Difference between revisions of "NONHSAT130449"

From LncRNAWiki
Jump to: navigation, search
(Created page with "Please input one-sentence summary here. ==Annotated Information== ===Transcriptomic Nomeclature=== Please input transcriptomic nomeclature information here. ===Functio...")
 
Line 42: Line 42:
 
sequence = <dnaseq>gtttgtttggtttgtgttttgtttgtttgtttgtttgtGTCTTCCTGAGTTACATTTTCTGTCTACAGTTGGCTGGCTATGCAGTGAAGCTCCATATGTCCCACATTCATTCTTCAGAATAACTTGGGCAAGTTCTCATGGTGAAAGTAGAGGTGCAAAGGTAAACAAGTCCAATTATCTAAGTATGTGCGAAGTCTCTATTTGTGTCTTGTTTACAAACAGCACGTGGCCAAAGCTATGAATCACAACATTAAGGGCTGAGTAAAATTTCCTGCCCAGACTTGGACAGTACTTGAAACTTGTATACGAAAAGAACAGATATAAAGAGGGGAGAAAGAATTTGGGCTGAAATTCAATCTATCACActttcccaacctaatagctcatatttctttttgtttgatgagttagttcatcagtacaatgctgataggaagactgatagttaacatttatgtcgtgtttctaTATGTAATAGGAAGGAtctggagtacatttttgatgaatataaaattttaagtttatggttttcttctttcagctcttcaagcattttttcctactgtctAATGAACAGTCTGTATTAATTTTAGTTTTGTTCCTGTCTTTATAAGTTTACCTGTTCTCTCtttttcaaaataaactgttaattttagagccattttagatttacagaaaaattgtgaagagagtacagagttgccattacccccataaatgcaggtttttcctgttttaacatcttacattagtgtggtaaatttgttacaattaattaggcaatatttatacattagtattaaatacatccatattctattcagattttgttcataatgttcttttttgttccaggatttcatctgaataccaaattacttttggtcatcatgtcttcttaagctcctcttggctgtgacactctcagacaagaattttgataatcatgtttttataaccttgacagttttctagagtacagtcaggtatttcccacaatgagagttgtatgatgctttcctataattagactgggatgatggggatacatggagggaaggcacagaagtaaggcatggaggtaaatcatcgtggaaaagctattttatcacagtatgccaagtgtacataacattgtagatgtaaaccatgattacctggatgaggtagcaattgcagattttcttactgtaaagttattctttttcctcccttgttatatagcaccatttggaagcaagtcactacgcataattcacaattgagtaataaagatttatgcttcacctctttgaaggtagagtatctacatatattatttgacattcatctctatttgttcagtcatttattcatatcaatatggattcatggataatta</dnaseq>|
 
sequence = <dnaseq>gtttgtttggtttgtgttttgtttgtttgtttgtttgtGTCTTCCTGAGTTACATTTTCTGTCTACAGTTGGCTGGCTATGCAGTGAAGCTCCATATGTCCCACATTCATTCTTCAGAATAACTTGGGCAAGTTCTCATGGTGAAAGTAGAGGTGCAAAGGTAAACAAGTCCAATTATCTAAGTATGTGCGAAGTCTCTATTTGTGTCTTGTTTACAAACAGCACGTGGCCAAAGCTATGAATCACAACATTAAGGGCTGAGTAAAATTTCCTGCCCAGACTTGGACAGTACTTGAAACTTGTATACGAAAAGAACAGATATAAAGAGGGGAGAAAGAATTTGGGCTGAAATTCAATCTATCACActttcccaacctaatagctcatatttctttttgtttgatgagttagttcatcagtacaatgctgataggaagactgatagttaacatttatgtcgtgtttctaTATGTAATAGGAAGGAtctggagtacatttttgatgaatataaaattttaagtttatggttttcttctttcagctcttcaagcattttttcctactgtctAATGAACAGTCTGTATTAATTTTAGTTTTGTTCCTGTCTTTATAAGTTTACCTGTTCTCTCtttttcaaaataaactgttaattttagagccattttagatttacagaaaaattgtgaagagagtacagagttgccattacccccataaatgcaggtttttcctgttttaacatcttacattagtgtggtaaatttgttacaattaattaggcaatatttatacattagtattaaatacatccatattctattcagattttgttcataatgttcttttttgttccaggatttcatctgaataccaaattacttttggtcatcatgtcttcttaagctcctcttggctgtgacactctcagacaagaattttgataatcatgtttttataaccttgacagttttctagagtacagtcaggtatttcccacaatgagagttgtatgatgctttcctataattagactgggatgatggggatacatggagggaaggcacagaagtaaggcatggaggtaaatcatcgtggaaaagctattttatcacagtatgccaagtgtacataacattgtagatgtaaaccatgattacctggatgaggtagcaattgcagattttcttactgtaaagttattctttttcctcccttgttatatagcaccatttggaagcaagtcactacgcataattcacaattgagtaataaagatttatgcttcacctctttgaaggtagagtatctacatatattatttgacattcatctctatttgttcagtcatttattcatatcaatatggattcatggataatta</dnaseq>|
 
}}
 
}}
[[Category:Intergenic]]
+
[[Category:Intergenic]][[Category:NONHSAG051908]]

Revision as of 11:14, 13 October 2014

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT130449

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1381 nt

Genomic location

chr9+:22767106..22768486

Exon number

1

Exons

22767106..22768486

Genome context

Sequence
000001 gtttgtttgg tttgtgtttt gtttgtttgt ttgtttgtGT CTTCCTGAGT TACATTTTCT GTCTACAGTT GGCTGGCTAT 000080
000081 GCAGTGAAGC TCCATATGTC CCACATTCAT TCTTCAGAAT AACTTGGGCA AGTTCTCATG GTGAAAGTAG AGGTGCAAAG 000160
000161 GTAAACAAGT CCAATTATCT AAGTATGTGC GAAGTCTCTA TTTGTGTCTT GTTTACAAAC AGCACGTGGC CAAAGCTATG 000240
000241 AATCACAACA TTAAGGGCTG AGTAAAATTT CCTGCCCAGA CTTGGACAGT ACTTGAAACT TGTATACGAA AAGAACAGAT 000320
000321 ATAAAGAGGG GAGAAAGAAT TTGGGCTGAA ATTCAATCTA TCACActttc ccaacctaat agctcatatt tctttttgtt 000400
000401 tgatgagtta gttcatcagt acaatgctga taggaagact gatagttaac atttatgtcg tgtttctaTA TGTAATAGGA 000480
000481 AGGAtctgga gtacattttt gatgaatata aaattttaag tttatggttt tcttctttca gctcttcaag cattttttcc 000560
000561 tactgtctAA TGAACAGTCT GTATTAATTT TAGTTTTGTT CCTGTCTTTA TAAGTTTACC TGTTCTCTCt ttttcaaaat 000640
000641 aaactgttaa ttttagagcc attttagatt tacagaaaaa ttgtgaagag agtacagagt tgccattacc cccataaatg 000720
000721 caggtttttc ctgttttaac atcttacatt agtgtggtaa atttgttaca attaattagg caatatttat acattagtat 000800
000801 taaatacatc catattctat tcagattttg ttcataatgt tcttttttgt tccaggattt catctgaata ccaaattact 000880
000881 tttggtcatc atgtcttctt aagctcctct tggctgtgac actctcagac aagaattttg ataatcatgt ttttataacc 000960
000961 ttgacagttt tctagagtac agtcaggtat ttcccacaat gagagttgta tgatgctttc ctataattag actgggatga 001040
001041 tggggataca tggagggaag gcacagaagt aaggcatgga ggtaaatcat cgtggaaaag ctattttatc acagtatgcc 001120
001121 aagtgtacat aacattgtag atgtaaacca tgattacctg gatgaggtag caattgcaga ttttcttact gtaaagttat 001200
001201 tctttttcct cccttgttat atagcaccat ttggaagcaa gtcactacgc ataattcaca attgagtaat aaagatttat 001280
001281 gcttcacctc tttgaaggta gagtatctac atatattatt tgacattcat ctctatttgt tcagtcattt attcatatca 001360
001361 atatggattc atggataatt a
[back to top]

Predicted Small Protein

Name NONHSAT130449_smProtein_1115:1264
Length 50
Molecular weight 5621.4866
Aromaticity 0.142857142857
Instability index 47.6367346939
Isoelectric point 5.73333740234
Runs 10
Runs residual 0.0420297848869
Runs probability 0.0555643879174
Amino acid sequence MPSVHNIVDVNHDYLDEVAIADFLTVKLFFFLPCYIAPFGSKSLRIIHN
Secondary structure LLLLLEEELLLLLHHHHHHHHHHHHHHHEEELLLEELLLLLLLEEEEEL
PRMN LLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLL
PiMo ooooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiii