Difference between revisions of "NONHSAT106576"

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sequence = <dnaseq>GTCTTCAACTGACCAATATTTGAAGAACAATGTGCTTATTCTGCTCCATTTGGAGGAGGCCAATCTCTTGAGAAGCAAATCATACATACATAAAACCATGAATTTTAGAGGCAAATTTAATAACAGGAACTACCTCTGTCTTGTTCACCAGTATGTGTATGGGAAAACACACCCTACACTGAACAGGAGATATATCTTATTTTCTTTTGAATATTGCTTATGGTACTGTAGGAAAGCAGAGGAATTGAGAAATAGAAATTAGTTCAAAGTAAAGGGGAAAAAAATCACTATCCAAGTTGGAGTTCAGCAAAAAGTTACTTATGACAATTAACTAAAAATCCATATTTTGCCAATAACCAACAGGCAAATAAAAAACCAACATTCAATGTTCAATTCAAAATAGCCAGTGAGGGAGAGGCACCAATTAGAAGCAGCTGCAGTCCATGGCACTCATGGAGAGGAGTGAAAGGGGTGAGTGAATACAGTTCTCCCACAGATCTTTGCAACCCACGGATCAGGAGATCCCCTCGTGAGCCCATGCTACCAGGGCCTTGAGTCTGACACACAGAGCTGTGTGGAGTCTTGGCCCCTGTCCAGCCTGGCCCTGCCTTCCCTGGTCTGGAGCACATCCAATTCTCTCTCTCCCCAGGACTTTGATCACTTCATTTTGCCCAAATTCTCCTCTGATCCCTATGGTTGTTCTTTATTCCCCAAGGGGTATTTCTAGCCCAGTACCCCCGCTGAGCTCCAGACTCACACTACACAACGAATTGGCCCTTAACTGGGCACTCTGCGAGCCTCTCCATCTCACCCTGTCTAAAATCTCCTCACTAACCTGGTGATCTCTCTGGCCTTCGCTGTTCATGGCCACCACCTCACCTGAAGCAAGGCTGGTGATCATCCACTCCTCCCTCCCCTTCTTCAGGCTAACCTCAGGTCTTCTCTGCTCTGCACTTCCCACAAAAAGCACAGTGACATTTCAATAGGACTATATTTGAAATAGTTTATGAATGAAAAGAAAGAACTATTAAAGGGAAAATGATGCAGCACCACAGATGTGAGTAGATCGTCCAGCTGCTTTTCCTACAGAATAAATACTAGATTCTCTCGGGAACGCTCACAGTGCTCTGTCACCTGGATGCAGTCCCATCTCCTCTCCCTTGCCCCAGCCTTGCCCAGCCCACACTGCACTGTATATCCAGTCCACCAAACTTCTCTTCCTTCTCGGAGGGTATGGGTATTCTCGCTTCTATGCTGGCTCGTGGTTTTGTTAGTTTCATTGCTGCCTTAGTCATGTGGGGGAATTCCTGACCAATTCATCCTTCTTTTTAATCCCTCAATCCTGAATTAGGTAACTTTTCCTCTATCACTTTCAACATTACATTATCAGCTGCAATAGAAGACCCTACACTTCTGACTTGTGGACTCCTGAGAGCAAGGTCTGTGATTATTCCACATGTGTATGGACAACACCTCTGCAGAGGGCCTGGCAGCTGCTAGATGCTCAATAAACCTCTGCCGAAGGCAGCTGCTAAAAGAAAAAAGAAAATCTTACTACGGAAAGTAAAAGATGATCCTCAGGCAAGAAACAAAAAAGTGCGACGGAAGCTCTGTTTCTATCTCTTCAGGGCCGTGCTTCATTATTATTTCCTCATTCTCCAATTCCTCACAAAGCTCTATTTTATAAATGTTTGCAGAGCTTTAAGTTAATCCTAACATTTACTCTCCAGCCCTCAATCTTTAATGACTCCTTCTCTAAAAAAAAAAAAGGCAGAAAAAGTAAAGATTTATATAAGTTCAAAAGAAACTTAAAAATCCAGACAAAGACTTATCATCAGCCACGTATGGAATGTGAGTGGATTCTTGCCTAAAAAGCTAGCTCTAGCTGCAAATTTCCTATATTCTCCCAGTGCCACGGGACGGTGATGAGAGGTCTCCCACTCCATGGGGCTCTGCCCACCTCTGCTCACCCACTCCACACCTCCCACCACACTTTTCTAGTGCTTGAAGGAAGTGAAGACAGTAGCCTTTAACATGTTCCATTACAGCAACTGCTTTGGTGTAGTGACTTACAAGGAAGCCTGCAAAGGAG</dnaseq>|
 
sequence = <dnaseq>GTCTTCAACTGACCAATATTTGAAGAACAATGTGCTTATTCTGCTCCATTTGGAGGAGGCCAATCTCTTGAGAAGCAAATCATACATACATAAAACCATGAATTTTAGAGGCAAATTTAATAACAGGAACTACCTCTGTCTTGTTCACCAGTATGTGTATGGGAAAACACACCCTACACTGAACAGGAGATATATCTTATTTTCTTTTGAATATTGCTTATGGTACTGTAGGAAAGCAGAGGAATTGAGAAATAGAAATTAGTTCAAAGTAAAGGGGAAAAAAATCACTATCCAAGTTGGAGTTCAGCAAAAAGTTACTTATGACAATTAACTAAAAATCCATATTTTGCCAATAACCAACAGGCAAATAAAAAACCAACATTCAATGTTCAATTCAAAATAGCCAGTGAGGGAGAGGCACCAATTAGAAGCAGCTGCAGTCCATGGCACTCATGGAGAGGAGTGAAAGGGGTGAGTGAATACAGTTCTCCCACAGATCTTTGCAACCCACGGATCAGGAGATCCCCTCGTGAGCCCATGCTACCAGGGCCTTGAGTCTGACACACAGAGCTGTGTGGAGTCTTGGCCCCTGTCCAGCCTGGCCCTGCCTTCCCTGGTCTGGAGCACATCCAATTCTCTCTCTCCCCAGGACTTTGATCACTTCATTTTGCCCAAATTCTCCTCTGATCCCTATGGTTGTTCTTTATTCCCCAAGGGGTATTTCTAGCCCAGTACCCCCGCTGAGCTCCAGACTCACACTACACAACGAATTGGCCCTTAACTGGGCACTCTGCGAGCCTCTCCATCTCACCCTGTCTAAAATCTCCTCACTAACCTGGTGATCTCTCTGGCCTTCGCTGTTCATGGCCACCACCTCACCTGAAGCAAGGCTGGTGATCATCCACTCCTCCCTCCCCTTCTTCAGGCTAACCTCAGGTCTTCTCTGCTCTGCACTTCCCACAAAAAGCACAGTGACATTTCAATAGGACTATATTTGAAATAGTTTATGAATGAAAAGAAAGAACTATTAAAGGGAAAATGATGCAGCACCACAGATGTGAGTAGATCGTCCAGCTGCTTTTCCTACAGAATAAATACTAGATTCTCTCGGGAACGCTCACAGTGCTCTGTCACCTGGATGCAGTCCCATCTCCTCTCCCTTGCCCCAGCCTTGCCCAGCCCACACTGCACTGTATATCCAGTCCACCAAACTTCTCTTCCTTCTCGGAGGGTATGGGTATTCTCGCTTCTATGCTGGCTCGTGGTTTTGTTAGTTTCATTGCTGCCTTAGTCATGTGGGGGAATTCCTGACCAATTCATCCTTCTTTTTAATCCCTCAATCCTGAATTAGGTAACTTTTCCTCTATCACTTTCAACATTACATTATCAGCTGCAATAGAAGACCCTACACTTCTGACTTGTGGACTCCTGAGAGCAAGGTCTGTGATTATTCCACATGTGTATGGACAACACCTCTGCAGAGGGCCTGGCAGCTGCTAGATGCTCAATAAACCTCTGCCGAAGGCAGCTGCTAAAAGAAAAAAGAAAATCTTACTACGGAAAGTAAAAGATGATCCTCAGGCAAGAAACAAAAAAGTGCGACGGAAGCTCTGTTTCTATCTCTTCAGGGCCGTGCTTCATTATTATTTCCTCATTCTCCAATTCCTCACAAAGCTCTATTTTATAAATGTTTGCAGAGCTTTAAGTTAATCCTAACATTTACTCTCCAGCCCTCAATCTTTAATGACTCCTTCTCTAAAAAAAAAAAAGGCAGAAAAAGTAAAGATTTATATAAGTTCAAAAGAAACTTAAAAATCCAGACAAAGACTTATCATCAGCCACGTATGGAATGTGAGTGGATTCTTGCCTAAAAAGCTAGCTCTAGCTGCAAATTTCCTATATTCTCCCAGTGCCACGGGACGGTGATGAGAGGTCTCCCACTCCATGGGGCTCTGCCCACCTCTGCTCACCCACTCCACACCTCCCACCACACTTTTCTAGTGCTTGAAGGAAGTGAAGACAGTAGCCTTTAACATGTTCCATTACAGCAACTGCTTTGGTGTAGTGACTTACAAGGAAGCCTGCAAAGGAG</dnaseq>|
 
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[[Category:Intronic(AS)]]
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[[Category:Intronic(AS)]][[Category:NONHSAG042627]]

Revision as of 10:17, 13 October 2014

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT106576

Source

NONCODE4.0

Same with

,

Classification

intronic(AS)

Length

2092 nt

Genomic location

chr6+:1976469..1994306

Exon number

10

Exons

1976469..1976625,1977093..1977153,1977269..1977360,1977484..1977544,1977665..1977778,1977962..1978063,1990010..1990055,1991811..1991882,1992403..1992646,1993164..1994306

Genome context

Sequence
000001 GTCTTCAACT GACCAATATT TGAAGAACAA TGTGCTTATT CTGCTCCATT TGGAGGAGGC CAATCTCTTG AGAAGCAAAT 000080
000081 CATACATACA TAAAACCATG AATTTTAGAG GCAAATTTAA TAACAGGAAC TACCTCTGTC TTGTTCACCA GTATGTGTAT 000160
000161 GGGAAAACAC ACCCTACACT GAACAGGAGA TATATCTTAT TTTCTTTTGA ATATTGCTTA TGGTACTGTA GGAAAGCAGA 000240
000241 GGAATTGAGA AATAGAAATT AGTTCAAAGT AAAGGGGAAA AAAATCACTA TCCAAGTTGG AGTTCAGCAA AAAGTTACTT 000320
000321 ATGACAATTA ACTAAAAATC CATATTTTGC CAATAACCAA CAGGCAAATA AAAAACCAAC ATTCAATGTT CAATTCAAAA 000400
000401 TAGCCAGTGA GGGAGAGGCA CCAATTAGAA GCAGCTGCAG TCCATGGCAC TCATGGAGAG GAGTGAAAGG GGTGAGTGAA 000480
000481 TACAGTTCTC CCACAGATCT TTGCAACCCA CGGATCAGGA GATCCCCTCG TGAGCCCATG CTACCAGGGC CTTGAGTCTG 000560
000561 ACACACAGAG CTGTGTGGAG TCTTGGCCCC TGTCCAGCCT GGCCCTGCCT TCCCTGGTCT GGAGCACATC CAATTCTCTC 000640
000641 TCTCCCCAGG ACTTTGATCA CTTCATTTTG CCCAAATTCT CCTCTGATCC CTATGGTTGT TCTTTATTCC CCAAGGGGTA 000720
000721 TTTCTAGCCC AGTACCCCCG CTGAGCTCCA GACTCACACT ACACAACGAA TTGGCCCTTA ACTGGGCACT CTGCGAGCCT 000800
000801 CTCCATCTCA CCCTGTCTAA AATCTCCTCA CTAACCTGGT GATCTCTCTG GCCTTCGCTG TTCATGGCCA CCACCTCACC 000880
000881 TGAAGCAAGG CTGGTGATCA TCCACTCCTC CCTCCCCTTC TTCAGGCTAA CCTCAGGTCT TCTCTGCTCT GCACTTCCCA 000960
000961 CAAAAAGCAC AGTGACATTT CAATAGGACT ATATTTGAAA TAGTTTATGA ATGAAAAGAA AGAACTATTA AAGGGAAAAT 001040
001041 GATGCAGCAC CACAGATGTG AGTAGATCGT CCAGCTGCTT TTCCTACAGA ATAAATACTA GATTCTCTCG GGAACGCTCA 001120
001121 CAGTGCTCTG TCACCTGGAT GCAGTCCCAT CTCCTCTCCC TTGCCCCAGC CTTGCCCAGC CCACACTGCA CTGTATATCC 001200
001201 AGTCCACCAA ACTTCTCTTC CTTCTCGGAG GGTATGGGTA TTCTCGCTTC TATGCTGGCT CGTGGTTTTG TTAGTTTCAT 001280
001281 TGCTGCCTTA GTCATGTGGG GGAATTCCTG ACCAATTCAT CCTTCTTTTT AATCCCTCAA TCCTGAATTA GGTAACTTTT 001360
001361 CCTCTATCAC TTTCAACATT ACATTATCAG CTGCAATAGA AGACCCTACA CTTCTGACTT GTGGACTCCT GAGAGCAAGG 001440
001441 TCTGTGATTA TTCCACATGT GTATGGACAA CACCTCTGCA GAGGGCCTGG CAGCTGCTAG ATGCTCAATA AACCTCTGCC 001520
001521 GAAGGCAGCT GCTAAAAGAA AAAAGAAAAT CTTACTACGG AAAGTAAAAG ATGATCCTCA GGCAAGAAAC AAAAAAGTGC 001600
001601 GACGGAAGCT CTGTTTCTAT CTCTTCAGGG CCGTGCTTCA TTATTATTTC CTCATTCTCC AATTCCTCAC AAAGCTCTAT 001680
001681 TTTATAAATG TTTGCAGAGC TTTAAGTTAA TCCTAACATT TACTCTCCAG CCCTCAATCT TTAATGACTC CTTCTCTAAA 001760
001761 AAAAAAAAAG GCAGAAAAAG TAAAGATTTA TATAAGTTCA AAAGAAACTT AAAAATCCAG ACAAAGACTT ATCATCAGCC 001840
001841 ACGTATGGAA TGTGAGTGGA TTCTTGCCTA AAAAGCTAGC TCTAGCTGCA AATTTCCTAT ATTCTCCCAG TGCCACGGGA 001920
001921 CGGTGATGAG AGGTCTCCCA CTCCATGGGG CTCTGCCCAC CTCTGCTCAC CCACTCCACA CCTCCCACCA CACTTTTCTA 002000
002001 GTGCTTGAAG GAAGTGAAGA CAGTAGCCTT TAACATGTTC CATTACAGCA ACTGCTTTGG TGTAGTGACT TACAAGGAAG 002080
002081 CCTGCAAAGG AG
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Predicted Small Protein

Name NONHSAT106576_smProtein_692:841
Length 50
Molecular weight 5442.3577
Aromaticity 0.0612244897959
Instability index 49.0204081633
Isoelectric point 7.99896240234
Runs 7
Runs residual 0.019194704909
Runs probability 0.0482120776238
Amino acid sequence MVVLYSPRGISSPVPPLSSRLTLHNELALNWALCEPLHLTLSKISSLTW
Secondary structure LEEEELLLLLLLLLLLLLLLLLHHHHHHHHHHHLLLLLLLLLHHHHLLL
PRMN -
PiMo -