Difference between revisions of "NONHSAT034571"

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sequence = <dnaseq>CTTAAAAAATGCAAAGACAACACCAGGAAGTGGAATTTGAGACAAGTTGTTATATTGCCAGAGGGAGAGGGCTTCAGTGAATGGATCACATGCAACAATGTGGATTTTTCTACCAGAATATTAAAGAATTATCTCCTGGAGCAAGCCGTCCAGTCGTGTCTGCATATCCAAAATATAAATATTATTTGGCAGGTGATATTAACATTAAAAAGCTAATCAAATATACTCTTCTAAAATGCATGCGTTATTTTGATGACTTTGGTTCTAAATCAGCTTGATGATACTCATTTTCCTTCTAAGATTACTATCCCATTTCCCAAAATCTTTGTAACAAAGCCTATTTATTCTCAAGTGTTTGTTTAGGGTTTATACCTGTATTTATCAGCAGCACATTGATTCTGTGATGCAAAAGCAGAGGAAGCCTACTTCAACACTTTCTTAAGTACTTAATTTTCTTTGTTTAAGAGCTCAATCTGACTGATAAGGATGAGTTGACACCTCTTCAGGAATTAATTGAGAAGCTTGCAACAAAGAT</dnaseq>|
 
sequence = <dnaseq>CTTAAAAAATGCAAAGACAACACCAGGAAGTGGAATTTGAGACAAGTTGTTATATTGCCAGAGGGAGAGGGCTTCAGTGAATGGATCACATGCAACAATGTGGATTTTTCTACCAGAATATTAAAGAATTATCTCCTGGAGCAAGCCGTCCAGTCGTGTCTGCATATCCAAAATATAAATATTATTTGGCAGGTGATATTAACATTAAAAAGCTAATCAAATATACTCTTCTAAAATGCATGCGTTATTTTGATGACTTTGGTTCTAAATCAGCTTGATGATACTCATTTTCCTTCTAAGATTACTATCCCATTTCCCAAAATCTTTGTAACAAAGCCTATTTATTCTCAAGTGTTTGTTTAGGGTTTATACCTGTATTTATCAGCAGCACATTGATTCTGTGATGCAAAAGCAGAGGAAGCCTACTTCAACACTTTCTTAAGTACTTAATTTTCTTTGTTTAAGAGCTCAATCTGACTGATAAGGATGAGTTGACACCTCTTCAGGAATTAATTGAGAAGCTTGCAACAAAGAT</dnaseq>|
 
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[[Category:Intergenic]]
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[[Category:Intergenic]][[Category:NONHSAG013895]]

Revision as of 10:31, 13 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT034571

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

535 nt

Genomic location

chr13+:86543134..86543668

Exon number

1

Exons

86543134..86543668

Genome context

Sequence
000001 CTTAAAAAAT GCAAAGACAA CACCAGGAAG TGGAATTTGA GACAAGTTGT TATATTGCCA GAGGGAGAGG GCTTCAGTGA 000080
000081 ATGGATCACA TGCAACAATG TGGATTTTTC TACCAGAATA TTAAAGAATT ATCTCCTGGA GCAAGCCGTC CAGTCGTGTC 000160
000161 TGCATATCCA AAATATAAAT ATTATTTGGC AGGTGATATT AACATTAAAA AGCTAATCAA ATATACTCTT CTAAAATGCA 000240
000241 TGCGTTATTT TGATGACTTT GGTTCTAAAT CAGCTTGATG ATACTCATTT TCCTTCTAAG ATTACTATCC CATTTCCCAA 000320
000321 AATCTTTGTA ACAAAGCCTA TTTATTCTCA AGTGTTTGTT TAGGGTTTAT ACCTGTATTT ATCAGCAGCA CATTGATTCT 000400
000401 GTGATGCAAA AGCAGAGGAA GCCTACTTCA ACACTTTCTT AAGTACTTAA TTTTCTTTGT TTAAGAGCTC AATCTGACTG 000480
000481 ATAAGGATGA GTTGACACCT CTTCAGGAAT TAATTGAGAA GCTTGCAACA AAGAT
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Predicted Small Protein

Name NONHSAT034571_smProtein_80:277
Length 66
Molecular weight 7582.7754
Aromaticity 0.169230769231
Instability index 42.7616923077
Isoelectric point 9.32940673828
Runs 9
Runs residual 0.0118269230769
Runs probability 0.0445151033387
Amino acid sequence MDHMQQCGFFYQNIKELSPGASRPVVSAYPKYKYYLAGDINIKKLIKYTLLKCMRYFDDF
GSKSA
Secondary structure LLHHHHHHHHHHHHHHLLLLLLLLEEELLLLEEEEELLLLLHHHHHHHHHHHHHHHHHHL
LLLLL
PRMN -
PiMo -