Difference between revisions of "NONHSAT068490"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>GAAAACTTTATTCTCAAGAGATTTCTCATTCCGCAGAAATAAGGATCTGGCATGTCAACACAAACATAGGAAGTTGAGGCAGTCAAAGGGAAATAACTGCTACCCTGACTCTGCTGAGAGCCTCACAAGTCCCTGTGCACGCCAGCTTGTTTGCCAaaaaagatgttgctggtccatttgacgaagaagtccagagcggcttgtgacttcagtctggctttgcagagcccaggtgctctctccaccttctgccaggttcccctatgaaggctttgctctcagactctccccttgtggagacaaaaatcccacagcaAGTGGAAACAGAAGTGCCTTGGAAAAAGTTATTCTGGCAGCTCCTATACAAGTCCCCCATCAGATGCTGGTATTGGACCAGCTTTGGTTATAAAGCCCTGCTGTGGCACCAAAAGGAATGTCGTCCTGATACAGCAGCCTCGGGTCACCCAATCCACTCCAGATACTATGGCTGCAGCATCAATGTAAGCAGACAAGTTGTGCTGCCTCTGAAATAAAGTAGATGAAATATTCAGCAGCAGAAAGAACAAGTTTCCACTCCAGTGAACTAATTCAAATGTATCCAGCATCTAGATATATGTATAAATGTAATTAAAACATATTGAGCATCTAGAGCATCTCTCCCAAGATAATTACCACCTGATAGTAATGGCTATAAAAGCTAAAAGTGGAATCAGTCTACATGTTTCGCAATAGGAATCAATTGAAGCATACATCAAAATGCAGACAGTAGTATTGTGAATAACCCTATACCTTCCAATTTGAAATCAGAAGCAAAAAAGGCTGCCAAAATATTAAGAGAATTCACAGAAATAACTTCCAGAAATGGACCTGATAAGATCATTCCTGCTCACGTAATTGCGAAGGCTAAAGGCCTTGCAATTCTGTCTGTGATCAAAGCCGGGTTCCTGGTGACTGCCAGAGGAGGCAGCGGGATTGTAGTGGCGCGCCTTCCAGATGGAAAATGGTCTGCACCCTCAGCCATTGGGATAGCTGGCCTTGGTGGAGGATTTGAAATAGGAATTGAGacacatttacagctacatattccctctgagcattgccctggctgccttccataagtgtggGTATCAGACTTGGTGATAATTCTGAATTATGACCGTGCTGTAGAAGCTTTTGCAAAAGGCGGAAATCTGACCCTCGGAGGGAACTTGACTGTGGCGGTTGGGCCCTTGGGAAGGAACTTGGAAGGAAACGTGGCCCTGAGAAGCTCCGCTGCCGTCTTCACGTACTGCAAGTCAAGGGGACTCTTTGCAGGCGTGTCTTTAGAAGGGAGCTGTTTGATTGAAAGGAAAGAAACTAATAGAAAATTTTATTGTCAAGATATCCGAGCTTATGACATTTTATTTGGAGATACACCGCGGCCTGCTCAAGCCGAAGATCTTTATGAAATTCTTGATTCCTTTACTGAAAAGTATGAAAATGAAGGACAACGAATCAATGCAAGAAAAGCAGCAAGGGAGCAGAGGAAGTCTTCTGCTAAAGAATTACCTCCAAAGCCATTGTCAAGACCACAGCAGTCATCTGCACCAGTCCAGCTGAACTCTGGCTCTCAAAGCAATTTGAATCAACCCATAGAAGTGACAGCGCTGTATTCATTTGAAGGACAGCAGCCTGGGGATTTGAATTTTCAAGCTGGAGACAGAATCACAGTTATATCAAAAACAGATTCACATTTTGATTGGTGGGAAGGAAAACTTCGAGGTCAAACTGGCATTTTTCCAGCCAACTACGTAACCATGAATTAAAGCGTATACTATTTTCTTCTTTGAGAATTACAAAAAAATTATTTCTACACTGACAGGATTTACTAGTTAAGCAATGtttaatataaattttaaaaaaCTTCTGTTCTACAAAATTTCCATTCCGTATGTAAAAGATTTTGTTTTTCTATATAAAAAGAGCTGACTGACATATCTTTAAATACTTTGTACTAACTTTATCACACTTACTGTGTCATAGAATATCATACAGTTTATACGCTCATAGTTCTCTTGTGAACACTTCAAACATCGCTAAGCATTTGATCTGGCCATGTATATGGTAGCTGTGTTTTAATTTGAGAATCTTGAGGGTAGAGCCACAAATTTCAATTCTTACATTTCCATTTGCAAAGTGACTAGAGAAAAAGAAATCAGCTTAAATGAGGTATTAAGTAATGTTTAGAGTCGTAGGTATTAACTAGAATATAAATCCTTAGAAATTGTCTTTATACCTTCAAAAATTATACTATGCATTTATCATAGAAATGTGATTACAAAGAAGTCTGACTACCATGTCTTTAAACATATGGCATCTCTCAACTTTTCTTCCTTATGGGGCTACATTTGTTCATTTCCAGCAGTAGCATAAACTTACGGTGACATGGTAGACTTGTCTCTAAATAAAATTTTTAAATGTTTA</dnaseq>| | sequence = <dnaseq>GAAAACTTTATTCTCAAGAGATTTCTCATTCCGCAGAAATAAGGATCTGGCATGTCAACACAAACATAGGAAGTTGAGGCAGTCAAAGGGAAATAACTGCTACCCTGACTCTGCTGAGAGCCTCACAAGTCCCTGTGCACGCCAGCTTGTTTGCCAaaaaagatgttgctggtccatttgacgaagaagtccagagcggcttgtgacttcagtctggctttgcagagcccaggtgctctctccaccttctgccaggttcccctatgaaggctttgctctcagactctccccttgtggagacaaaaatcccacagcaAGTGGAAACAGAAGTGCCTTGGAAAAAGTTATTCTGGCAGCTCCTATACAAGTCCCCCATCAGATGCTGGTATTGGACCAGCTTTGGTTATAAAGCCCTGCTGTGGCACCAAAAGGAATGTCGTCCTGATACAGCAGCCTCGGGTCACCCAATCCACTCCAGATACTATGGCTGCAGCATCAATGTAAGCAGACAAGTTGTGCTGCCTCTGAAATAAAGTAGATGAAATATTCAGCAGCAGAAAGAACAAGTTTCCACTCCAGTGAACTAATTCAAATGTATCCAGCATCTAGATATATGTATAAATGTAATTAAAACATATTGAGCATCTAGAGCATCTCTCCCAAGATAATTACCACCTGATAGTAATGGCTATAAAAGCTAAAAGTGGAATCAGTCTACATGTTTCGCAATAGGAATCAATTGAAGCATACATCAAAATGCAGACAGTAGTATTGTGAATAACCCTATACCTTCCAATTTGAAATCAGAAGCAAAAAAGGCTGCCAAAATATTAAGAGAATTCACAGAAATAACTTCCAGAAATGGACCTGATAAGATCATTCCTGCTCACGTAATTGCGAAGGCTAAAGGCCTTGCAATTCTGTCTGTGATCAAAGCCGGGTTCCTGGTGACTGCCAGAGGAGGCAGCGGGATTGTAGTGGCGCGCCTTCCAGATGGAAAATGGTCTGCACCCTCAGCCATTGGGATAGCTGGCCTTGGTGGAGGATTTGAAATAGGAATTGAGacacatttacagctacatattccctctgagcattgccctggctgccttccataagtgtggGTATCAGACTTGGTGATAATTCTGAATTATGACCGTGCTGTAGAAGCTTTTGCAAAAGGCGGAAATCTGACCCTCGGAGGGAACTTGACTGTGGCGGTTGGGCCCTTGGGAAGGAACTTGGAAGGAAACGTGGCCCTGAGAAGCTCCGCTGCCGTCTTCACGTACTGCAAGTCAAGGGGACTCTTTGCAGGCGTGTCTTTAGAAGGGAGCTGTTTGATTGAAAGGAAAGAAACTAATAGAAAATTTTATTGTCAAGATATCCGAGCTTATGACATTTTATTTGGAGATACACCGCGGCCTGCTCAAGCCGAAGATCTTTATGAAATTCTTGATTCCTTTACTGAAAAGTATGAAAATGAAGGACAACGAATCAATGCAAGAAAAGCAGCAAGGGAGCAGAGGAAGTCTTCTGCTAAAGAATTACCTCCAAAGCCATTGTCAAGACCACAGCAGTCATCTGCACCAGTCCAGCTGAACTCTGGCTCTCAAAGCAATTTGAATCAACCCATAGAAGTGACAGCGCTGTATTCATTTGAAGGACAGCAGCCTGGGGATTTGAATTTTCAAGCTGGAGACAGAATCACAGTTATATCAAAAACAGATTCACATTTTGATTGGTGGGAAGGAAAACTTCGAGGTCAAACTGGCATTTTTCCAGCCAACTACGTAACCATGAATTAAAGCGTATACTATTTTCTTCTTTGAGAATTACAAAAAAATTATTTCTACACTGACAGGATTTACTAGTTAAGCAATGtttaatataaattttaaaaaaCTTCTGTTCTACAAAATTTCCATTCCGTATGTAAAAGATTTTGTTTTTCTATATAAAAAGAGCTGACTGACATATCTTTAAATACTTTGTACTAACTTTATCACACTTACTGTGTCATAGAATATCATACAGTTTATACGCTCATAGTTCTCTTGTGAACACTTCAAACATCGCTAAGCATTTGATCTGGCCATGTATATGGTAGCTGTGTTTTAATTTGAGAATCTTGAGGGTAGAGCCACAAATTTCAATTCTTACATTTCCATTTGCAAAGTGACTAGAGAAAAAGAAATCAGCTTAAATGAGGTATTAAGTAATGTTTAGAGTCGTAGGTATTAACTAGAATATAAATCCTTAGAAATTGTCTTTATACCTTCAAAAATTATACTATGCATTTATCATAGAAATGTGATTACAAAGAAGTCTGACTACCATGTCTTTAAACATATGGCATCTCTCAACTTTTCTTCCTTATGGGGCTACATTTGTTCATTTCCAGCAGTAGCATAAACTTACGGTGACATGGTAGACTTGTCTCTAAATAAAATTTTTAAATGTTTA</dnaseq>| | ||
}} | }} | ||
− | [[Category:Sense]] | + | [[Category:Sense]][[Category:NONHSAG026753]] |
Revision as of 11:56, 13 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT068490 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2463 nt |
Genomic location |
chr2-:218153..262786 |
Exon number |
11 |
Exons |
218153..219001,229966..230044,231023..231191,233101..233229,234160..234272,243503..243562,247538..247602,249731..249844,253005..253115,260085..260702,262631..262786 |
Genome context |
|
Sequence |
000001 GAAAACTTTA TTCTCAAGAG ATTTCTCATT CCGCAGAAAT AAGGATCTGG CATGTCAACA CAAACATAGG AAGTTGAGGC 000080
000081 AGTCAAAGGG AAATAACTGC TACCCTGACT CTGCTGAGAG CCTCACAAGT CCCTGTGCAC GCCAGCTTGT TTGCCAaaaa 000160 000161 agatgttgct ggtccatttg acgaagaagt ccagagcggc ttgtgacttc agtctggctt tgcagagccc aggtgctctc 000240 000241 tccaccttct gccaggttcc cctatgaagg ctttgctctc agactctccc cttgtggaga caaaaatccc acagcaAGTG 000320 000321 GAAACAGAAG TGCCTTGGAA AAAGTTATTC TGGCAGCTCC TATACAAGTC CCCCATCAGA TGCTGGTATT GGACCAGCTT 000400 000401 TGGTTATAAA GCCCTGCTGT GGCACCAAAA GGAATGTCGT CCTGATACAG CAGCCTCGGG TCACCCAATC CACTCCAGAT 000480 000481 ACTATGGCTG CAGCATCAAT GTAAGCAGAC AAGTTGTGCT GCCTCTGAAA TAAAGTAGAT GAAATATTCA GCAGCAGAAA 000560 000561 GAACAAGTTT CCACTCCAGT GAACTAATTC AAATGTATCC AGCATCTAGA TATATGTATA AATGTAATTA AAACATATTG 000640 000641 AGCATCTAGA GCATCTCTCC CAAGATAATT ACCACCTGAT AGTAATGGCT ATAAAAGCTA AAAGTGGAAT CAGTCTACAT 000720 000721 GTTTCGCAAT AGGAATCAAT TGAAGCATAC ATCAAAATGC AGACAGTAGT ATTGTGAATA ACCCTATACC TTCCAATTTG 000800 000801 AAATCAGAAG CAAAAAAGGC TGCCAAAATA TTAAGAGAAT TCACAGAAAT AACTTCCAGA AATGGACCTG ATAAGATCAT 000880 000881 TCCTGCTCAC GTAATTGCGA AGGCTAAAGG CCTTGCAATT CTGTCTGTGA TCAAAGCCGG GTTCCTGGTG ACTGCCAGAG 000960 000961 GAGGCAGCGG GATTGTAGTG GCGCGCCTTC CAGATGGAAA ATGGTCTGCA CCCTCAGCCA TTGGGATAGC TGGCCTTGGT 001040 001041 GGAGGATTTG AAATAGGAAT TGAGacacat ttacagctac atattccctc tgagcattgc cctggctgcc ttccataagt 001120 001121 gtggGTATCA GACTTGGTGA TAATTCTGAA TTATGACCGT GCTGTAGAAG CTTTTGCAAA AGGCGGAAAT CTGACCCTCG 001200 001201 GAGGGAACTT GACTGTGGCG GTTGGGCCCT TGGGAAGGAA CTTGGAAGGA AACGTGGCCC TGAGAAGCTC CGCTGCCGTC 001280 001281 TTCACGTACT GCAAGTCAAG GGGACTCTTT GCAGGCGTGT CTTTAGAAGG GAGCTGTTTG ATTGAAAGGA AAGAAACTAA 001360 001361 TAGAAAATTT TATTGTCAAG ATATCCGAGC TTATGACATT TTATTTGGAG ATACACCGCG GCCTGCTCAA GCCGAAGATC 001440 001441 TTTATGAAAT TCTTGATTCC TTTACTGAAA AGTATGAAAA TGAAGGACAA CGAATCAATG CAAGAAAAGC AGCAAGGGAG 001520 001521 CAGAGGAAGT CTTCTGCTAA AGAATTACCT CCAAAGCCAT TGTCAAGACC ACAGCAGTCA TCTGCACCAG TCCAGCTGAA 001600 001601 CTCTGGCTCT CAAAGCAATT TGAATCAACC CATAGAAGTG ACAGCGCTGT ATTCATTTGA AGGACAGCAG CCTGGGGATT 001680 001681 TGAATTTTCA AGCTGGAGAC AGAATCACAG TTATATCAAA AACAGATTCA CATTTTGATT GGTGGGAAGG AAAACTTCGA 001760 001761 GGTCAAACTG GCATTTTTCC AGCCAACTAC GTAACCATGA ATTAAAGCGT ATACTATTTT CTTCTTTGAG AATTACAAAA 001840 001841 AAATTATTTC TACACTGACA GGATTTACTA GTTAAGCAAT Gtttaatata aattttaaaa aaCTTCTGTT CTACAAAATT 001920 001921 TCCATTCCGT ATGTAAAAGA TTTTGTTTTT CTATATAAAA AGAGCTGACT GACATATCTT TAAATACTTT GTACTAACTT 002000 002001 TATCACACTT ACTGTGTCAT AGAATATCAT ACAGTTTATA CGCTCATAGT TCTCTTGTGA ACACTTCAAA CATCGCTAAG 002080 002081 CATTTGATCT GGCCATGTAT ATGGTAGCTG TGTTTTAATT TGAGAATCTT GAGGGTAGAG CCACAAATTT CAATTCTTAC 002160 002161 ATTTCCATTT GCAAAGTGAC TAGAGAAAAA GAAATCAGCT TAAATGAGGT ATTAAGTAAT GTTTAGAGTC GTAGGTATTA 002240 002241 ACTAGAATAT AAATCCTTAG AAATTGTCTT TATACCTTCA AAAATTATAC TATGCATTTA TCATAGAAAT GTGATTACAA 002320 002321 AGAAGTCTGA CTACCATGTC TTTAAACATA TGGCATCTCT CAACTTTTCT TCCTTATGGG GCTACATTTG TTCATTTCCA 002400 002401 GCAGTAGCAT AAACTTACGG TGACATGGTA GACTTGTCTC TAAATAAAAT TTTTAAATGT TTA |
Predicted Small Protein
Name | NONHSAT068490_smProtein_263:532 |
Length | 90 |
Molecular weight | 10478.1199 |
Aromaticity | 0.134831460674 |
Instability index | 43.4224719101 |
Isoelectric point | 9.43780517578 |
Runs | 13 |
Runs residual | 0.00286406697511 |
Runs probability | 0.0381218322395 |
Amino acid sequence | MKALLSDSPLVETKIPQQVETEVPWKKLFWQLLYKSPIRCWYWTSFGYKALLWHQKECRP DTAASGHPIHSRYYGCSINVSRQVVLPLK |
Secondary structure | LEEEELLLLLLLLLLLLEEEEELLHHHHHHHHHHLLLLEEEEELLHHHHHHHHHHHHLLL LLLLLLLLLLLLEEEEEEEEEEEEEEELL |
PRMN | - |
PiMo | - |