| Sequence |
000001 CTCCGGGCAG AGCGCGTGTG GCGGCCGAGC ACATGGGCCC GCGGGCCGGG CGGGCTCGGG GCGGCCGGGA CGAGGAGGGG 000080
000081 CGACGACGAG CTGCGAGCAA AGATGTGCCC CGGGACCCCC GGCACCTTCC AGTGGATTTC CTTGCGGAAA GGATGTTGGC 000160 000161 GGTCCCTGTG ACCTGTGGAG ACACGGCCAG ATCTGCCCTC CAGACCATAG CTGTCTGCAG TGCAGGAAGC CAACTATTAA 000240 000241 GGGGAAACAA AAGTGTTCTT AGGAGTCCTG CTGTCACTGT GGATTGAGCC GGTGAAGCCC TGAGGGATTT CATCGCTGAG 000320 000321 GTGGATGGAG AAGCAGCTGG GGGCCTTGGC TGTAAGGACC CCTAAGGGCC TGATCTTTTG GCCAGAAGGA GATTAAAAAG 000400 000401 ATGCCCCTCA AGATGGCTGT GCCTGTCAGC TGCATGGAGC TTCGTTCAAG TATTTTCTGA GCCTGATGGA TTTACAGTGA 000480 000481 TCTTCAGTGG TCTGGGGAAT AACGCTGGTG GAACCATGCA CTGGAATGAC ACACGCCCGG CACATTTCAG GATACTAAAA 000560 000561 GTGGTTTTAA GGGAGGCTGT GGCTGAATGC CTCATGGATT CTTACAGCTT GGATGTCCAT GGGGGACGAA GGACTGCAGC 000640 000641 TGGCTGAGAG GGTTGAGATC TCTGTTTACT TAGATCTCTG CCAACTTCCT TTGGGTCTCC CTATGGAATG TAAGACCCCG 000720 000721 ACTCTTCCTG GTGAAGCATC TGATGCACGT TCCA |
Predicted Small Protein
| Name | ENST00000504719.2_smProtein_32:286 |
| Length | 85 |
| Molecular weight | 8952.139 |
| Aromaticity | 0.0119047619048 |
| Instability index | 60.1785714286 |
| Isoelectric point | 11.0068969727 |
| Runs | 14 |
| Runs residual | 0.0326812253564 |
| Runs probability | 0.0495243142302 |
| Amino acid sequence | MGPRAGRARGGRDEEGRRRAASKDVPRDPRHLPVDFLAERMLAVPVTCGDTARSALQTIA VCSAGSQLLRGNKSVLRSPAVTVD |
| Secondary structure | LLLLLLLLLLLLLHHHHHHHHHLLLLLLLLLLLHHHHHHHHHLLLLLLLLHHHHHHHHHH EEELLLEEELLLLEEEELLLEEEL |
| PRMN | - |
| PiMo | - |
