Difference between revisions of "NONHSAT131667"

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sequence = <dnaseq>ACGGCGTGTTGGTCCCAGCGGTTCAGCTGAGGTAGGGACGTGCTGTAGGCCGGAATGTTACCGGCTGTTGGATCTGTGGATGAGGAAGAGGATCCTGCGGAGGAGGATTGTCCTGAATTGGTTCCCATTGAGACGACGCAAAGCGAGGAGGAGGAAAAGTCTGGCCTCGGCGCCAAGATCCCAGTCACAATTATCACCGGGTATTTAGTTATTCAGAGGCTGCTCTACTGAGAAGATGAACAAATTTCTTGTCCAAAACAATGTATTTCAAACGTGCCCCTCGGGCCTTTCCCGTGTTGCTCACTGGTGCTGGGAAGACAACACTTCTGAACTATATTTTGACAGAGCAACATAGTAAAAGAGTAGCGGTCATTTTAAATGAATCTGGGGAAGGAAGTGCGCTGGAGAAATCCTTAGCTGTCAGCCAAGGTGGAGAGCTCTATGAAGAGTGGCTGGAACTTAGAAACGGTTGCCTCTGCTGTTCAGTGAAGTGAGGAATGTGTTTACTGTGTACATGGTTTACTAGAAATGTTTATTGATTATATTTCCAGCTTTAATTTTCTTGAGTAATTTAACTGAATTTACACAGTTTGCTTCATTGTATTTTCAAACAAATAGAAAATAAACTTATTAGGAAGCATTTTCTTAAAGTGTTTCTTGCTGTCTTTTCTATCTGCTCTAATGTTTTGGTCCTTTTATTGAGTTTTTATTGCTTTTGATGTCAGGGCTTATTTAATCTCTAGTGCATGAAAGTCTCATATGTAAAAAATGATTATTCTGAATTTAATCTGTCATTGGTCATACTTCTAAGTGTTCAACCTTATAAAA</dnaseq>|
 
sequence = <dnaseq>ACGGCGTGTTGGTCCCAGCGGTTCAGCTGAGGTAGGGACGTGCTGTAGGCCGGAATGTTACCGGCTGTTGGATCTGTGGATGAGGAAGAGGATCCTGCGGAGGAGGATTGTCCTGAATTGGTTCCCATTGAGACGACGCAAAGCGAGGAGGAGGAAAAGTCTGGCCTCGGCGCCAAGATCCCAGTCACAATTATCACCGGGTATTTAGTTATTCAGAGGCTGCTCTACTGAGAAGATGAACAAATTTCTTGTCCAAAACAATGTATTTCAAACGTGCCCCTCGGGCCTTTCCCGTGTTGCTCACTGGTGCTGGGAAGACAACACTTCTGAACTATATTTTGACAGAGCAACATAGTAAAAGAGTAGCGGTCATTTTAAATGAATCTGGGGAAGGAAGTGCGCTGGAGAAATCCTTAGCTGTCAGCCAAGGTGGAGAGCTCTATGAAGAGTGGCTGGAACTTAGAAACGGTTGCCTCTGCTGTTCAGTGAAGTGAGGAATGTGTTTACTGTGTACATGGTTTACTAGAAATGTTTATTGATTATATTTCCAGCTTTAATTTTCTTGAGTAATTTAACTGAATTTACACAGTTTGCTTCATTGTATTTTCAAACAAATAGAAAATAAACTTATTAGGAAGCATTTTCTTAAAGTGTTTCTTGCTGTCTTTTCTATCTGCTCTAATGTTTTGGTCCTTTTATTGAGTTTTTATTGCTTTTGATGTCAGGGCTTATTTAATCTCTAGTGCATGAAAGTCTCATATGTAAAAAATGATTATTCTGAATTTAATCTGTCATTGGTCATACTTCTAAGTGTTCAACCTTATAAAA</dnaseq>|
 
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[[Category:Sense]]
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[[Category:Sense]][[Category:NONHSAG052462]]

Revision as of 11:41, 13 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT131667

Source

NONCODE4.0

Same with

,

Classification

sense

Length

828 nt

Genomic location

chr9-:69256455..69262541

Exon number

4

Exons

69256455..69256889,69259222..69259308,69261239..69261336,69262334..69262541

Genome context

Sequence
000001 ACGGCGTGTT GGTCCCAGCG GTTCAGCTGA GGTAGGGACG TGCTGTAGGC CGGAATGTTA CCGGCTGTTG GATCTGTGGA 000080
000081 TGAGGAAGAG GATCCTGCGG AGGAGGATTG TCCTGAATTG GTTCCCATTG AGACGACGCA AAGCGAGGAG GAGGAAAAGT 000160
000161 CTGGCCTCGG CGCCAAGATC CCAGTCACAA TTATCACCGG GTATTTAGTT ATTCAGAGGC TGCTCTACTG AGAAGATGAA 000240
000241 CAAATTTCTT GTCCAAAACA ATGTATTTCA AACGTGCCCC TCGGGCCTTT CCCGTGTTGC TCACTGGTGC TGGGAAGACA 000320
000321 ACACTTCTGA ACTATATTTT GACAGAGCAA CATAGTAAAA GAGTAGCGGT CATTTTAAAT GAATCTGGGG AAGGAAGTGC 000400
000401 GCTGGAGAAA TCCTTAGCTG TCAGCCAAGG TGGAGAGCTC TATGAAGAGT GGCTGGAACT TAGAAACGGT TGCCTCTGCT 000480
000481 GTTCAGTGAA GTGAGGAATG TGTTTACTGT GTACATGGTT TACTAGAAAT GTTTATTGAT TATATTTCCA GCTTTAATTT 000560
000561 TCTTGAGTAA TTTAACTGAA TTTACACAGT TTGCTTCATT GTATTTTCAA ACAAATAGAA AATAAACTTA TTAGGAAGCA 000640
000641 TTTTCTTAAA GTGTTTCTTG CTGTCTTTTC TATCTGCTCT AATGTTTTGG TCCTTTTATT GAGTTTTTAT TGCTTTTGAT 000720
000721 GTCAGGGCTT ATTTAATCTC TAGTGCATGA AAGTCTCATA TGTAAAAAAT GATTATTCTG AATTTAATCT GTCATTGGTC 000800
000801 ATACTTCTAA GTGTTCAACC TTATAAAA
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Predicted Small Protein

Name NONHSAT131667_smProtein_260:493
Length 78
Molecular weight 8489.7366
Aromaticity 0.0779220779221
Instability index 44.5142857143
Isoelectric point 7.70806884766
Runs 13
Runs residual 0.0327498588368
Runs probability 0.0431223078282
Amino acid sequence MYFKRAPRAFPVLLTGAGKTTLLNYILTEQHSKRVAVILNESGEGSALEKSLAVSQGGEL
YEEWLELRNGCLCCSVK
Secondary structure LLLLLLLLLLLEEELLLLHHHHHHHHHHHHHLLLEEEEELLLLLLHHHHHHHHHHLLLHH
HHHHHHHHLLEEEEEEL
PRMN -
PiMo -