Difference between revisions of "ENST00000480826.1"
| Line 42: | Line 42: | ||
sequence = <dnaseq>GTTCTTCTTGTTGGCCTACCTGAATACATGCTGAAGAATTGTCCTGAGGACCCTCTGTCAGTCTGGGTACAGATATGCTATAGTTCAGTGGCACATGGTATGAGGAGAGAGCTGCCTGCAGAGAGCGTGAGTCCTGATCCCTTGTCCCAGGGCAAAAGAGTTTCAGAGGAAGCCCAACTCCACTGGGCGGTTTTTCAGGACCTGGAGAGGAGAAGGAGATGAAGAGTGTCATTTATTGTTTCCTCAGTTATCTCAAGAGGTCCACGTCTATCTCTCTCATGAAGCGTAAGCACTCCTCTGACTCAGAACACTCAGTTAACTGAGGTGCTTTTTAAACAGAGATATGGATTTAGATCATGGAGCATATCCTCTCACCCGTGACCAGTAGCCAATATTGCAGAACAGCTGACAGAAATGTGGTAGGGATGCTGCGTGACTACCTGGGCATTACTCTACAGAGCTGGATCACAGAACCTAACTTCATTAGCATCATAGTCTAATGAGATAACTAGTGAGTGCAATAAATACTTGATGACTACGAATAAAGTCAGCAAAGAAAACAGA</dnaseq>| | sequence = <dnaseq>GTTCTTCTTGTTGGCCTACCTGAATACATGCTGAAGAATTGTCCTGAGGACCCTCTGTCAGTCTGGGTACAGATATGCTATAGTTCAGTGGCACATGGTATGAGGAGAGAGCTGCCTGCAGAGAGCGTGAGTCCTGATCCCTTGTCCCAGGGCAAAAGAGTTTCAGAGGAAGCCCAACTCCACTGGGCGGTTTTTCAGGACCTGGAGAGGAGAAGGAGATGAAGAGTGTCATTTATTGTTTCCTCAGTTATCTCAAGAGGTCCACGTCTATCTCTCTCATGAAGCGTAAGCACTCCTCTGACTCAGAACACTCAGTTAACTGAGGTGCTTTTTAAACAGAGATATGGATTTAGATCATGGAGCATATCCTCTCACCCGTGACCAGTAGCCAATATTGCAGAACAGCTGACAGAAATGTGGTAGGGATGCTGCGTGACTACCTGGGCATTACTCTACAGAGCTGGATCACAGAACCTAACTTCATTAGCATCATAGTCTAATGAGATAACTAGTGAGTGCAATAAATACTTGATGACTACGAATAAAGTCAGCAAAGAAAACAGA</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Antisense]][[Category:lnc-TRAT1-1]] | + | [[Category:Antisense]][[Category:lnc-TRAT1-1]][[Category:NONHSAG035698]] |
Revision as of 11:59, 13 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
| Transcript ID |
ENST00000480826.1 |
| Source |
Gencode19 |
| Same with |
lnc-TRAT1-1:1,NONHSAT091101 |
| Classification |
antisense |
| Length |
564 nt |
| Genomic location |
chr3+:108820303..108829189 |
| Exon number |
3 |
| Exons |
108820303..108820406,108828611..108828696,108828816..108829189 |
| Genome context |
|
| Sequence |
000001 GTTCTTCTTG TTGGCCTACC TGAATACATG CTGAAGAATT GTCCTGAGGA CCCTCTGTCA GTCTGGGTAC AGATATGCTA 000080
000081 TAGTTCAGTG GCACATGGTA TGAGGAGAGA GCTGCCTGCA GAGAGCGTGA GTCCTGATCC CTTGTCCCAG GGCAAAAGAG 000160 000161 TTTCAGAGGA AGCCCAACTC CACTGGGCGG TTTTTCAGGA CCTGGAGAGG AGAAGGAGAT GAAGAGTGTC ATTTATTGTT 000240 000241 TCCTCAGTTA TCTCAAGAGG TCCACGTCTA TCTCTCTCAT GAAGCGTAAG CACTCCTCTG ACTCAGAACA CTCAGTTAAC 000320 000321 TGAGGTGCTT TTTAAACAGA GATATGGATT TAGATCATGG AGCATATCCT CTCACCCGTG ACCAGTAGCC AATATTGCAG 000400 000401 AACAGCTGAC AGAAATGTGG TAGGGATGCT GCGTGACTAC CTGGGCATTA CTCTACAGAG CTGGATCACA GAACCTAACT 000480 000481 TCATTAGCAT CATAGTCTAA TGAGATAACT AGTGAGTGCA ATAAATACTT GATGACTACG AATAAAGTCA GCAAAGAAAA 000560 000561 CAGA |
Predicted Small Protein
| Name | ENST00000480826.1_smProtein_356:499 |
| Length | 48 |
| Molecular weight | 5369.1561 |
| Aromaticity | 0.0851063829787 |
| Instability index | 59.0382978723 |
| Isoelectric point | 5.46453857422 |
| Runs | 8 |
| Runs residual | 0.00393617021277 |
| Runs probability | 0.0361243596538 |
| Amino acid sequence | MEHILSPVTSSQYCRTADRNVVGMLRDYLGITLQSWITEPNFISIIV |
| Secondary structure | LEEEELLLLLLLLLLLLLLHHHHHHHHHHHHHEEEEEELLLEEEEEL |
| PRMN | - |
| PiMo | - |
