Difference between revisions of "NONHSAT012612"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>CCTCCTTAGTAGAGCGGAATGAGTAATACCCACACGGTGCTTGTCTCACTTCCCCATCCGCACCCGGCCCTCACCTGCTGTCACCTCGGCCTCCCACACCCGGTCCGCGCTCCCCGCCCTCTTCCTCGCGTAGAACCGTGGGATCCTAGGTGGCAGGACTCAGGTATCCACAGGCCATGAATTCCTTCCTAAATGAGCGGTCATCGCCGTGCAGGACCTTAAGGCAAGAAGCATCGGCTGACAGATGTGATCTCTGAACCTGATAGATTGCTGATTTTATCTTATTTTATCCTTGACTTGGTACAAGTTTTGGGATTTCTGAAAAGACCATACAGATAACCACAAATATCAAGAAAGTCGTCTTCAGTATTAAGTAGAATTTAGATTTAGGTTTCCTTCCTGCTTCCCACCTCCTTCGAATAAGGAAACGTCTTTGGGACCAACTTTATGGAATAAATAAGCTGAGCTGTATTTCAAGTAATATAGTTATAAATTAACAATGTAGCAGTTATTGATAGAGAAATTGAGAAAACTGAAACGTGACCGGAGTATTGGAAATAACGTAGTACATCACCTAGCACAATGACACATAGTAGGTGCTCAATAAATTTATGCTTATAATTTTTGTCACTTCTATGGCAGGATTTTTTTATTAGGTTAAAATTATCTTTTAAACACCTTCCGGAATTTTAGAATATTCATTAATAATGTCTTCAAACCTTTCAACTGAAATAAATTTACAGCTGAAGTCTGATGATTTAAAGTTAGAAAGTTTAATCTTGAATATAAATGAACATTTTCTCTCCCACATTTTCTTGGGCATTTTGAGAAGTAAATGCGTTATTTATTGGTCCATGAAATGTGACTGTAAATATTCTTTGCTATACATTATGTCTATATATCTGCATTCATCCTCAATGCCAAAACTAGAATCATTAGTCTTAATGATCATTTTAAGTACAGGCAGTCCTCGCTTTCCTTGATACCATGTTAACCGAAACTTGTGTATGTCAACACGGTGTCCTTGCTTTGCTTGGTTAAGTGTGAGTTCTTCCTCCCTTTTTTTAAGAGTTGTACAATGTTTTTCAGTCGCCTACCGAATCAGGTCATAGACTATGGAATTGACCCCACCCCACCAACATTTTTACAGCTACCCTGATTTCTGACCAGAAAGGAAAAAAAAACTTTCCAGCTCTATCACACATTTTACCTACTCTTAAACTTAGGAGGTATTACAAATAGCATTTTCTCATGTTCTCTTTCTGGCCTGTACCTCCCTGCTAAGCTTCCTTCAGTGTTCATCCTCACCTCATAGAGAGATGAAGTGAAGAGACAAACAGAAGTCATTTTCTTCCTTACTTTAGTGGTTCAACACCTAGTGGAGTACGTAGCCAATAGTAGATGCTTAATAAACATTTCTTAAATTAATATTGTTGACCTTTTCTGACCCTGTTCTTGACAGTAAGGTACATAATCTGCCTTCATCCCTTTAGTCCTTAGGAACAGATAAAGTCATGGATATGAAAGTGATCACTGTCATTAATATCCACATTAAAATTGCTCTTGATTTTAGTTTCTCCATAATCATTTTCCCTAAACAATGAACTCTGTTCACCTTTTTTTTTAAAATATGCACAGTGAATATTACTGGTAGCCCAAATCTTCTAACATAAAATTTCCATTTTGTAAAAGCTTCTGATAAGCATATATGTTATGAATTGAATGTTTGATTATTATACTTTAATATTCTTGAAAATATTGATACCTGGACTGGAAAGAAAACAGACAAAAGTAAATCTCAGAATAAATTACTGCTTTAAACATG</dnaseq>| | sequence = <dnaseq>CCTCCTTAGTAGAGCGGAATGAGTAATACCCACACGGTGCTTGTCTCACTTCCCCATCCGCACCCGGCCCTCACCTGCTGTCACCTCGGCCTCCCACACCCGGTCCGCGCTCCCCGCCCTCTTCCTCGCGTAGAACCGTGGGATCCTAGGTGGCAGGACTCAGGTATCCACAGGCCATGAATTCCTTCCTAAATGAGCGGTCATCGCCGTGCAGGACCTTAAGGCAAGAAGCATCGGCTGACAGATGTGATCTCTGAACCTGATAGATTGCTGATTTTATCTTATTTTATCCTTGACTTGGTACAAGTTTTGGGATTTCTGAAAAGACCATACAGATAACCACAAATATCAAGAAAGTCGTCTTCAGTATTAAGTAGAATTTAGATTTAGGTTTCCTTCCTGCTTCCCACCTCCTTCGAATAAGGAAACGTCTTTGGGACCAACTTTATGGAATAAATAAGCTGAGCTGTATTTCAAGTAATATAGTTATAAATTAACAATGTAGCAGTTATTGATAGAGAAATTGAGAAAACTGAAACGTGACCGGAGTATTGGAAATAACGTAGTACATCACCTAGCACAATGACACATAGTAGGTGCTCAATAAATTTATGCTTATAATTTTTGTCACTTCTATGGCAGGATTTTTTTATTAGGTTAAAATTATCTTTTAAACACCTTCCGGAATTTTAGAATATTCATTAATAATGTCTTCAAACCTTTCAACTGAAATAAATTTACAGCTGAAGTCTGATGATTTAAAGTTAGAAAGTTTAATCTTGAATATAAATGAACATTTTCTCTCCCACATTTTCTTGGGCATTTTGAGAAGTAAATGCGTTATTTATTGGTCCATGAAATGTGACTGTAAATATTCTTTGCTATACATTATGTCTATATATCTGCATTCATCCTCAATGCCAAAACTAGAATCATTAGTCTTAATGATCATTTTAAGTACAGGCAGTCCTCGCTTTCCTTGATACCATGTTAACCGAAACTTGTGTATGTCAACACGGTGTCCTTGCTTTGCTTGGTTAAGTGTGAGTTCTTCCTCCCTTTTTTTAAGAGTTGTACAATGTTTTTCAGTCGCCTACCGAATCAGGTCATAGACTATGGAATTGACCCCACCCCACCAACATTTTTACAGCTACCCTGATTTCTGACCAGAAAGGAAAAAAAAACTTTCCAGCTCTATCACACATTTTACCTACTCTTAAACTTAGGAGGTATTACAAATAGCATTTTCTCATGTTCTCTTTCTGGCCTGTACCTCCCTGCTAAGCTTCCTTCAGTGTTCATCCTCACCTCATAGAGAGATGAAGTGAAGAGACAAACAGAAGTCATTTTCTTCCTTACTTTAGTGGTTCAACACCTAGTGGAGTACGTAGCCAATAGTAGATGCTTAATAAACATTTCTTAAATTAATATTGTTGACCTTTTCTGACCCTGTTCTTGACAGTAAGGTACATAATCTGCCTTCATCCCTTTAGTCCTTAGGAACAGATAAAGTCATGGATATGAAAGTGATCACTGTCATTAATATCCACATTAAAATTGCTCTTGATTTTAGTTTCTCCATAATCATTTTCCCTAAACAATGAACTCTGTTCACCTTTTTTTTTAAAATATGCACAGTGAATATTACTGGTAGCCCAAATCTTCTAACATAAAATTTCCATTTTGTAAAAGCTTCTGATAAGCATATATGTTATGAATTGAATGTTTGATTATTATACTTTAATATTCTTGAAAATATTGATACCTGGACTGGAAAGAAAACAGACAAAAGTAAATCTCAGAATAAATTACTGCTTTAAACATG</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG005548]] |
Revision as of 11:11, 13 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT012612 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1825 nt |
Genomic location |
chr10-:31605458..31607365 |
Exon number |
3 |
Exons |
31605458..31605914,31605991..31607195,31607203..31607365 |
Genome context |
|
Sequence |
000001 CCTCCTTAGT AGAGCGGAAT GAGTAATACC CACACGGTGC TTGTCTCACT TCCCCATCCG CACCCGGCCC TCACCTGCTG 000080
000081 TCACCTCGGC CTCCCACACC CGGTCCGCGC TCCCCGCCCT CTTCCTCGCG TAGAACCGTG GGATCCTAGG TGGCAGGACT 000160 000161 CAGGTATCCA CAGGCCATGA ATTCCTTCCT AAATGAGCGG TCATCGCCGT GCAGGACCTT AAGGCAAGAA GCATCGGCTG 000240 000241 ACAGATGTGA TCTCTGAACC TGATAGATTG CTGATTTTAT CTTATTTTAT CCTTGACTTG GTACAAGTTT TGGGATTTCT 000320 000321 GAAAAGACCA TACAGATAAC CACAAATATC AAGAAAGTCG TCTTCAGTAT TAAGTAGAAT TTAGATTTAG GTTTCCTTCC 000400 000401 TGCTTCCCAC CTCCTTCGAA TAAGGAAACG TCTTTGGGAC CAACTTTATG GAATAAATAA GCTGAGCTGT ATTTCAAGTA 000480 000481 ATATAGTTAT AAATTAACAA TGTAGCAGTT ATTGATAGAG AAATTGAGAA AACTGAAACG TGACCGGAGT ATTGGAAATA 000560 000561 ACGTAGTACA TCACCTAGCA CAATGACACA TAGTAGGTGC TCAATAAATT TATGCTTATA ATTTTTGTCA CTTCTATGGC 000640 000641 AGGATTTTTT TATTAGGTTA AAATTATCTT TTAAACACCT TCCGGAATTT TAGAATATTC ATTAATAATG TCTTCAAACC 000720 000721 TTTCAACTGA AATAAATTTA CAGCTGAAGT CTGATGATTT AAAGTTAGAA AGTTTAATCT TGAATATAAA TGAACATTTT 000800 000801 CTCTCCCACA TTTTCTTGGG CATTTTGAGA AGTAAATGCG TTATTTATTG GTCCATGAAA TGTGACTGTA AATATTCTTT 000880 000881 GCTATACATT ATGTCTATAT ATCTGCATTC ATCCTCAATG CCAAAACTAG AATCATTAGT CTTAATGATC ATTTTAAGTA 000960 000961 CAGGCAGTCC TCGCTTTCCT TGATACCATG TTAACCGAAA CTTGTGTATG TCAACACGGT GTCCTTGCTT TGCTTGGTTA 001040 001041 AGTGTGAGTT CTTCCTCCCT TTTTTTAAGA GTTGTACAAT GTTTTTCAGT CGCCTACCGA ATCAGGTCAT AGACTATGGA 001120 001121 ATTGACCCCA CCCCACCAAC ATTTTTACAG CTACCCTGAT TTCTGACCAG AAAGGAAAAA AAAACTTTCC AGCTCTATCA 001200 001201 CACATTTTAC CTACTCTTAA ACTTAGGAGG TATTACAAAT AGCATTTTCT CATGTTCTCT TTCTGGCCTG TACCTCCCTG 001280 001281 CTAAGCTTCC TTCAGTGTTC ATCCTCACCT CATAGAGAGA TGAAGTGAAG AGACAAACAG AAGTCATTTT CTTCCTTACT 001360 001361 TTAGTGGTTC AACACCTAGT GGAGTACGTA GCCAATAGTA GATGCTTAAT AAACATTTCT TAAATTAATA TTGTTGACCT 001440 001441 TTTCTGACCC TGTTCTTGAC AGTAAGGTAC ATAATCTGCC TTCATCCCTT TAGTCCTTAG GAACAGATAA AGTCATGGAT 001520 001521 ATGAAAGTGA TCACTGTCAT TAATATCCAC ATTAAAATTG CTCTTGATTT TAGTTTCTCC ATAATCATTT TCCCTAAACA 001600 001601 ATGAACTCTG TTCACCTTTT TTTTTAAAAT ATGCACAGTG AATATTACTG GTAGCCCAAA TCTTCTAACA TAAAATTTCC 001680 001681 ATTTTGTAAA AGCTTCTGAT AAGCATATAT GTTATGAATT GAATGTTTGA TTATTATACT TTAATATTCT TGAAAATATT 001760 001761 GATACCTGGA CTGGAAAGAA AACAGACAAA AGTAAATCTC AGAATAAATT ACTGCTTTAA ACATG |
Predicted Small Protein
Name | NONHSAT012612_smProtein_707:982 |
Length | 92 |
Molecular weight | 10457.339 |
Aromaticity | 0.0879120879121 |
Instability index | 64.4241758242 |
Isoelectric point | 7.73651123047 |
Runs | 11 |
Runs residual | 0.0125915750916 |
Runs probability | 0.0807920219685 |
Amino acid sequence | MSSNLSTEINLQLKSDDLKLESLILNINEHFLSHIFLGILRSKCVIYWSMKCDCKYSLLY IMSIYLHSSSMPKLESLVLMIILSTGSPRFP |
Secondary structure | LLLLLLHHHHHHLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHLEEEEEEEELLLLLHHHH HHHHHHLLLLLHHHHHHHHHHHHHLLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLHHHHHHHH HHHHHHHHHHLLLLLLLLLLLLLLLLLLLLL |
PiMo | ooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiTTTTTTTT TTTTTTTTTTooooooooooooooooooooo |