Difference between revisions of "NONHSAT107727"

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sequence = <dnaseq>AGGGTGTGTGCCGCGCGCGGGAAACGCCGTTCTCCGCTCCAGGCGTCGGCGGGCGGTGGCGAGAGCAGATTTTATAGGTTCAGAAAGTGTGTCTCAGAGGAGTTAGAGAAGACCGATTAATAGATGACAGTGCTAAAGCCTGGATCTCCTGAATCCTGGATGAAAGTGTCCTAAGTTAGATTCCTGGGAAGAAAATTCTGAGACACATTCTGCAGGATGATTATTAGGGCTCATCCTTGGTTTCAACACCCATAGAAGGAAGGGGGAAGAAGAAATCGAACAGAGAGACAGAAGTCGAGATGCATTTCAGGCCAGGACTCTTGGCTGAACCCACAGGAGCTCTGGAGCTAGAATGGCCCTTCAGAGTTGTCCTGAGTTGGTCTGAGATGGCCAGTTCTTTATATTCCTGCATGGGATAGTCACTGGATGTCCACCCCAGGAAGGGGTGTGGCCAAGACAGTCCCTAAAATGCCCGCCAGCACTCCCTACACCTGGAGCGACAAGACCAACATCACAGGGGGAATGCACTGGGTGATGGATCACAGCGTTCATCCCAGAAGATGAGGATACAGAATTGGCTGACAACTACGTTCTAAATGTCAGTGTTCTCCAAAATTCATATGTTGAAACTTAATTCCCAATGTGATGGCATTAGGAAGTGGGGCCTTTGGGGGAGGGACTATAGGTCATGAGGGTGTAACCCTCATCAATGGGATTAGTGTCCAGAGAGCTGCCTTGCCCTTCCACCATGTGAGGACATAGTGAGAAGGTGCCATCTATGAACTAGGAAGTGGGCGCTTACCACCAGACACCCACTCTTCTGGCAACTTGATCTTGAATTTCCCAGCCTCCAGAACTCTGAGAAATCAATTTCTGTTAATTATAAGCTACCCAGTCGATAGCATTTTGTTAAAGCTGCTGGAACTAAACTAAGACACTGACGCTTTCTGCGACAAAAAGATAGAGTGAGTCTCTATAGCATACCATGTAACAGATGTTTTTGGAAAAATAACCTCATTTCATATGTTTCCTCAAGATAAAAAGAATGTCATAACAACAAATGAGAAAATAGTTGCTTTAGAAATATTGCACCCTATGGAGAGAGTATTTTGGATTTTGGTTTTTTGTTTTGTTTTTTAACTTTTGTTTTAGGTTTGGGGGTACATATGCAGGTTTGTTATATAGGTAAACTCATGTCACAGGGGTTTGTTGTACAGATAATTTCCTCACCCAGGTACTAAGCCTAGTACCCAATAGTTGCTTTTTCTCCTCCTCTCTCTCCTCCCACCCTCCACCCTCAAATAGGCCCCAGTGTATGTTGTTCTCTTCATTATGTTCATGAAGTTGAGAGAGTGTTTTGAAAAAGAATGTTGGAAAGCATTTCCACTGTTAGATGATTTTAAGTCAAAAAGTTATACAACAGTGTGACCTATTTGCACACAAGCATGGACACAGAATTGTGTCATATGTTTAAAACTTTTCTAGATCCTTTTGTGGTTCATAAGCTTGATGATTGAGTTTTCGCGTCCACATGTGAGATGTGCCTCCCTTGAGCCTTGTCATTGGCACATTACCTGCCTGATGTGAACAATAAAAATAAAAAATAAAAATTTGC</dnaseq>|
 
sequence = <dnaseq>AGGGTGTGTGCCGCGCGCGGGAAACGCCGTTCTCCGCTCCAGGCGTCGGCGGGCGGTGGCGAGAGCAGATTTTATAGGTTCAGAAAGTGTGTCTCAGAGGAGTTAGAGAAGACCGATTAATAGATGACAGTGCTAAAGCCTGGATCTCCTGAATCCTGGATGAAAGTGTCCTAAGTTAGATTCCTGGGAAGAAAATTCTGAGACACATTCTGCAGGATGATTATTAGGGCTCATCCTTGGTTTCAACACCCATAGAAGGAAGGGGGAAGAAGAAATCGAACAGAGAGACAGAAGTCGAGATGCATTTCAGGCCAGGACTCTTGGCTGAACCCACAGGAGCTCTGGAGCTAGAATGGCCCTTCAGAGTTGTCCTGAGTTGGTCTGAGATGGCCAGTTCTTTATATTCCTGCATGGGATAGTCACTGGATGTCCACCCCAGGAAGGGGTGTGGCCAAGACAGTCCCTAAAATGCCCGCCAGCACTCCCTACACCTGGAGCGACAAGACCAACATCACAGGGGGAATGCACTGGGTGATGGATCACAGCGTTCATCCCAGAAGATGAGGATACAGAATTGGCTGACAACTACGTTCTAAATGTCAGTGTTCTCCAAAATTCATATGTTGAAACTTAATTCCCAATGTGATGGCATTAGGAAGTGGGGCCTTTGGGGGAGGGACTATAGGTCATGAGGGTGTAACCCTCATCAATGGGATTAGTGTCCAGAGAGCTGCCTTGCCCTTCCACCATGTGAGGACATAGTGAGAAGGTGCCATCTATGAACTAGGAAGTGGGCGCTTACCACCAGACACCCACTCTTCTGGCAACTTGATCTTGAATTTCCCAGCCTCCAGAACTCTGAGAAATCAATTTCTGTTAATTATAAGCTACCCAGTCGATAGCATTTTGTTAAAGCTGCTGGAACTAAACTAAGACACTGACGCTTTCTGCGACAAAAAGATAGAGTGAGTCTCTATAGCATACCATGTAACAGATGTTTTTGGAAAAATAACCTCATTTCATATGTTTCCTCAAGATAAAAAGAATGTCATAACAACAAATGAGAAAATAGTTGCTTTAGAAATATTGCACCCTATGGAGAGAGTATTTTGGATTTTGGTTTTTTGTTTTGTTTTTTAACTTTTGTTTTAGGTTTGGGGGTACATATGCAGGTTTGTTATATAGGTAAACTCATGTCACAGGGGTTTGTTGTACAGATAATTTCCTCACCCAGGTACTAAGCCTAGTACCCAATAGTTGCTTTTTCTCCTCCTCTCTCTCCTCCCACCCTCCACCCTCAAATAGGCCCCAGTGTATGTTGTTCTCTTCATTATGTTCATGAAGTTGAGAGAGTGTTTTGAAAAAGAATGTTGGAAAGCATTTCCACTGTTAGATGATTTTAAGTCAAAAAGTTATACAACAGTGTGACCTATTTGCACACAAGCATGGACACAGAATTGTGTCATATGTTTAAAACTTTTCTAGATCCTTTTGTGGTTCATAAGCTTGATGATTGAGTTTTCGCGTCCACATGTGAGATGTGCCTCCCTTGAGCCTTGTCATTGGCACATTACCTGCCTGATGTGAACAATAAAAATAAAAAATAAAAATTTGC</dnaseq>|
 
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[[Category:Intergenic]]
+
[[Category:Intergenic]][[Category:NONHSAG043010]]

Revision as of 10:45, 13 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT107727

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1615 nt

Genomic location

chr6+:11043991..11079377

Exon number

3

Exons

11043991..11044058,11048142..11048232,11077922..11079377

Genome context

Sequence
000001 AGGGTGTGTG CCGCGCGCGG GAAACGCCGT TCTCCGCTCC AGGCGTCGGC GGGCGGTGGC GAGAGCAGAT TTTATAGGTT 000080
000081 CAGAAAGTGT GTCTCAGAGG AGTTAGAGAA GACCGATTAA TAGATGACAG TGCTAAAGCC TGGATCTCCT GAATCCTGGA 000160
000161 TGAAAGTGTC CTAAGTTAGA TTCCTGGGAA GAAAATTCTG AGACACATTC TGCAGGATGA TTATTAGGGC TCATCCTTGG 000240
000241 TTTCAACACC CATAGAAGGA AGGGGGAAGA AGAAATCGAA CAGAGAGACA GAAGTCGAGA TGCATTTCAG GCCAGGACTC 000320
000321 TTGGCTGAAC CCACAGGAGC TCTGGAGCTA GAATGGCCCT TCAGAGTTGT CCTGAGTTGG TCTGAGATGG CCAGTTCTTT 000400
000401 ATATTCCTGC ATGGGATAGT CACTGGATGT CCACCCCAGG AAGGGGTGTG GCCAAGACAG TCCCTAAAAT GCCCGCCAGC 000480
000481 ACTCCCTACA CCTGGAGCGA CAAGACCAAC ATCACAGGGG GAATGCACTG GGTGATGGAT CACAGCGTTC ATCCCAGAAG 000560
000561 ATGAGGATAC AGAATTGGCT GACAACTACG TTCTAAATGT CAGTGTTCTC CAAAATTCAT ATGTTGAAAC TTAATTCCCA 000640
000641 ATGTGATGGC ATTAGGAAGT GGGGCCTTTG GGGGAGGGAC TATAGGTCAT GAGGGTGTAA CCCTCATCAA TGGGATTAGT 000720
000721 GTCCAGAGAG CTGCCTTGCC CTTCCACCAT GTGAGGACAT AGTGAGAAGG TGCCATCTAT GAACTAGGAA GTGGGCGCTT 000800
000801 ACCACCAGAC ACCCACTCTT CTGGCAACTT GATCTTGAAT TTCCCAGCCT CCAGAACTCT GAGAAATCAA TTTCTGTTAA 000880
000881 TTATAAGCTA CCCAGTCGAT AGCATTTTGT TAAAGCTGCT GGAACTAAAC TAAGACACTG ACGCTTTCTG CGACAAAAAG 000960
000961 ATAGAGTGAG TCTCTATAGC ATACCATGTA ACAGATGTTT TTGGAAAAAT AACCTCATTT CATATGTTTC CTCAAGATAA 001040
001041 AAAGAATGTC ATAACAACAA ATGAGAAAAT AGTTGCTTTA GAAATATTGC ACCCTATGGA GAGAGTATTT TGGATTTTGG 001120
001121 TTTTTTGTTT TGTTTTTTAA CTTTTGTTTT AGGTTTGGGG GTACATATGC AGGTTTGTTA TATAGGTAAA CTCATGTCAC 001200
001201 AGGGGTTTGT TGTACAGATA ATTTCCTCAC CCAGGTACTA AGCCTAGTAC CCAATAGTTG CTTTTTCTCC TCCTCTCTCT 001280
001281 CCTCCCACCC TCCACCCTCA AATAGGCCCC AGTGTATGTT GTTCTCTTCA TTATGTTCAT GAAGTTGAGA GAGTGTTTTG 001360
001361 AAAAAGAATG TTGGAAAGCA TTTCCACTGT TAGATGATTT TAAGTCAAAA AGTTATACAA CAGTGTGACC TATTTGCACA 001440
001441 CAAGCATGGA CACAGAATTG TGTCATATGT TTAAAACTTT TCTAGATCCT TTTGTGGTTC ATAAGCTTGA TGATTGAGTT 001520
001521 TTCGCGTCCA CATGTGAGAT GTGCCTCCCT TGAGCCTTGT CATTGGCACA TTACCTGCCT GATGTGAACA ATAAAAATAA 001600
001601 AAAATAAAAA TTTGC
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Predicted Small Protein

Name NONHSAT107727_smProtein_299:418
Length 40
Molecular weight 4400.0847
Aromaticity 0.128205128205
Instability index 58.1384615385
Isoelectric point 4.90264892578
Runs 7
Runs residual 0.0107466063348
Runs probability 0.028982764277
Amino acid sequence MHFRPGLLAEPTGALELEWPFRVVLSWSEMASSLYSCMG
Secondary structure LLLLLLLLLLLLLLEEELLLEEEEELHHHHHHHHHHLLL
PRMN -
PiMo -