Difference between revisions of "NONHSAT012977"

Revision as of 11:19, 13 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID	NONHSAT012977
Source	NONCODE4.0
Same with	,
Classification	intergenic
Length	1946 nt
Genomic location	chr10+:44124265..44170151
Exon number	5
Exons	44124265..44124426,44166569..44166969,44167166..44167526,44167756..44167893,44169282..44170151
Genome context
Sequence	000001 GGTGGACTGG ACTTGGTGGA TGGTGTGGAA GGGACTTTGG GAGAGACCTG TGCCCATGAT AAAAGGGAAG ATGAAGATGT 000080 000081 TCCTTTGAGT TTGCATGTGT GGGGCCTTTT TGGCATGGTT GACTTGTCTG TACTCCTTCC TGTGACTTGA CATCAAAATT 000160 000161 AGCCTTGCAG CTTCAGGACT GCTGATCCTG ATTATGCTGT GCAAAGGGTG TTCGTTCCAC GGTCACACTG TCTCTATGAG 000240 000241 GCAGCAACGT CTAGGAGTGT TATCCCCATT GAGGGGGCAG ATAAACCAAG GAAGGAGGAG GGCAGGTGCT GGCCCAAGTC 000320 000321 ACACACAGAT GAAGGCACAC ATGGTCACGC ATACCTGGGA AAGCTTAGCA GCACTCCTGG CTCTCCTCAG GAGTTCATAG 000400 000401 AACCCTGCGC TGTGTGGACC ACCGAGCTCA GAAGGGTTGC TGTGTGATGC TCGAATCAGG AGGCTCTGAT GGACTCTTCC 000480 000481 CTTCTCTGTC TCTCCAGCAT CTGACTGAGG CACGTTTATG GGACTCTGGC GAGGAAGACT CCGGTTTGCA GAACACCTCC 000560 000561 AATGGCCACT GCTTAAATTG AACAAATGAT GCATCACAAA ACTACAACGG GACTCTTCAA ATTCACGGTC GGCGCAATCT 000640 000641 GTATGTAATT GTATTGCAAC AATTGTCCAG CAGATGGCAG TAAAGTGTCA TGAAACAGAG TTGCCTGGTG ACCTGTGCTG 000720 000721 CACCTTTGTG AGTTAGCGGT GACCAGGCTT CACACACTGG ACTTACTGGA GTCACTACTA AGCCAAGGCC ACAGCAGAAA 000800 000801 GAGCACTGCG TTTTGCATGA CCTAGGGGCT CCAAGTCGGC CTGGCTGCAC CAGAGCCCTT TCAAAACACG CGGTTTAGTT 000880 000881 CAGGGCTCAC ATTGGCCATT GCCTGGTTTT GTTTGGCCAG CAAGGAAAAT GTGCAAAGCC CTGGATTGCT CCTTTGGGAC 000960 000961 TTCATCAGCT GCAAACCCTC ACAGTATTTT TGTGTGTTTG GAAGTAAGAA GAGAGCAAGC GAGGGCCGAG ACCTAATGGG 001040 001041 AAGACCCGGC GGCTGGGAGA AGGGCTCCTG GCCAGGATCC GTGAGTCGGC TTCTTGAAGT GAAAGACAGA ACTCTCTGCT 001120 001121 CTTCAGGTTC TATCAGTGCA AAGAGGGCCC ACTAAGACCC ACTCTGCAGG GCTGTTGAGG AAAGCCCCAT CTGACAGGCA 001200 001201 CCCGACAAAG CTCCTCACAC TCCGTAAATG CCACCCATCA TGAATGTGGC TATGATTAAA TTGTGATGAG GACTGTGACC 001280 001281 CACAAGACTG GAAAACCAGT TTGGCACCTT GATGCAGATG TTTTCAAGGA CTGGGTTAGA GAATACATAC CATCATTCTA 001360 001361 CTTTTAGCTG TTTTGTTTCA TTAAAACCTT TTTGGTTTTA ATGAAACAAA CCATAACATG TATGACAACC ATAACATGTA 001440 001441 TGACAACATA GCATGACAAC CATAACAAGT ACAATATTTT GGCCAATTTC ATTTAATTTG GCACATAGAA TGGAAGAAAT 001520 001521 ATTAAGATAT TATTTTCTAC ATGACTATGT AGCTGGGATG ATTGGAACTG AATCATTTAT TGCACATTTG AATGGTTAAT 001600 001601 TTTATTATGC TCACATTGTG TACATATTCT GTGGCTTATA TATAATCAGT AAATATTCTA TGACTTATTC CTCTTCAGAA 001680 001681 ACATGTGGAA AGATGAACAA AAAACAACCA CAGCATGACA GGGTTAGGGA ATTCTAGAAA TGGAAAAGAT GTTAAAAATG 001760 001761 GGTTTATAGT AAAATCCAAC ATCTAGAGGA AGGATTTAAA GTCTAAGCAG AAACCCTTTC TGGCGGTCTG CAGAAGTCTC 001840 001841 CCATCTTGCT AAAGTGTCAC ATTTGGCACA TATTCCTGGA AAACGTTTTA GTGTTTTTCA ATTAAATTCC TTACTGCTGT 001920 001921 CCCTCTTGAC AAAAAAAAAA AAAAAA

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Predicted Small Protein

<

Name	`NONHSAT012977_smProtein_446:580`
Length	`45`
Molecular weight	`4703.9972`
Aromaticity	`0.0454545454545`
Instability index	`68.1454545455`
Isoelectric point	`4.18878173828`
Runs	`5`
Runs residual	`0.0494652406417`
Runs probability	`0.0366189719132`
Amino acid sequence	`MLESGGSDGLFPSLSLQHLTEARLWDSGEEDSGLQNTSNGHCLN`
Secondary structure	`LLLLLLLLLLLLLLLHHHHHHHHHHHLLLLLLLLLLLLLLEELL`
PRMN	`-`

@@ Line 42: / Line 42: @@
 sequence = <dnaseq>GGTGGACTGGACTTGGTGGATGGTGTGGAAGGGACTTTGGGAGAGACCTGTGCCCATGATAAAAGGGAAGATGAAGATGTTCCTTTGAGTTTGCATGTGTGGGGCCTTTTTGGCATGGTTGACTTGTCTGTACTCCTTCCTGTGACTTGACATCAAAATTAGCCTTGCAGCTTCAGGACTGCTGATCCTGATTATGCTGTGCAAAGGGTGTTCGTTCCACGGTCACACTGTCTCTATGAGGCAGCAACGTCTAGGAGTGTTATCCCCATTGAGGGGGCAGATAAACCAAGGAAGGAGGAGGGCAGGTGCTGGCCCAAGTCACACACAGATGAAGGCACACATGGTCACGCATACCTGGGAAAGCTTAGCAGCACTCCTGGCTCTCCTCAGGAGTTCATAGAACCCTGCGCTGTGTGGACCACCGAGCTCAGAAGGGTTGCTGTGTGATGCTCGAATCAGGAGGCTCTGATGGACTCTTCCCTTCTCTGTCTCTCCAGCATCTGACTGAGGCACGTTTATGGGACTCTGGCGAGGAAGACTCCGGTTTGCAGAACACCTCCAATGGCCACTGCTTAAATTGAACAAATGATGCATCACAAAACTACAACGGGACTCTTCAAATTCACGGTCGGCGCAATCTGTATGTAATTGTATTGCAACAATTGTCCAGCAGATGGCAGTAAAGTGTCATGAAACAGAGTTGCCTGGTGACCTGTGCTGCACCTTTGTGAGTTAGCGGTGACCAGGCTTCACACACTGGACTTACTGGAGTCACTACTAAGCCAAGGCCACAGCAGAAAGAGCACTGCGTTTTGCATGACCTAGGGGCTCCAAGTCGGCCTGGCTGCACCAGAGCCCTTTCAAAACACGCGGTTTAGTTCAGGGCTCACATTGGCCATTGCCTGGTTTTGTTTGGCCAGCAAGGAAAATGTGCAAAGCCCTGGATTGCTCCTTTGGGACTTCATCAGCTGCAAACCCTCACAGTATTTTTGTGTGTTTGGAAGTAAGAAGAGAGCAAGCGAGGGCCGAGACCTAATGGGAAGACCCGGCGGCTGGGAGAAGGGCTCCTGGCCAGGATCCGTGAGTCGGCTTCTTGAAGTGAAAGACAGAACTCTCTGCTCTTCAGGTTCTATCAGTGCAAAGAGGGCCCACTAAGACCCACTCTGCAGGGCTGTTGAGGAAAGCCCCATCTGACAGGCACCCGACAAAGCTCCTCACACTCCGTAAATGCCACCCATCATGAATGTGGCTATGATTAAATTGTGATGAGGACTGTGACCCACAAGACTGGAAAACCAGTTTGGCACCTTGATGCAGATGTTTTCAAGGACTGGGTTAGAGAATACATACCATCATTCTACTTTTAGCTGTTTTGTTTCATTAAAACCTTTTTGGTTTTAATGAAACAAACCATAACATGTATGACAACCATAACATGTATGACAACATAGCATGACAACCATAACAAGTACAATATTTTGGCCAATTTCATTTAATTTGGCACATAGAATGGAAGAAATATTAAGATATTATTTTCTACATGACTATGTAGCTGGGATGATTGGAACTGAATCATTTATTGCACATTTGAATGGTTAATTTTATTATGCTCACATTGTGTACATATTCTGTGGCTTATATATAATCAGTAAATATTCTATGACTTATTCCTCTTCAGAAACATGTGGAAAGATGAACAAAAAACAACCACAGCATGACAGGGTTAGGGAATTCTAGAAATGGAAAAGATGTTAAAAATGGGTTTATAGTAAAATCCAACATCTAGAGGAAGGATTTAAAGTCTAAGCAGAAACCCTTTCTGGCGGTCTGCAGAAGTCTCCCATCTTGCTAAAGTGTCACATTTGGCACATATTCCTGGAAAACGTTTTAGTGTTTTTCAATTAAATTCCTTACTGCTGTCCCTCTTGACAAAAAAAAAAAAAAAA</dnaseq>|
 }}
-[[Category:Intergenic]]
+[[Category:Intergenic]][[Category:NONHSAG005721]]