Difference between revisions of "ENST00000456446.1"
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sequence = <dnaseq>GTCAGTTAAAATTTCACCATTTTGCCTCTTAGTGCACATGCTTTAACTCATTCCCCAACTCCTGAGATCTTATGGGGAAGCTGCTGATCATTACTTTCAGTTGTTTCTATCTACTGGGAGACAGCCTCTTCCTGGCACCAGCTATGACCAATTATTATTATAGGGAGACAGCTTAACAACTGCCTGGCCATCACTGGATGGTTGCCTCACATTCGTGAAGGGGTGTCTCTCTTGCCCGGCTCGTGTCCGACTAACTACTGACTGTAACAAAGAGACTATTTAAAAGTGTTTGAGAGCCATGGGGCTTGGAATCTATTTAGATCAATACACAAGGCAGAAAGGACAAGACCCAGTTGCTGAACTGAAACAACTGATTCCATTGGTAGTCTCTCTATCAGCACCAAACCTGGAAATGCCACTCCTCAAGAAAAAGACCACCAATCCAAGCACCTTTCTAAAATCACTTAGTGGAGGCCTGAATCTTGTAAGAAAACTAACTTAGAGTTTCTGCATTTACAAATAAAATTTCTTTT</dnaseq>| | sequence = <dnaseq>GTCAGTTAAAATTTCACCATTTTGCCTCTTAGTGCACATGCTTTAACTCATTCCCCAACTCCTGAGATCTTATGGGGAAGCTGCTGATCATTACTTTCAGTTGTTTCTATCTACTGGGAGACAGCCTCTTCCTGGCACCAGCTATGACCAATTATTATTATAGGGAGACAGCTTAACAACTGCCTGGCCATCACTGGATGGTTGCCTCACATTCGTGAAGGGGTGTCTCTCTTGCCCGGCTCGTGTCCGACTAACTACTGACTGTAACAAAGAGACTATTTAAAAGTGTTTGAGAGCCATGGGGCTTGGAATCTATTTAGATCAATACACAAGGCAGAAAGGACAAGACCCAGTTGCTGAACTGAAACAACTGATTCCATTGGTAGTCTCTCTATCAGCACCAAACCTGGAAATGCCACTCCTCAAGAAAAAGACCACCAATCCAAGCACCTTTCTAAAATCACTTAGTGGAGGCCTGAATCTTGTAAGAAAACTAACTTAGAGTTTCTGCATTTACAAATAAAATTTCTTTT</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]][[Category:lnc-CERKL-1]] | + | [[Category:Intergenic]][[Category:lnc-CERKL-1]][[Category:NONHSAG029995]] |
Revision as of 10:58, 13 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
ENST00000456446.1 |
| Source |
Gencode19 |
| Same with |
lnc-CERKL-1:1,NONHSAT075870 |
| Classification |
intergenic |
| Length |
533 nt |
| Genomic location |
chr2-:182286881..182290476 |
| Exon number |
2 |
| Exons |
182286881..182287119,182290183..182290476 |
| Genome context |
|
| Sequence |
000001 GTCAGTTAAA ATTTCACCAT TTTGCCTCTT AGTGCACATG CTTTAACTCA TTCCCCAACT CCTGAGATCT TATGGGGAAG 000080
000081 CTGCTGATCA TTACTTTCAG TTGTTTCTAT CTACTGGGAG ACAGCCTCTT CCTGGCACCA GCTATGACCA ATTATTATTA 000160 000161 TAGGGAGACA GCTTAACAAC TGCCTGGCCA TCACTGGATG GTTGCCTCAC ATTCGTGAAG GGGTGTCTCT CTTGCCCGGC 000240 000241 TCGTGTCCGA CTAACTACTG ACTGTAACAA AGAGACTATT TAAAAGTGTT TGAGAGCCAT GGGGCTTGGA ATCTATTTAG 000320 000321 ATCAATACAC AAGGCAGAAA GGACAAGACC CAGTTGCTGA ACTGAAACAA CTGATTCCAT TGGTAGTCTC TCTATCAGCA 000400 000401 CCAAACCTGG AAATGCCACT CCTCAAGAAA AAGACCACCA ATCCAAGCAC CTTTCTAAAA TCACTTAGTG GAGGCCTGAA 000480 000481 TCTTGTAAGA AAACTAACTT AGAGTTTCTG CATTTACAAA TAAAATTTCT TTT |
Predicted Small Protein
| Name | ENST00000456446.1_smProtein_71:175 |
| Length | 35 |
| Molecular weight | 3927.605 |
| Aromaticity | 0.205882352941 |
| Instability index | 41.5297058824 |
| Isoelectric point | 5.82000732422 |
| Runs | 7 |
| Runs residual | 0.0197319434103 |
| Runs probability | 0.0437328084388 |
| Amino acid sequence | MGKLLIITFSCFYLLGDSLFLAPAMTNYYYRETA |
| Secondary structure | LLLEEEEELLHHHHHLLLHHHHHHHHHHHHHLLL |
| PRMN | LLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLL |
| PiMo | iiiiTTTTTTTTTTTTTTTTTToooooooooooo |
