Difference between revisions of "NONHSAT127805"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>CCACGCGCCTGGCCAAGTGCGGCTCTGCTCTCCCCAGTCCCGGTCCGCGACCACCCGGAGCCCGCTCCGCCGGCCTTGCGCGGCGCGCCCAGGGAAGGCATTTCCAGCCCGCCCACCCAGTGGGATTACAGGCATGAGCCACTGCACCTGGCCAATTTTTTAAATTAGAATCAGGTGAGATGCAGTTTTAAAAACAATTTTATTGTTAAACAAATACATTTTACTGTAAGATAGTTTTGACTTCACATTCTACTTTGAAGCGTCATTGAGACCTCTAGATGTCCACAGAACACACTTTGAGAACTGCATACATAGTTGCCCAAACCAGAATCCTGGGAGTGAACTTAGTCATTCCTTTTTTCTTCTTTTCTGAGCTTCATAATCATAGTTAATATTTCCTGGGTAAGATAATGTGCTAGGCTGTACCCCAAGCCTTCACATACTATTAACTCCTTCAATCTTCCACCAACACTATAAGACAGGTGCTAATGACTGTCATTCCTGGTTTATAAATGAGGAAGCTGAGGCACAAGTGTAGTTTGCCTAAGATCCACAGTAGAGTCTGACTCCAGCTCACCTGTGCTGTGCTGCCTCCATTTATCACCAAATTCCTTTCTCTTCTGTTCCCAAGTCATTTCCACATTCATGCTTTATTTCCCTCTGCCTTAGTTCAGGACACCATTCTCTCTTCAGTGCAATACTCTTCTAACTGGTTTTCCTGACATGCATTGCCTCTTGCCTTGGCAACAGGGATTGTTTCATGATAGGACAAATGTTCCAAGCAGGGCCAAAGTCCTTCCCTCCACGTGAGCTAGCCAAGAAGCCTGCCTCTTGCCTCTAGGGTCACTGTGTCAAAGAATGTTCACCTGGGGGACCTCCCATCTGCAGCACTAAAGGACATGCTGACACAGAGCAGAGGGAGTGTCCTGGTTTAAGTCGTGGATCCACCTTGGTGGTTCCTAGTAATGAAAGCCAGTCCATCACATTTTAGCTTAAGATTATTTTGAGTCAGTTTTATCATGTGCAACTGAGAGGATCATGACAAATACACTTGACCTTGTTCTGCCATTGCCCCTGTGCTTTATCTATTTGTATACATTACACTATAGGGTAGTTGTAATTGCCTGTTTATTTGTCTGTGTCTCCCACTAGAAGTTCTTAATTGCACCGTCAACATTATGTATC</dnaseq>| | sequence = <dnaseq>CCACGCGCCTGGCCAAGTGCGGCTCTGCTCTCCCCAGTCCCGGTCCGCGACCACCCGGAGCCCGCTCCGCCGGCCTTGCGCGGCGCGCCCAGGGAAGGCATTTCCAGCCCGCCCACCCAGTGGGATTACAGGCATGAGCCACTGCACCTGGCCAATTTTTTAAATTAGAATCAGGTGAGATGCAGTTTTAAAAACAATTTTATTGTTAAACAAATACATTTTACTGTAAGATAGTTTTGACTTCACATTCTACTTTGAAGCGTCATTGAGACCTCTAGATGTCCACAGAACACACTTTGAGAACTGCATACATAGTTGCCCAAACCAGAATCCTGGGAGTGAACTTAGTCATTCCTTTTTTCTTCTTTTCTGAGCTTCATAATCATAGTTAATATTTCCTGGGTAAGATAATGTGCTAGGCTGTACCCCAAGCCTTCACATACTATTAACTCCTTCAATCTTCCACCAACACTATAAGACAGGTGCTAATGACTGTCATTCCTGGTTTATAAATGAGGAAGCTGAGGCACAAGTGTAGTTTGCCTAAGATCCACAGTAGAGTCTGACTCCAGCTCACCTGTGCTGTGCTGCCTCCATTTATCACCAAATTCCTTTCTCTTCTGTTCCCAAGTCATTTCCACATTCATGCTTTATTTCCCTCTGCCTTAGTTCAGGACACCATTCTCTCTTCAGTGCAATACTCTTCTAACTGGTTTTCCTGACATGCATTGCCTCTTGCCTTGGCAACAGGGATTGTTTCATGATAGGACAAATGTTCCAAGCAGGGCCAAAGTCCTTCCCTCCACGTGAGCTAGCCAAGAAGCCTGCCTCTTGCCTCTAGGGTCACTGTGTCAAAGAATGTTCACCTGGGGGACCTCCCATCTGCAGCACTAAAGGACATGCTGACACAGAGCAGAGGGAGTGTCCTGGTTTAAGTCGTGGATCCACCTTGGTGGTTCCTAGTAATGAAAGCCAGTCCATCACATTTTAGCTTAAGATTATTTTGAGTCAGTTTTATCATGTGCAACTGAGAGGATCATGACAAATACACTTGACCTTGTTCTGCCATTGCCCCTGTGCTTTATCTATTTGTATACATTACACTATAGGGTAGTTGTAATTGCCTGTTTATTTGTCTGTGTCTCCCACTAGAAGTTCTTAATTGCACCGTCAACATTATGTATC</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG050800]] |
Revision as of 10:11, 13 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT127805 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
1185 nt |
| Genomic location |
chr8+:95908036..95919169 |
| Exon number |
3 |
| Exons |
95908036..95908155,95911394..95912011,95918723..95919169 |
| Genome context |
|
| Sequence |
000001 CCACGCGCCT GGCCAAGTGC GGCTCTGCTC TCCCCAGTCC CGGTCCGCGA CCACCCGGAG CCCGCTCCGC CGGCCTTGCG 000080
000081 CGGCGCGCCC AGGGAAGGCA TTTCCAGCCC GCCCACCCAG TGGGATTACA GGCATGAGCC ACTGCACCTG GCCAATTTTT 000160 000161 TAAATTAGAA TCAGGTGAGA TGCAGTTTTA AAAACAATTT TATTGTTAAA CAAATACATT TTACTGTAAG ATAGTTTTGA 000240 000241 CTTCACATTC TACTTTGAAG CGTCATTGAG ACCTCTAGAT GTCCACAGAA CACACTTTGA GAACTGCATA CATAGTTGCC 000320 000321 CAAACCAGAA TCCTGGGAGT GAACTTAGTC ATTCCTTTTT TCTTCTTTTC TGAGCTTCAT AATCATAGTT AATATTTCCT 000400 000401 GGGTAAGATA ATGTGCTAGG CTGTACCCCA AGCCTTCACA TACTATTAAC TCCTTCAATC TTCCACCAAC ACTATAAGAC 000480 000481 AGGTGCTAAT GACTGTCATT CCTGGTTTAT AAATGAGGAA GCTGAGGCAC AAGTGTAGTT TGCCTAAGAT CCACAGTAGA 000560 000561 GTCTGACTCC AGCTCACCTG TGCTGTGCTG CCTCCATTTA TCACCAAATT CCTTTCTCTT CTGTTCCCAA GTCATTTCCA 000640 000641 CATTCATGCT TTATTTCCCT CTGCCTTAGT TCAGGACACC ATTCTCTCTT CAGTGCAATA CTCTTCTAAC TGGTTTTCCT 000720 000721 GACATGCATT GCCTCTTGCC TTGGCAACAG GGATTGTTTC ATGATAGGAC AAATGTTCCA AGCAGGGCCA AAGTCCTTCC 000800 000801 CTCCACGTGA GCTAGCCAAG AAGCCTGCCT CTTGCCTCTA GGGTCACTGT GTCAAAGAAT GTTCACCTGG GGGACCTCCC 000880 000881 ATCTGCAGCA CTAAAGGACA TGCTGACACA GAGCAGAGGG AGTGTCCTGG TTTAAGTCGT GGATCCACCT TGGTGGTTCC 000960 000961 TAGTAATGAA AGCCAGTCCA TCACATTTTA GCTTAAGATT ATTTTGAGTC AGTTTTATCA TGTGCAACTG AGAGGATCAT 001040 001041 GACAAATACA CTTGACCTTG TTCTGCCATT GCCCCTGTGC TTTATCTATT TGTATACATT ACACTATAGG GTAGTTGTAA 001120 001121 TTGCCTGTTT ATTTGTCTGT GTCTCCCACT AGAAGTTCTT AATTGCACCG TCAACATTAT GTATC |
Predicted Small Protein
| Name | NONHSAT127805_smProtein_278:391 |
| Length | 38 |
| Molecular weight | 4290.8974 |
| Aromaticity | 0.135135135135 |
| Instability index | 46.8837837838 |
| Isoelectric point | 6.81207275391 |
| Runs | 6 |
| Runs residual | 0.017604760724 |
| Runs probability | 0.0374344933169 |
| Amino acid sequence | MSTEHTLRTAYIVAQTRILGVNLVIPFFFFSELHNHS |
| Secondary structure | LLLLLHHHHHHHHHHHHHHLLLEEEEEEEEHHHLLLL |
| PRMN | LLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLL |
| PiMo | iiiiiiiiiiiiiTTTTTTTTTTTTTTTTTToooooo |
