Difference between revisions of "ENST00000562613.1"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>GCTCGCCGCGCCCGCCGCCGCGATGTCCGGGGCCGGCCTAGCCGCGGTGGTGAGCTGCCTGCGCCCGCAGCCCGGCGAGGAGCCGCAGACCCATGAGGACCTTCTCCTGGCAGCTGCCTATGTTTTGGATGCCCAGTACAACAGAAATGTTCCATTTGAAACTCACCTCAGGCCATCAGACGTTACTATTTTTATAACCACTAGACAACGCAGGTTGCCGCATACTTCTTTATTTGTGTAGACCTCGCTCTTGCCCTGTTTGAAGAGTCTGAGTTGCTTCCCCTGCCTTTCTTGATATTTGGGTTCTTGGTCTGGACCATGGTAGCCGCCACCCACATAGTATACCCCTTGCTGCAAGGATGGGTGATGTATGTCTCACTCACCTCGTTTCTCATCTCCTTGATGTTCCTGTTGTCTTACTTGTTTGGATTTTACAAAAGATTTGAATCCTGGAGAGTTCTGGACAGCCTGTACCACGGGACCACTGGCATCCTGTACATGAGCGCTGCCGTCCTACAAGTACATGCCACGATTGTTTCTGAGAAACTGCTG</dnaseq>| | sequence = <dnaseq>GCTCGCCGCGCCCGCCGCCGCGATGTCCGGGGCCGGCCTAGCCGCGGTGGTGAGCTGCCTGCGCCCGCAGCCCGGCGAGGAGCCGCAGACCCATGAGGACCTTCTCCTGGCAGCTGCCTATGTTTTGGATGCCCAGTACAACAGAAATGTTCCATTTGAAACTCACCTCAGGCCATCAGACGTTACTATTTTTATAACCACTAGACAACGCAGGTTGCCGCATACTTCTTTATTTGTGTAGACCTCGCTCTTGCCCTGTTTGAAGAGTCTGAGTTGCTTCCCCTGCCTTTCTTGATATTTGGGTTCTTGGTCTGGACCATGGTAGCCGCCACCCACATAGTATACCCCTTGCTGCAAGGATGGGTGATGTATGTCTCACTCACCTCGTTTCTCATCTCCTTGATGTTCCTGTTGTCTTACTTGTTTGGATTTTACAAAAGATTTGAATCCTGGAGAGTTCTGGACAGCCTGTACCACGGGACCACTGGCATCCTGTACATGAGCGCTGCCGTCCTACAAGTACATGCCACGATTGTTTCTGAGAAACTGCTG</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:lnc-LIMS3-2]] |
Revision as of 10:23, 13 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000562613.1 |
Source |
Gencode19 |
Same with |
lnc-LIMS3-2:9,NONHSAT073185 |
Classification |
intergenic |
Length |
552 nt |
Genomic location |
chr2+:111003274..111041345 |
Exon number |
5 |
Exons |
111003274..111003370,111019009..111019090,111020228..111020342,111037183..111037350,111041256..111041345 |
Genome context |
|
Sequence |
000001 GCTCGCCGCG CCCGCCGCCG CGATGTCCGG GGCCGGCCTA GCCGCGGTGG TGAGCTGCCT GCGCCCGCAG CCCGGCGAGG 000080
000081 AGCCGCAGAC CCATGAGGAC CTTCTCCTGG CAGCTGCCTA TGTTTTGGAT GCCCAGTACA ACAGAAATGT TCCATTTGAA 000160 000161 ACTCACCTCA GGCCATCAGA CGTTACTATT TTTATAACCA CTAGACAACG CAGGTTGCCG CATACTTCTT TATTTGTGTA 000240 000241 GACCTCGCTC TTGCCCTGTT TGAAGAGTCT GAGTTGCTTC CCCTGCCTTT CTTGATATTT GGGTTCTTGG TCTGGACCAT 000320 000321 GGTAGCCGCC ACCCACATAG TATACCCCTT GCTGCAAGGA TGGGTGATGT ATGTCTCACT CACCTCGTTT CTCATCTCCT 000400 000401 TGATGTTCCT GTTGTCTTAC TTGTTTGGAT TTTACAAAAG ATTTGAATCC TGGAGAGTTC TGGACAGCCT GTACCACGGG 000480 000481 ACCACTGGCA TCCTGTACAT GAGCGCTGCC GTCCTACAAG TACATGCCAC GATTGTTTCT GAGAAACTGC TG |
Predicted Small Protein
Name | ENST00000562613.1_smProtein_92:196 |
Length | 35 |
Molecular weight | 4144.902 |
Aromaticity | 0.176470588235 |
Instability index | 40.7882352941 |
Isoelectric point | 8.53839111328 |
Runs | 8 |
Runs residual | 0.0491437081162 |
Runs probability | 0.0301956368132 |
Amino acid sequence | MRTFSWQLPMFWMPSTTEMFHLKLTSGHQTLLFL |
Secondary structure | LLEEELLLLLLLLLLLLHHHHHHHLLLLHHHEEL |
PRMN | - |
PiMo | - |