Difference between revisions of "NONHSAT012612"

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(Created page with "Please input one-sentence summary here. ==Annotated Information== ===Transcriptomic Nomeclature=== Please input transcriptomic nomeclature information here. ===Functio...")
 
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sequence = <dnaseq>CCTCCTTAGTAGAGCGGAATGAGTAATACCCACACGGTGCTTGTCTCACTTCCCCATCCGCACCCGGCCCTCACCTGCTGTCACCTCGGCCTCCCACACCCGGTCCGCGCTCCCCGCCCTCTTCCTCGCGTAGAACCGTGGGATCCTAGGTGGCAGGACTCAGGTATCCACAGGCCATGAATTCCTTCCTAAATGAGCGGTCATCGCCGTGCAGGACCTTAAGGCAAGAAGCATCGGCTGACAGATGTGATCTCTGAACCTGATAGATTGCTGATTTTATCTTATTTTATCCTTGACTTGGTACAAGTTTTGGGATTTCTGAAAAGACCATACAGATAACCACAAATATCAAGAAAGTCGTCTTCAGTATTAAGTAGAATTTAGATTTAGGTTTCCTTCCTGCTTCCCACCTCCTTCGAATAAGGAAACGTCTTTGGGACCAACTTTATGGAATAAATAAGCTGAGCTGTATTTCAAGTAATATAGTTATAAATTAACAATGTAGCAGTTATTGATAGAGAAATTGAGAAAACTGAAACGTGACCGGAGTATTGGAAATAACGTAGTACATCACCTAGCACAATGACACATAGTAGGTGCTCAATAAATTTATGCTTATAATTTTTGTCACTTCTATGGCAGGATTTTTTTATTAGGTTAAAATTATCTTTTAAACACCTTCCGGAATTTTAGAATATTCATTAATAATGTCTTCAAACCTTTCAACTGAAATAAATTTACAGCTGAAGTCTGATGATTTAAAGTTAGAAAGTTTAATCTTGAATATAAATGAACATTTTCTCTCCCACATTTTCTTGGGCATTTTGAGAAGTAAATGCGTTATTTATTGGTCCATGAAATGTGACTGTAAATATTCTTTGCTATACATTATGTCTATATATCTGCATTCATCCTCAATGCCAAAACTAGAATCATTAGTCTTAATGATCATTTTAAGTACAGGCAGTCCTCGCTTTCCTTGATACCATGTTAACCGAAACTTGTGTATGTCAACACGGTGTCCTTGCTTTGCTTGGTTAAGTGTGAGTTCTTCCTCCCTTTTTTTAAGAGTTGTACAATGTTTTTCAGTCGCCTACCGAATCAGGTCATAGACTATGGAATTGACCCCACCCCACCAACATTTTTACAGCTACCCTGATTTCTGACCAGAAAGGAAAAAAAAACTTTCCAGCTCTATCACACATTTTACCTACTCTTAAACTTAGGAGGTATTACAAATAGCATTTTCTCATGTTCTCTTTCTGGCCTGTACCTCCCTGCTAAGCTTCCTTCAGTGTTCATCCTCACCTCATAGAGAGATGAAGTGAAGAGACAAACAGAAGTCATTTTCTTCCTTACTTTAGTGGTTCAACACCTAGTGGAGTACGTAGCCAATAGTAGATGCTTAATAAACATTTCTTAAATTAATATTGTTGACCTTTTCTGACCCTGTTCTTGACAGTAAGGTACATAATCTGCCTTCATCCCTTTAGTCCTTAGGAACAGATAAAGTCATGGATATGAAAGTGATCACTGTCATTAATATCCACATTAAAATTGCTCTTGATTTTAGTTTCTCCATAATCATTTTCCCTAAACAATGAACTCTGTTCACCTTTTTTTTTAAAATATGCACAGTGAATATTACTGGTAGCCCAAATCTTCTAACATAAAATTTCCATTTTGTAAAAGCTTCTGATAAGCATATATGTTATGAATTGAATGTTTGATTATTATACTTTAATATTCTTGAAAATATTGATACCTGGACTGGAAAGAAAACAGACAAAAGTAAATCTCAGAATAAATTACTGCTTTAAACATG</dnaseq>|
 
sequence = <dnaseq>CCTCCTTAGTAGAGCGGAATGAGTAATACCCACACGGTGCTTGTCTCACTTCCCCATCCGCACCCGGCCCTCACCTGCTGTCACCTCGGCCTCCCACACCCGGTCCGCGCTCCCCGCCCTCTTCCTCGCGTAGAACCGTGGGATCCTAGGTGGCAGGACTCAGGTATCCACAGGCCATGAATTCCTTCCTAAATGAGCGGTCATCGCCGTGCAGGACCTTAAGGCAAGAAGCATCGGCTGACAGATGTGATCTCTGAACCTGATAGATTGCTGATTTTATCTTATTTTATCCTTGACTTGGTACAAGTTTTGGGATTTCTGAAAAGACCATACAGATAACCACAAATATCAAGAAAGTCGTCTTCAGTATTAAGTAGAATTTAGATTTAGGTTTCCTTCCTGCTTCCCACCTCCTTCGAATAAGGAAACGTCTTTGGGACCAACTTTATGGAATAAATAAGCTGAGCTGTATTTCAAGTAATATAGTTATAAATTAACAATGTAGCAGTTATTGATAGAGAAATTGAGAAAACTGAAACGTGACCGGAGTATTGGAAATAACGTAGTACATCACCTAGCACAATGACACATAGTAGGTGCTCAATAAATTTATGCTTATAATTTTTGTCACTTCTATGGCAGGATTTTTTTATTAGGTTAAAATTATCTTTTAAACACCTTCCGGAATTTTAGAATATTCATTAATAATGTCTTCAAACCTTTCAACTGAAATAAATTTACAGCTGAAGTCTGATGATTTAAAGTTAGAAAGTTTAATCTTGAATATAAATGAACATTTTCTCTCCCACATTTTCTTGGGCATTTTGAGAAGTAAATGCGTTATTTATTGGTCCATGAAATGTGACTGTAAATATTCTTTGCTATACATTATGTCTATATATCTGCATTCATCCTCAATGCCAAAACTAGAATCATTAGTCTTAATGATCATTTTAAGTACAGGCAGTCCTCGCTTTCCTTGATACCATGTTAACCGAAACTTGTGTATGTCAACACGGTGTCCTTGCTTTGCTTGGTTAAGTGTGAGTTCTTCCTCCCTTTTTTTAAGAGTTGTACAATGTTTTTCAGTCGCCTACCGAATCAGGTCATAGACTATGGAATTGACCCCACCCCACCAACATTTTTACAGCTACCCTGATTTCTGACCAGAAAGGAAAAAAAAACTTTCCAGCTCTATCACACATTTTACCTACTCTTAAACTTAGGAGGTATTACAAATAGCATTTTCTCATGTTCTCTTTCTGGCCTGTACCTCCCTGCTAAGCTTCCTTCAGTGTTCATCCTCACCTCATAGAGAGATGAAGTGAAGAGACAAACAGAAGTCATTTTCTTCCTTACTTTAGTGGTTCAACACCTAGTGGAGTACGTAGCCAATAGTAGATGCTTAATAAACATTTCTTAAATTAATATTGTTGACCTTTTCTGACCCTGTTCTTGACAGTAAGGTACATAATCTGCCTTCATCCCTTTAGTCCTTAGGAACAGATAAAGTCATGGATATGAAAGTGATCACTGTCATTAATATCCACATTAAAATTGCTCTTGATTTTAGTTTCTCCATAATCATTTTCCCTAAACAATGAACTCTGTTCACCTTTTTTTTTAAAATATGCACAGTGAATATTACTGGTAGCCCAAATCTTCTAACATAAAATTTCCATTTTGTAAAAGCTTCTGATAAGCATATATGTTATGAATTGAATGTTTGATTATTATACTTTAATATTCTTGAAAATATTGATACCTGGACTGGAAAGAAAACAGACAAAAGTAAATCTCAGAATAAATTACTGCTTTAAACATG</dnaseq>|
 
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[[Category:Intergenic]]
+
[[Category:Intergenic]][[Category:NONHSAG005548]]

Revision as of 11:11, 13 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT012612

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1825 nt

Genomic location

chr10-:31605458..31607365

Exon number

3

Exons

31605458..31605914,31605991..31607195,31607203..31607365

Genome context

Sequence
000001 CCTCCTTAGT AGAGCGGAAT GAGTAATACC CACACGGTGC TTGTCTCACT TCCCCATCCG CACCCGGCCC TCACCTGCTG 000080
000081 TCACCTCGGC CTCCCACACC CGGTCCGCGC TCCCCGCCCT CTTCCTCGCG TAGAACCGTG GGATCCTAGG TGGCAGGACT 000160
000161 CAGGTATCCA CAGGCCATGA ATTCCTTCCT AAATGAGCGG TCATCGCCGT GCAGGACCTT AAGGCAAGAA GCATCGGCTG 000240
000241 ACAGATGTGA TCTCTGAACC TGATAGATTG CTGATTTTAT CTTATTTTAT CCTTGACTTG GTACAAGTTT TGGGATTTCT 000320
000321 GAAAAGACCA TACAGATAAC CACAAATATC AAGAAAGTCG TCTTCAGTAT TAAGTAGAAT TTAGATTTAG GTTTCCTTCC 000400
000401 TGCTTCCCAC CTCCTTCGAA TAAGGAAACG TCTTTGGGAC CAACTTTATG GAATAAATAA GCTGAGCTGT ATTTCAAGTA 000480
000481 ATATAGTTAT AAATTAACAA TGTAGCAGTT ATTGATAGAG AAATTGAGAA AACTGAAACG TGACCGGAGT ATTGGAAATA 000560
000561 ACGTAGTACA TCACCTAGCA CAATGACACA TAGTAGGTGC TCAATAAATT TATGCTTATA ATTTTTGTCA CTTCTATGGC 000640
000641 AGGATTTTTT TATTAGGTTA AAATTATCTT TTAAACACCT TCCGGAATTT TAGAATATTC ATTAATAATG TCTTCAAACC 000720
000721 TTTCAACTGA AATAAATTTA CAGCTGAAGT CTGATGATTT AAAGTTAGAA AGTTTAATCT TGAATATAAA TGAACATTTT 000800
000801 CTCTCCCACA TTTTCTTGGG CATTTTGAGA AGTAAATGCG TTATTTATTG GTCCATGAAA TGTGACTGTA AATATTCTTT 000880
000881 GCTATACATT ATGTCTATAT ATCTGCATTC ATCCTCAATG CCAAAACTAG AATCATTAGT CTTAATGATC ATTTTAAGTA 000960
000961 CAGGCAGTCC TCGCTTTCCT TGATACCATG TTAACCGAAA CTTGTGTATG TCAACACGGT GTCCTTGCTT TGCTTGGTTA 001040
001041 AGTGTGAGTT CTTCCTCCCT TTTTTTAAGA GTTGTACAAT GTTTTTCAGT CGCCTACCGA ATCAGGTCAT AGACTATGGA 001120
001121 ATTGACCCCA CCCCACCAAC ATTTTTACAG CTACCCTGAT TTCTGACCAG AAAGGAAAAA AAAACTTTCC AGCTCTATCA 001200
001201 CACATTTTAC CTACTCTTAA ACTTAGGAGG TATTACAAAT AGCATTTTCT CATGTTCTCT TTCTGGCCTG TACCTCCCTG 001280
001281 CTAAGCTTCC TTCAGTGTTC ATCCTCACCT CATAGAGAGA TGAAGTGAAG AGACAAACAG AAGTCATTTT CTTCCTTACT 001360
001361 TTAGTGGTTC AACACCTAGT GGAGTACGTA GCCAATAGTA GATGCTTAAT AAACATTTCT TAAATTAATA TTGTTGACCT 001440
001441 TTTCTGACCC TGTTCTTGAC AGTAAGGTAC ATAATCTGCC TTCATCCCTT TAGTCCTTAG GAACAGATAA AGTCATGGAT 001520
001521 ATGAAAGTGA TCACTGTCAT TAATATCCAC ATTAAAATTG CTCTTGATTT TAGTTTCTCC ATAATCATTT TCCCTAAACA 001600
001601 ATGAACTCTG TTCACCTTTT TTTTTAAAAT ATGCACAGTG AATATTACTG GTAGCCCAAA TCTTCTAACA TAAAATTTCC 001680
001681 ATTTTGTAAA AGCTTCTGAT AAGCATATAT GTTATGAATT GAATGTTTGA TTATTATACT TTAATATTCT TGAAAATATT 001760
001761 GATACCTGGA CTGGAAAGAA AACAGACAAA AGTAAATCTC AGAATAAATT ACTGCTTTAA ACATG
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Predicted Small Protein

Name NONHSAT012612_smProtein_707:982
Length 92
Molecular weight 10457.339
Aromaticity 0.0879120879121
Instability index 64.4241758242
Isoelectric point 7.73651123047
Runs 11
Runs residual 0.0125915750916
Runs probability 0.0807920219685
Amino acid sequence MSSNLSTEINLQLKSDDLKLESLILNINEHFLSHIFLGILRSKCVIYWSMKCDCKYSLLY
IMSIYLHSSSMPKLESLVLMIILSTGSPRFP
Secondary structure LLLLLLHHHHHHLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHLEEEEEEEELLLLLHHHH
HHHHHHLLLLLHHHHHHHHHHHHHLLLLLLL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLHHHHHHHH
HHHHHHHHHHLLLLLLLLLLLLLLLLLLLLL
PiMo ooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiTTTTTTTT
TTTTTTTTTTooooooooooooooooooooo