Difference between revisions of "ENST00000413708.1"
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sequence = <dnaseq>GCCTTGCAAATCATGAGGGAATCCCAGGGAAAGAAAACACTCCTCGGACTGATAGTGAGGTGATTGTCTCTACATACAGATGAGATACATGAGACACTGAGAAATGGATACCACTGAGGTCATGGCCAGGAGGTGGCAGTGCAAAGATTCCTACCCAAGCTTCCTCATCTGTGAACAGAACAGGAAGGCCTCGGTAAATAGGTACATGTTGACAAGCAACAACCTACTCAAAACTCATCTTTTTGTATTAATGCATCATGTGACTCCCTCGTTTGGACTTCTGCAGGAACATGTCAGAGACGGGGTCTTGCTATGTTGCCCAGAATGGAATGCAGTGTCTCTTCACCGGCACCATCCTGGCATGCTATAGCCTCAAACTCCTGGGCTCAAGCATCATCCTGCCTCAGCCTCCCAATTAGCTGGGACTACAGCTGAGTTTTCAGTGTGGACTTTGCTTCTGAATTGTGTCCAAGGCTCTGAGTCGGTTTTAAGACCTTACATCTGCATGGTGCTTTGCCGTTTAAGAAGGAATTCCACATTAATCTTCAGCTCTGATTATTCAAGTTCATCCCGGTTCCTGTTACAGTCACTGCTTGAATAAATGAATGAACCAAAA</dnaseq>| | sequence = <dnaseq>GCCTTGCAAATCATGAGGGAATCCCAGGGAAAGAAAACACTCCTCGGACTGATAGTGAGGTGATTGTCTCTACATACAGATGAGATACATGAGACACTGAGAAATGGATACCACTGAGGTCATGGCCAGGAGGTGGCAGTGCAAAGATTCCTACCCAAGCTTCCTCATCTGTGAACAGAACAGGAAGGCCTCGGTAAATAGGTACATGTTGACAAGCAACAACCTACTCAAAACTCATCTTTTTGTATTAATGCATCATGTGACTCCCTCGTTTGGACTTCTGCAGGAACATGTCAGAGACGGGGTCTTGCTATGTTGCCCAGAATGGAATGCAGTGTCTCTTCACCGGCACCATCCTGGCATGCTATAGCCTCAAACTCCTGGGCTCAAGCATCATCCTGCCTCAGCCTCCCAATTAGCTGGGACTACAGCTGAGTTTTCAGTGTGGACTTTGCTTCTGAATTGTGTCCAAGGCTCTGAGTCGGTTTTAAGACCTTACATCTGCATGGTGCTTTGCCGTTTAAGAAGGAATTCCACATTAATCTTCAGCTCTGATTATTCAAGTTCATCCCGGTTCCTGTTACAGTCACTGCTTGAATAAATGAATGAACCAAAA</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]][[Category:lnc-RGPD4-3]] | + | [[Category:Intergenic]][[Category:lnc-RGPD4-3]][[Category:NONHSAG028856]] |
Revision as of 10:20, 13 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
ENST00000413708.1 |
| Source |
Gencode19 |
| Same with |
lnc-RGPD4-3:3,NONHSAT073060 |
| Classification |
intergenic |
| Length |
616 nt |
| Genomic location |
chr2+:107978775..108023785 |
| Exon number |
4 |
| Exons |
107978775..107978834,107997495..107997731,108022443..108022576,108023601..108023785 |
| Genome context |
|
| Sequence |
000001 GCCTTGCAAA TCATGAGGGA ATCCCAGGGA AAGAAAACAC TCCTCGGACT GATAGTGAGG TGATTGTCTC TACATACAGA 000080
000081 TGAGATACAT GAGACACTGA GAAATGGATA CCACTGAGGT CATGGCCAGG AGGTGGCAGT GCAAAGATTC CTACCCAAGC 000160 000161 TTCCTCATCT GTGAACAGAA CAGGAAGGCC TCGGTAAATA GGTACATGTT GACAAGCAAC AACCTACTCA AAACTCATCT 000240 000241 TTTTGTATTA ATGCATCATG TGACTCCCTC GTTTGGACTT CTGCAGGAAC ATGTCAGAGA CGGGGTCTTG CTATGTTGCC 000320 000321 CAGAATGGAA TGCAGTGTCT CTTCACCGGC ACCATCCTGG CATGCTATAG CCTCAAACTC CTGGGCTCAA GCATCATCCT 000400 000401 GCCTCAGCCT CCCAATTAGC TGGGACTACA GCTGAGTTTT CAGTGTGGAC TTTGCTTCTG AATTGTGTCC AAGGCTCTGA 000480 000481 GTCGGTTTTA AGACCTTACA TCTGCATGGT GCTTTGCCGT TTAAGAAGGA ATTCCACATT AATCTTCAGC TCTGATTATT 000560 000561 CAAGTTCATC CCGGTTCCTG TTACAGTCAC TGCTTGAATA AATGAATGAA CCAAAA |
Predicted Small Protein
| Name | ENST00000413708.1_smProtein_290:418 |
| Length | 43 |
| Molecular weight | 4451.1895 |
| Aromaticity | 0.0714285714286 |
| Instability index | 62.4428571429 |
| Isoelectric point | 5.74542236328 |
| Runs | 8 |
| Runs residual | 0.0143158529234 |
| Runs probability | 0.0489754460344 |
| Amino acid sequence | MSETGSCYVAQNGMQCLFTGTILACYSLKLLGSSIILPQPPN |
| Secondary structure | LLLLLEEELLLLLEEEHHHHHHHHHHHHHHLLLLEEELLLLL |
| PRMN | - |
| PiMo | - |
