Difference between revisions of "ENST00000316786.1"
Line 42: | Line 42: | ||
sequence = <dnaseq>AGGCAAAGCCGGGAGAAACTGCTGAGACGAGGTGGCAGCGGGGACCACGTGAGATGGCGTATGTGGCCTTGAGCGATAAACCTCACCTGTCGGGGGAGGTGGGCGAGGAAGCCTGCAGCTCCTGGAACCCACCACTTTTCTCTCCCAGGCCCTTGCCCAGGCTGTGGCCTCTGCCTGGAACCCCTTTTCTTCCCATCCGAGCCCTTCCCTTCAGTGCCTCTTCCTCTGGGAAGTCCTCTCTGGTGCCCAGCCCGTCCTCTTCTGCCCACTCTGGGTTTCGCACCCCATGCTTAGGCCCTGATTGCCTGCTTTGCACACAGGGCTGTGAGCTCCATGAGGGCAGGAACCACATGGCTGTTCACAGCTGTGTTGCCAGGGCCTGGCCTGGAGACCCTCAGGAAGTGAGACATCTGAATCCTCTGCTCTGTGACCCTGGCAGCCAGGTAGAGCCATCTTGGCCATGGCACCCAGGCTTGGAGCAAGCAGCAGCCTCATGGGTGGGGAACCACGTTTCCCCAGCACATCGGCAGGCCCTAAGGGGACATTCGCTTGGCTCTGCCCTCAGAGCACTGATGCCCGGGGGACACTGCCCTTTGTGTGTCCCATGTAAGAGAGGATGCAACCTTAGAGGGGGCAGGGGTAAACATGGTCCCAGGCCCTGTTGTCCCCTCCTAAGAAAGTTCCCAGTTCTGCCTGTCCATCCCTGGCCTTTTCCCTGTGCTGTCTGGGACAGTGGGTGGAGCTGCCGCTGAGCGGTGGGACCTAGAAAACACATACTGACCTATAGGAGGCACTGCCCAGAGCTCCTAACTGGGGTGGGGTGCAAAGGAAAGGTGGGTGAGGGAAGCAGAGAGAAATCATATTAGTAGCTCACACGTCAACAGTCTAGCTGTGTGCCTGCCTCTCTCATGCACTTCATGGGGATTATTTCCTAGAATTCCCACAAGAGCCCCTTGCAGGTGGTGCGATTGTTAGCTATAATTTGAAGATGAGGAAACTGAGGCACAGAGTAGTTAAGCAATGCACCCAGGAGCCCACAGCTAGGGAGGACAGAGGCTGGATCCAGCCCAGTCCCCTGTCTCCTGGGGCCAGGCCCAGCGCTCCCACCTCTCTGATAAGGATAAAAAGGAGGGAGCGGGAAGGGAGATATTCCAGAGGCAACTACCATGAGACCTCCCGGCAGAGAGGCTTGAAAACATCTTTTGTGTGTGGTACGCAAACCATTTCCCCTTTGGTGTCTCTTTGAAAGATTTTGGGAAGATTTAAACTTTTTTTCAATGATTTGGGGATGTCAGACTGGTGTTTTTTTGAGGGTGACACCGTGATGAGACTGGCCCCCAAGGCAGCCCCGTTTTACTCAGGTTATGGTAATAGAACTTCTGCAGCCTCAAAAGCAGCTTCCGCCGACTGAGCGCTCACCCCGGGGTCCGTGCTGGACTCAGCCTTGACTCGGATGCCCACCCTGAGCCCCACCCGAGAAAGGGATTATTTCATCCCTGCATTATTTCCTTAGAGCTGATGGCAGAATCTGCTCATCTCCAAATTCGCTGTCTCCCCGTTAGGAGTGAGCTTGGTGAGGGCTCCAATCTGGTCTCCCCCGTTCATTGCTGAGTCCCTGGCACCCAGCATCAGCCCCGCATGGAGCAGCTAGTCAATAAAGCTTTGCTGGACACATTTCAGATGAAGAGACTGAGGGTCAGAGAGGTCACATGGCTTGCTTGGAAGAAACATCAGATTTGTCTGGCTCAAGAGTCCACTTCTGGCTCCCCCCTCACACAGTTGCTTAAGAGACCCCCAGCCCAAGACAGCCTCAGAGCCTGGGTCTTCCCCCCCTCCGCCCATTCTCAGGCCCTTATACTAAAACCAGAGAGGCCTCTGAACTGCTGTCTGCCCCCCCAACCTTTTCCTTGCTTATCTGGGAATCACGCAAAAGTTGGCCAGAGTTAGCTCAGTCTCAGAGAAGCTGCATTCTTCTAGAGTCACTCGGTTTTGCGTGACCTGATTCAAATTTTCCATCTTTGTCACTTTGATTCCCACTCTGAGAAGTTTTCTCAGTACATATAACCTTACTATGTGATGACTGGCCTGGGTATTCATATGTGCACTTGTTACCTGTTGCTTATCTCCTGGGGGACCCCTGGTTCAGAGGGGTTTAAGCAGGTGTCCTGGTGAGACCGGGGTTATAATCAGAGACTCTCAGGGTTAGAGCTTGGCCCTGCCACTGAGTGGCCTTGGGAGTCTCATTTGACCTCTCTGAACCTTGGATTCCTCACTTGTGAAATGGGGACAGGTTGAGTTCCTGCATGGAAAGTGTCTTGCTTGATGTCTCGCCAAAAGACCAAAACTGCCGTCACTCACTGCCGGAGAGGCCCTGCACGTGGATATTAGAGTTTGCTGGGTTTTGTTTGTCCTGAGCGAATGTCCGTCCATGTACAGGCTGATGGATTTTGTAGGTGCAAGGTCCCTAACGCAATCAATCTCTCTCCTCAAAAGACCATGAGCATGCCTGGACTCAGAGAGCACCGTGTGTGGGGGGCTGGCGTGGGCACGTGTCCGCAGCTGGGACTGGCTTCTAGGGTTCTGGGCTCAGGCAGGAGGGCGGGGTCCCAGGAGGTCATCTCTCTCTCCTTACCCTGGAGCCTTTGGAATTTGGTTTCCAAATGTCCTGAATTCCTGTTCATTAATATGTGGCTCAGTACAGTGCTTGTCCCGGCAGCAGGAGCTTGGTTGGTGTTAGTCTGCTGGGGAATGGGATAAAGCAGAGAAATGTCAAGCTTTCCCTTAAAAACAAAAAACAAAAGCAAACCCTCACATCTCCCACCAATAACACACCATTGTTATCCCTGTACTTAAGACATGTTGTTGCCGGGCATGGTAGCTCACACTTGTAATCCCGACACTTTGGGAGGCTGAGGCGGGTGGGTCACCTGAGGTTGGGAGTTTGAGACCAGCCTGACCAACATGGAGAAACCTCGTCTCTACTAAAAATACAAAATTAGCCGGGCATGGTGGTGCATGCCTGTAATCCCAGCTGCTGGGGAGGCTGAGGCAGGAGAATGGCTGGAACCCGGGAGGTGGAGGTTGTGGTGAGCTGAGATCGCACCATTGCCCTCCAGCCTGGGCAACAAGAGCAAAACTCTGTAAG</dnaseq>| | sequence = <dnaseq>AGGCAAAGCCGGGAGAAACTGCTGAGACGAGGTGGCAGCGGGGACCACGTGAGATGGCGTATGTGGCCTTGAGCGATAAACCTCACCTGTCGGGGGAGGTGGGCGAGGAAGCCTGCAGCTCCTGGAACCCACCACTTTTCTCTCCCAGGCCCTTGCCCAGGCTGTGGCCTCTGCCTGGAACCCCTTTTCTTCCCATCCGAGCCCTTCCCTTCAGTGCCTCTTCCTCTGGGAAGTCCTCTCTGGTGCCCAGCCCGTCCTCTTCTGCCCACTCTGGGTTTCGCACCCCATGCTTAGGCCCTGATTGCCTGCTTTGCACACAGGGCTGTGAGCTCCATGAGGGCAGGAACCACATGGCTGTTCACAGCTGTGTTGCCAGGGCCTGGCCTGGAGACCCTCAGGAAGTGAGACATCTGAATCCTCTGCTCTGTGACCCTGGCAGCCAGGTAGAGCCATCTTGGCCATGGCACCCAGGCTTGGAGCAAGCAGCAGCCTCATGGGTGGGGAACCACGTTTCCCCAGCACATCGGCAGGCCCTAAGGGGACATTCGCTTGGCTCTGCCCTCAGAGCACTGATGCCCGGGGGACACTGCCCTTTGTGTGTCCCATGTAAGAGAGGATGCAACCTTAGAGGGGGCAGGGGTAAACATGGTCCCAGGCCCTGTTGTCCCCTCCTAAGAAAGTTCCCAGTTCTGCCTGTCCATCCCTGGCCTTTTCCCTGTGCTGTCTGGGACAGTGGGTGGAGCTGCCGCTGAGCGGTGGGACCTAGAAAACACATACTGACCTATAGGAGGCACTGCCCAGAGCTCCTAACTGGGGTGGGGTGCAAAGGAAAGGTGGGTGAGGGAAGCAGAGAGAAATCATATTAGTAGCTCACACGTCAACAGTCTAGCTGTGTGCCTGCCTCTCTCATGCACTTCATGGGGATTATTTCCTAGAATTCCCACAAGAGCCCCTTGCAGGTGGTGCGATTGTTAGCTATAATTTGAAGATGAGGAAACTGAGGCACAGAGTAGTTAAGCAATGCACCCAGGAGCCCACAGCTAGGGAGGACAGAGGCTGGATCCAGCCCAGTCCCCTGTCTCCTGGGGCCAGGCCCAGCGCTCCCACCTCTCTGATAAGGATAAAAAGGAGGGAGCGGGAAGGGAGATATTCCAGAGGCAACTACCATGAGACCTCCCGGCAGAGAGGCTTGAAAACATCTTTTGTGTGTGGTACGCAAACCATTTCCCCTTTGGTGTCTCTTTGAAAGATTTTGGGAAGATTTAAACTTTTTTTCAATGATTTGGGGATGTCAGACTGGTGTTTTTTTGAGGGTGACACCGTGATGAGACTGGCCCCCAAGGCAGCCCCGTTTTACTCAGGTTATGGTAATAGAACTTCTGCAGCCTCAAAAGCAGCTTCCGCCGACTGAGCGCTCACCCCGGGGTCCGTGCTGGACTCAGCCTTGACTCGGATGCCCACCCTGAGCCCCACCCGAGAAAGGGATTATTTCATCCCTGCATTATTTCCTTAGAGCTGATGGCAGAATCTGCTCATCTCCAAATTCGCTGTCTCCCCGTTAGGAGTGAGCTTGGTGAGGGCTCCAATCTGGTCTCCCCCGTTCATTGCTGAGTCCCTGGCACCCAGCATCAGCCCCGCATGGAGCAGCTAGTCAATAAAGCTTTGCTGGACACATTTCAGATGAAGAGACTGAGGGTCAGAGAGGTCACATGGCTTGCTTGGAAGAAACATCAGATTTGTCTGGCTCAAGAGTCCACTTCTGGCTCCCCCCTCACACAGTTGCTTAAGAGACCCCCAGCCCAAGACAGCCTCAGAGCCTGGGTCTTCCCCCCCTCCGCCCATTCTCAGGCCCTTATACTAAAACCAGAGAGGCCTCTGAACTGCTGTCTGCCCCCCCAACCTTTTCCTTGCTTATCTGGGAATCACGCAAAAGTTGGCCAGAGTTAGCTCAGTCTCAGAGAAGCTGCATTCTTCTAGAGTCACTCGGTTTTGCGTGACCTGATTCAAATTTTCCATCTTTGTCACTTTGATTCCCACTCTGAGAAGTTTTCTCAGTACATATAACCTTACTATGTGATGACTGGCCTGGGTATTCATATGTGCACTTGTTACCTGTTGCTTATCTCCTGGGGGACCCCTGGTTCAGAGGGGTTTAAGCAGGTGTCCTGGTGAGACCGGGGTTATAATCAGAGACTCTCAGGGTTAGAGCTTGGCCCTGCCACTGAGTGGCCTTGGGAGTCTCATTTGACCTCTCTGAACCTTGGATTCCTCACTTGTGAAATGGGGACAGGTTGAGTTCCTGCATGGAAAGTGTCTTGCTTGATGTCTCGCCAAAAGACCAAAACTGCCGTCACTCACTGCCGGAGAGGCCCTGCACGTGGATATTAGAGTTTGCTGGGTTTTGTTTGTCCTGAGCGAATGTCCGTCCATGTACAGGCTGATGGATTTTGTAGGTGCAAGGTCCCTAACGCAATCAATCTCTCTCCTCAAAAGACCATGAGCATGCCTGGACTCAGAGAGCACCGTGTGTGGGGGGCTGGCGTGGGCACGTGTCCGCAGCTGGGACTGGCTTCTAGGGTTCTGGGCTCAGGCAGGAGGGCGGGGTCCCAGGAGGTCATCTCTCTCTCCTTACCCTGGAGCCTTTGGAATTTGGTTTCCAAATGTCCTGAATTCCTGTTCATTAATATGTGGCTCAGTACAGTGCTTGTCCCGGCAGCAGGAGCTTGGTTGGTGTTAGTCTGCTGGGGAATGGGATAAAGCAGAGAAATGTCAAGCTTTCCCTTAAAAACAAAAAACAAAAGCAAACCCTCACATCTCCCACCAATAACACACCATTGTTATCCCTGTACTTAAGACATGTTGTTGCCGGGCATGGTAGCTCACACTTGTAATCCCGACACTTTGGGAGGCTGAGGCGGGTGGGTCACCTGAGGTTGGGAGTTTGAGACCAGCCTGACCAACATGGAGAAACCTCGTCTCTACTAAAAATACAAAATTAGCCGGGCATGGTGGTGCATGCCTGTAATCCCAGCTGCTGGGGAGGCTGAGGCAGGAGAATGGCTGGAACCCGGGAGGTGGAGGTTGTGGTGAGCTGAGATCGCACCATTGCCCTCCAGCCTGGGCAACAAGAGCAAAACTCTGTAAG</dnaseq>| | ||
}} | }} | ||
− | [[Category:Sense]][[Category:ENSG00000179082.3]] | + | [[Category:Sense]][[Category:ENSG00000179082.3]][[Category:lnc-PPP2R4-4]] |
Revision as of 12:01, 13 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000316786.1 |
Source |
Gencode19 |
Same with |
lnc-PPP2R4-4:1 |
Classification |
sense |
Length |
3145 nt |
Genomic location |
chr9+:132083295..132087184 |
Exon number |
2 |
Exons |
132083295..132083325,132084071..132087184 |
Genome context |
|
Sequence |
000001 AGGCAAAGCC GGGAGAAACT GCTGAGACGA GGTGGCAGCG GGGACCACGT GAGATGGCGT ATGTGGCCTT GAGCGATAAA 000080
000081 CCTCACCTGT CGGGGGAGGT GGGCGAGGAA GCCTGCAGCT CCTGGAACCC ACCACTTTTC TCTCCCAGGC CCTTGCCCAG 000160 000161 GCTGTGGCCT CTGCCTGGAA CCCCTTTTCT TCCCATCCGA GCCCTTCCCT TCAGTGCCTC TTCCTCTGGG AAGTCCTCTC 000240 000241 TGGTGCCCAG CCCGTCCTCT TCTGCCCACT CTGGGTTTCG CACCCCATGC TTAGGCCCTG ATTGCCTGCT TTGCACACAG 000320 000321 GGCTGTGAGC TCCATGAGGG CAGGAACCAC ATGGCTGTTC ACAGCTGTGT TGCCAGGGCC TGGCCTGGAG ACCCTCAGGA 000400 000401 AGTGAGACAT CTGAATCCTC TGCTCTGTGA CCCTGGCAGC CAGGTAGAGC CATCTTGGCC ATGGCACCCA GGCTTGGAGC 000480 000481 AAGCAGCAGC CTCATGGGTG GGGAACCACG TTTCCCCAGC ACATCGGCAG GCCCTAAGGG GACATTCGCT TGGCTCTGCC 000560 000561 CTCAGAGCAC TGATGCCCGG GGGACACTGC CCTTTGTGTG TCCCATGTAA GAGAGGATGC AACCTTAGAG GGGGCAGGGG 000640 000641 TAAACATGGT CCCAGGCCCT GTTGTCCCCT CCTAAGAAAG TTCCCAGTTC TGCCTGTCCA TCCCTGGCCT TTTCCCTGTG 000720 000721 CTGTCTGGGA CAGTGGGTGG AGCTGCCGCT GAGCGGTGGG ACCTAGAAAA CACATACTGA CCTATAGGAG GCACTGCCCA 000800 000801 GAGCTCCTAA CTGGGGTGGG GTGCAAAGGA AAGGTGGGTG AGGGAAGCAG AGAGAAATCA TATTAGTAGC TCACACGTCA 000880 000881 ACAGTCTAGC TGTGTGCCTG CCTCTCTCAT GCACTTCATG GGGATTATTT CCTAGAATTC CCACAAGAGC CCCTTGCAGG 000960 000961 TGGTGCGATT GTTAGCTATA ATTTGAAGAT GAGGAAACTG AGGCACAGAG TAGTTAAGCA ATGCACCCAG GAGCCCACAG 001040 001041 CTAGGGAGGA CAGAGGCTGG ATCCAGCCCA GTCCCCTGTC TCCTGGGGCC AGGCCCAGCG CTCCCACCTC TCTGATAAGG 001120 001121 ATAAAAAGGA GGGAGCGGGA AGGGAGATAT TCCAGAGGCA ACTACCATGA GACCTCCCGG CAGAGAGGCT TGAAAACATC 001200 001201 TTTTGTGTGT GGTACGCAAA CCATTTCCCC TTTGGTGTCT CTTTGAAAGA TTTTGGGAAG ATTTAAACTT TTTTTCAATG 001280 001281 ATTTGGGGAT GTCAGACTGG TGTTTTTTTG AGGGTGACAC CGTGATGAGA CTGGCCCCCA AGGCAGCCCC GTTTTACTCA 001360 001361 GGTTATGGTA ATAGAACTTC TGCAGCCTCA AAAGCAGCTT CCGCCGACTG AGCGCTCACC CCGGGGTCCG TGCTGGACTC 001440 001441 AGCCTTGACT CGGATGCCCA CCCTGAGCCC CACCCGAGAA AGGGATTATT TCATCCCTGC ATTATTTCCT TAGAGCTGAT 001520 001521 GGCAGAATCT GCTCATCTCC AAATTCGCTG TCTCCCCGTT AGGAGTGAGC TTGGTGAGGG CTCCAATCTG GTCTCCCCCG 001600 001601 TTCATTGCTG AGTCCCTGGC ACCCAGCATC AGCCCCGCAT GGAGCAGCTA GTCAATAAAG CTTTGCTGGA CACATTTCAG 001680 001681 ATGAAGAGAC TGAGGGTCAG AGAGGTCACA TGGCTTGCTT GGAAGAAACA TCAGATTTGT CTGGCTCAAG AGTCCACTTC 001760 001761 TGGCTCCCCC CTCACACAGT TGCTTAAGAG ACCCCCAGCC CAAGACAGCC TCAGAGCCTG GGTCTTCCCC CCCTCCGCCC 001840 001841 ATTCTCAGGC CCTTATACTA AAACCAGAGA GGCCTCTGAA CTGCTGTCTG CCCCCCCAAC CTTTTCCTTG CTTATCTGGG 001920 001921 AATCACGCAA AAGTTGGCCA GAGTTAGCTC AGTCTCAGAG AAGCTGCATT CTTCTAGAGT CACTCGGTTT TGCGTGACCT 002000 002001 GATTCAAATT TTCCATCTTT GTCACTTTGA TTCCCACTCT GAGAAGTTTT CTCAGTACAT ATAACCTTAC TATGTGATGA 002080 002081 CTGGCCTGGG TATTCATATG TGCACTTGTT ACCTGTTGCT TATCTCCTGG GGGACCCCTG GTTCAGAGGG GTTTAAGCAG 002160 002161 GTGTCCTGGT GAGACCGGGG TTATAATCAG AGACTCTCAG GGTTAGAGCT TGGCCCTGCC ACTGAGTGGC CTTGGGAGTC 002240 002241 TCATTTGACC TCTCTGAACC TTGGATTCCT CACTTGTGAA ATGGGGACAG GTTGAGTTCC TGCATGGAAA GTGTCTTGCT 002320 002321 TGATGTCTCG CCAAAAGACC AAAACTGCCG TCACTCACTG CCGGAGAGGC CCTGCACGTG GATATTAGAG TTTGCTGGGT 002400 002401 TTTGTTTGTC CTGAGCGAAT GTCCGTCCAT GTACAGGCTG ATGGATTTTG TAGGTGCAAG GTCCCTAACG CAATCAATCT 002480 002481 CTCTCCTCAA AAGACCATGA GCATGCCTGG ACTCAGAGAG CACCGTGTGT GGGGGGCTGG CGTGGGCACG TGTCCGCAGC 002560 002561 TGGGACTGGC TTCTAGGGTT CTGGGCTCAG GCAGGAGGGC GGGGTCCCAG GAGGTCATCT CTCTCTCCTT ACCCTGGAGC 002640 002641 CTTTGGAATT TGGTTTCCAA ATGTCCTGAA TTCCTGTTCA TTAATATGTG GCTCAGTACA GTGCTTGTCC CGGCAGCAGG 002720 002721 AGCTTGGTTG GTGTTAGTCT GCTGGGGAAT GGGATAAAGC AGAGAAATGT CAAGCTTTCC CTTAAAAACA AAAAACAAAA 002800 002801 GCAAACCCTC ACATCTCCCA CCAATAACAC ACCATTGTTA TCCCTGTACT TAAGACATGT TGTTGCCGGG CATGGTAGCT 002880 002881 CACACTTGTA ATCCCGACAC TTTGGGAGGC TGAGGCGGGT GGGTCACCTG AGGTTGGGAG TTTGAGACCA GCCTGACCAA 002960 002961 CATGGAGAAA CCTCGTCTCT ACTAAAAATA CAAAATTAGC CGGGCATGGT GGTGCATGCC TGTAATCCCA GCTGCTGGGG 003040 003041 AGGCTGAGGC AGGAGAATGG CTGGAACCCG GGAGGTGGAG GTTGTGGTGA GCTGAGATCG CACCATTGCC CTCCAGCCTG 003120 003121 GGCAACAAGA GCAAAACTCT GTAAG |