Difference between revisions of "NONHSAT011009"
(Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
|||
| Line 42: | Line 42: | ||
sequence = <dnaseq>CGTGAGGGAAGTGGGGAGAAGCTGTCACCCCAACTTGAGTTCAAGAAGACTCCTTGGAAGAAAAGACCACCAAATTGAGAATGAAAAGTAAGCTGTAGCTATTCTTGGGATGGGGCAGTGGCCCCATGCTCTGGTCCCTGGCCTCAGCAGCTGTCCCAGCTCATAACCCCAAGTGCCGGCTTTCCCATCCCGTCTCAGGATCTGCACTCGACGGGCACCAGGGCTTTCTTCAGCGAATATCTAAACTCTCTCAAGTTTCTCCAGAGACTTTCATACATCTACAAAGATGACCTCATTCTGTAACAGCATGGATTTAACCCGCTCTTCAATGTCACTCCCCCACAGAATGCACTGTTCATCGTCACCCTATCCACTATCGTCAGTCTTACTAAAAGTCAAACATCAACATTAGTACTAACTCTGGCATTGTAGCGATATCTCCAAGAGAAAATTGTTTTGAACTTTTCTGGGAAAAGTTCACATACGTTTTCTTAAAACGCTAGTTTTTACAATCTCGCTACCATGTGGCTTTCCTGAAGGATTAAATTTCTAATGTCCTTCAACTAGAGAGAGGTAAAAATTTTTCTAGAACATGAATTGCCCACTCCCCTCATTCCTTCTCAGAAACTAACTGAATTCCAGTGGGTGTGCCTGGCAAACCCAAAAGCAGTTTCTGTTCAGGATGCTGGTCTTACCTGTGAAGGCGTTCATGAACGTGGAGAGGGACCGGTTCAACATTTTGAAGAAAGGGTCTCTGCACGGATATTTCTGAGACCCACAAAGGACGGTATGCTCAAGAATGTGAGGAACACCAGTACTGTCCATGGGAGTGGTACGGAACTGCACGCTAGGGAAGAGAGAGGAATGGCACGCTAGGGAAGGCGAATGACCAGAACGCAAAAGGTTCAGCTTAGTGCTGCGGACACAGTTCCCAGATGCATCATCACCTCAGGCTACTAGAAATCATCATTCTGACACCACAATCCTCCAGCACAGGGTTTTCCAACTATAATGTAAATCATTGACTCAGACTGTAAAATTGTATTTTGATGAGATTATAAGTCAGTGTAAACTTTTCCTTATTTTTCAAGATGCTCTGTCAATAAAAATACTAGTGAGATGATATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</dnaseq>| | sequence = <dnaseq>CGTGAGGGAAGTGGGGAGAAGCTGTCACCCCAACTTGAGTTCAAGAAGACTCCTTGGAAGAAAAGACCACCAAATTGAGAATGAAAAGTAAGCTGTAGCTATTCTTGGGATGGGGCAGTGGCCCCATGCTCTGGTCCCTGGCCTCAGCAGCTGTCCCAGCTCATAACCCCAAGTGCCGGCTTTCCCATCCCGTCTCAGGATCTGCACTCGACGGGCACCAGGGCTTTCTTCAGCGAATATCTAAACTCTCTCAAGTTTCTCCAGAGACTTTCATACATCTACAAAGATGACCTCATTCTGTAACAGCATGGATTTAACCCGCTCTTCAATGTCACTCCCCCACAGAATGCACTGTTCATCGTCACCCTATCCACTATCGTCAGTCTTACTAAAAGTCAAACATCAACATTAGTACTAACTCTGGCATTGTAGCGATATCTCCAAGAGAAAATTGTTTTGAACTTTTCTGGGAAAAGTTCACATACGTTTTCTTAAAACGCTAGTTTTTACAATCTCGCTACCATGTGGCTTTCCTGAAGGATTAAATTTCTAATGTCCTTCAACTAGAGAGAGGTAAAAATTTTTCTAGAACATGAATTGCCCACTCCCCTCATTCCTTCTCAGAAACTAACTGAATTCCAGTGGGTGTGCCTGGCAAACCCAAAAGCAGTTTCTGTTCAGGATGCTGGTCTTACCTGTGAAGGCGTTCATGAACGTGGAGAGGGACCGGTTCAACATTTTGAAGAAAGGGTCTCTGCACGGATATTTCTGAGACCCACAAAGGACGGTATGCTCAAGAATGTGAGGAACACCAGTACTGTCCATGGGAGTGGTACGGAACTGCACGCTAGGGAAGAGAGAGGAATGGCACGCTAGGGAAGGCGAATGACCAGAACGCAAAAGGTTCAGCTTAGTGCTGCGGACACAGTTCCCAGATGCATCATCACCTCAGGCTACTAGAAATCATCATTCTGACACCACAATCCTCCAGCACAGGGTTTTCCAACTATAATGTAAATCATTGACTCAGACTGTAAAATTGTATTTTGATGAGATTATAAGTCAGTGTAAACTTTTCCTTATTTTTCAAGATGCTCTGTCAATAAAAATACTAGTGAGATGATATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Antisense]] | + | [[Category:Antisense]][[Category:NONHSAG005019]] |
Revision as of 10:44, 13 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
| Transcript ID |
NONHSAT011009 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
antisense |
| Length |
1160 nt |
| Genomic location |
chr10+:3206390..3208828 |
| Exon number |
2 |
| Exons |
3206390..3206477,3207814..3208828 |
| Genome context |
|
| Sequence |
000001 CGTGAGGGAA GTGGGGAGAA GCTGTCACCC CAACTTGAGT TCAAGAAGAC TCCTTGGAAG AAAAGACCAC CAAATTGAGA 000080
000081 ATGAAAAGTA AGCTGTAGCT ATTCTTGGGA TGGGGCAGTG GCCCCATGCT CTGGTCCCTG GCCTCAGCAG CTGTCCCAGC 000160 000161 TCATAACCCC AAGTGCCGGC TTTCCCATCC CGTCTCAGGA TCTGCACTCG ACGGGCACCA GGGCTTTCTT CAGCGAATAT 000240 000241 CTAAACTCTC TCAAGTTTCT CCAGAGACTT TCATACATCT ACAAAGATGA CCTCATTCTG TAACAGCATG GATTTAACCC 000320 000321 GCTCTTCAAT GTCACTCCCC CACAGAATGC ACTGTTCATC GTCACCCTAT CCACTATCGT CAGTCTTACT AAAAGTCAAA 000400 000401 CATCAACATT AGTACTAACT CTGGCATTGT AGCGATATCT CCAAGAGAAA ATTGTTTTGA ACTTTTCTGG GAAAAGTTCA 000480 000481 CATACGTTTT CTTAAAACGC TAGTTTTTAC AATCTCGCTA CCATGTGGCT TTCCTGAAGG ATTAAATTTC TAATGTCCTT 000560 000561 CAACTAGAGA GAGGTAAAAA TTTTTCTAGA ACATGAATTG CCCACTCCCC TCATTCCTTC TCAGAAACTA ACTGAATTCC 000640 000641 AGTGGGTGTG CCTGGCAAAC CCAAAAGCAG TTTCTGTTCA GGATGCTGGT CTTACCTGTG AAGGCGTTCA TGAACGTGGA 000720 000721 GAGGGACCGG TTCAACATTT TGAAGAAAGG GTCTCTGCAC GGATATTTCT GAGACCCACA AAGGACGGTA TGCTCAAGAA 000800 000801 TGTGAGGAAC ACCAGTACTG TCCATGGGAG TGGTACGGAA CTGCACGCTA GGGAAGAGAG AGGAATGGCA CGCTAGGGAA 000880 000881 GGCGAATGAC CAGAACGCAA AAGGTTCAGC TTAGTGCTGC GGACACAGTT CCCAGATGCA TCATCACCTC AGGCTACTAG 000960 000961 AAATCATCAT TCTGACACCA CAATCCTCCA GCACAGGGTT TTCCAACTAT AATGTAAATC ATTGACTCAG ACTGTAAAAT 001040 001041 TGTATTTTGA TGAGATTATA AGTCAGTGTA AACTTTTCCT TATTTTTCAA GATGCTCTGT CAATAAAAAT ACTAGTGAGA 001120 001121 TGATATTTAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA |
Predicted Small Protein
| Name | NONHSAT011009_smProtein_125:289 |
| Length | 55 |
| Molecular weight | 5905.7293 |
| Aromaticity | 0.0555555555556 |
| Instability index | 55.2444444444 |
| Isoelectric point | 10.0444946289 |
| Runs | 8 |
| Runs residual | 0.0145438121048 |
| Runs probability | 0.0354398516163 |
| Amino acid sequence | MLWSLASAAVPAHNPKCRLSHPVSGSALDGHQGFLQRISKLSQVSPETFIHLQR |
| Secondary structure | LHHHHHHHLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHLLLLHHHHEEELL |
| PRMN | - |
| PiMo | - |
