Difference between revisions of "NONHSAT068976"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>GACACTGAGCTAGGGTGGCCATGCCTCGCCCTGACCTCAGGCCCATGGGCCCCGTGGATGAGCAGGGGCATGCAGGACAGGCCTGCAGGGCAGGGCAGGGCAGTAGGGTTTTCATCGGCAAAGCCCCGTGATCCTCACAGTAGCCCCAGGAGTTGGACCAGCCTGGACCCTTACCCCATTTTACAGCCAGAAACAAGATAAGCGCCTTGCAGGGGCCCTTAACTGACTGCTGGGTTCGATGGTTCAAAGAGAAAAAGCACGTGATAACTTTGAAGGAGGCTGCCTGGCTGAGCTGATCGGATCACCTAGAGACTGGAAATGCTTTCTGGTCTGAAGTCACCTGCCCTATCTGGACATTCCATAGACTACCACTTTTACCCACGACTTCGATGTGGCATGCTCATTGGACCAGATAAGCAAGCAGTGGCAAGTGGATTGGAGGTCTTGGAATATGAAGGCCTGGCCCTCGTCTCAGCTTGGAATAAATCTGAAGGCCCATCACAGCTTCAGAGATGCTTGGAGAAGGCTGAGGTCTCCCCTGTAACCTTATGAGAACCTTGAGTTGTTGAACTCATTAATTCTTTGGGACCATCTTCCTGATGTTCAAGTTTGTGAAACAGGCTTTCCCTTTAAGATTTGTTTTCCTCAAAATACAAGACTATTGATGCTTCAGTTTTGAAGTGGATTCTGCACTCAAGAAATGTACCATTGAAGAATGGGACTGGTAGGAAGGGAAAAAAACTAAAAGGAAACGCATTTTCGAGTTGCACATCATGATCAGGCACAGAGTCCAGATACACTTGGAGTAGCAAGCATCCATCCTTGTGGAGACGCACATGAACCAGGACTCTCTGCACCCACCCCTCTCAAGTTTTATTTTCCGACGGCTGTAATGTTCCAGGACACCTGCCATCATGGAGGGTTATCCAGCACCTGGAGGATACCTGCTACCTATTTTGTGAACAATTTGGCATGAGGAGAGAAAGGAACCTGAAGTTTTTAGCAAGGAAGCTTCCTGTCTCCAAGGGGATTTTTTCCCACAGAAATATATTGCTGATTGGATGTTGCCTCTCTAATTTTGGAGACCATATGTTCTAGGTATTCCGGGAAAAATCTGCATTTCAAATCCTGGATCCATTGTTCCCAAAAGCCATGTAAGAATCCCAACAGAGATAGGTCCCTCTCATGGATATGTCCTATGTCCCAGGGATACCGCTCAAAGCATTTTGTGGCTGAAGACATTTAATCTTTCATAGAAACTCCTGAAGAAGATGTTATTGCTATTATAATCATATGTATTTGGAAATGAAGACTTTGAAAGGTTCTAACTTATTCAACATTTCTCAACCAGCATGTGGCAAAGTTCTGAAAGTCTGTTATTCTAACCAACATCCTACCTTGAGGAGCAATGATGTTCACCTGTCTGGTTGCCACAACTCACGTCCTTCTGTGGGCAGCAGAGTTCCAAGACGTTCCCCAAGATCTCATTTTCTGGAGGTGCATGTCTCCCGTGACCCCCTCTTTGGATTGCCCGCAGAGCCCGTGAAGATGGTGTTATCACTCCTGTGATTACTTTACTGATCAGGTGACTTTGAGTCAATCAAAAGGTAGATTATCCAGGTGTGCCTGATTTGATCAGGTGGTCCCTTAAGGAGGCTTAAAATGACCCTTTCTGAAGTAGAGTAATTGGAAAAGTAAGAGGGTCTATGGGTGGGGTCACCTGGCAAGGAACTGAACTCAGCCTCCATGAGCTCTGGCCACCAGCTGACCTTTAGCAAGAAAGCAAATCTTTCTTTGGTCAGTCTCCACAACAGGACGAAGCTGGCTGAGCCCTTGCCTTTGGCCCTGTGAGATGCTGACCCGAGTATCCAGCGAACACGTGCCAGAGTCCTGACCCATGGAAACTGAGATGATGAGTCTGTGTTGCTTTAAGCCACTGTGTCTACAGTAATTGGTTAGACAGCAATAGAAAACTAATAAACCTCCCTCTTTTTCATTT</dnaseq>| | sequence = <dnaseq>GACACTGAGCTAGGGTGGCCATGCCTCGCCCTGACCTCAGGCCCATGGGCCCCGTGGATGAGCAGGGGCATGCAGGACAGGCCTGCAGGGCAGGGCAGGGCAGTAGGGTTTTCATCGGCAAAGCCCCGTGATCCTCACAGTAGCCCCAGGAGTTGGACCAGCCTGGACCCTTACCCCATTTTACAGCCAGAAACAAGATAAGCGCCTTGCAGGGGCCCTTAACTGACTGCTGGGTTCGATGGTTCAAAGAGAAAAAGCACGTGATAACTTTGAAGGAGGCTGCCTGGCTGAGCTGATCGGATCACCTAGAGACTGGAAATGCTTTCTGGTCTGAAGTCACCTGCCCTATCTGGACATTCCATAGACTACCACTTTTACCCACGACTTCGATGTGGCATGCTCATTGGACCAGATAAGCAAGCAGTGGCAAGTGGATTGGAGGTCTTGGAATATGAAGGCCTGGCCCTCGTCTCAGCTTGGAATAAATCTGAAGGCCCATCACAGCTTCAGAGATGCTTGGAGAAGGCTGAGGTCTCCCCTGTAACCTTATGAGAACCTTGAGTTGTTGAACTCATTAATTCTTTGGGACCATCTTCCTGATGTTCAAGTTTGTGAAACAGGCTTTCCCTTTAAGATTTGTTTTCCTCAAAATACAAGACTATTGATGCTTCAGTTTTGAAGTGGATTCTGCACTCAAGAAATGTACCATTGAAGAATGGGACTGGTAGGAAGGGAAAAAAACTAAAAGGAAACGCATTTTCGAGTTGCACATCATGATCAGGCACAGAGTCCAGATACACTTGGAGTAGCAAGCATCCATCCTTGTGGAGACGCACATGAACCAGGACTCTCTGCACCCACCCCTCTCAAGTTTTATTTTCCGACGGCTGTAATGTTCCAGGACACCTGCCATCATGGAGGGTTATCCAGCACCTGGAGGATACCTGCTACCTATTTTGTGAACAATTTGGCATGAGGAGAGAAAGGAACCTGAAGTTTTTAGCAAGGAAGCTTCCTGTCTCCAAGGGGATTTTTTCCCACAGAAATATATTGCTGATTGGATGTTGCCTCTCTAATTTTGGAGACCATATGTTCTAGGTATTCCGGGAAAAATCTGCATTTCAAATCCTGGATCCATTGTTCCCAAAAGCCATGTAAGAATCCCAACAGAGATAGGTCCCTCTCATGGATATGTCCTATGTCCCAGGGATACCGCTCAAAGCATTTTGTGGCTGAAGACATTTAATCTTTCATAGAAACTCCTGAAGAAGATGTTATTGCTATTATAATCATATGTATTTGGAAATGAAGACTTTGAAAGGTTCTAACTTATTCAACATTTCTCAACCAGCATGTGGCAAAGTTCTGAAAGTCTGTTATTCTAACCAACATCCTACCTTGAGGAGCAATGATGTTCACCTGTCTGGTTGCCACAACTCACGTCCTTCTGTGGGCAGCAGAGTTCCAAGACGTTCCCCAAGATCTCATTTTCTGGAGGTGCATGTCTCCCGTGACCCCCTCTTTGGATTGCCCGCAGAGCCCGTGAAGATGGTGTTATCACTCCTGTGATTACTTTACTGATCAGGTGACTTTGAGTCAATCAAAAGGTAGATTATCCAGGTGTGCCTGATTTGATCAGGTGGTCCCTTAAGGAGGCTTAAAATGACCCTTTCTGAAGTAGAGTAATTGGAAAAGTAAGAGGGTCTATGGGTGGGGTCACCTGGCAAGGAACTGAACTCAGCCTCCATGAGCTCTGGCCACCAGCTGACCTTTAGCAAGAAAGCAAATCTTTCTTTGGTCAGTCTCCACAACAGGACGAAGCTGGCTGAGCCCTTGCCTTTGGCCCTGTGAGATGCTGACCCGAGTATCCAGCGAACACGTGCCAGAGTCCTGACCCATGGAAACTGAGATGATGAGTCTGTGTTGCTTTAAGCCACTGTGTCTACAGTAATTGGTTAGACAGCAATAGAAAACTAATAAACCTCCCTCTTTTTCATTT</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG026925]] |
Revision as of 12:04, 13 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT068976 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1999 nt |
Genomic location |
chr2-:8147901..8468549 |
Exon number |
9 |
Exons |
8147901..8148889,8200478..8200535,8427468..8427688,8434742..8434816,8434904..8435009,8436970..8437073,8439806..8439923,8464672..8464814,8468364..8468549 |
Genome context |
|
Sequence |
000001 GACACTGAGC TAGGGTGGCC ATGCCTCGCC CTGACCTCAG GCCCATGGGC CCCGTGGATG AGCAGGGGCA TGCAGGACAG 000080
000081 GCCTGCAGGG CAGGGCAGGG CAGTAGGGTT TTCATCGGCA AAGCCCCGTG ATCCTCACAG TAGCCCCAGG AGTTGGACCA 000160 000161 GCCTGGACCC TTACCCCATT TTACAGCCAG AAACAAGATA AGCGCCTTGC AGGGGCCCTT AACTGACTGC TGGGTTCGAT 000240 000241 GGTTCAAAGA GAAAAAGCAC GTGATAACTT TGAAGGAGGC TGCCTGGCTG AGCTGATCGG ATCACCTAGA GACTGGAAAT 000320 000321 GCTTTCTGGT CTGAAGTCAC CTGCCCTATC TGGACATTCC ATAGACTACC ACTTTTACCC ACGACTTCGA TGTGGCATGC 000400 000401 TCATTGGACC AGATAAGCAA GCAGTGGCAA GTGGATTGGA GGTCTTGGAA TATGAAGGCC TGGCCCTCGT CTCAGCTTGG 000480 000481 AATAAATCTG AAGGCCCATC ACAGCTTCAG AGATGCTTGG AGAAGGCTGA GGTCTCCCCT GTAACCTTAT GAGAACCTTG 000560 000561 AGTTGTTGAA CTCATTAATT CTTTGGGACC ATCTTCCTGA TGTTCAAGTT TGTGAAACAG GCTTTCCCTT TAAGATTTGT 000640 000641 TTTCCTCAAA ATACAAGACT ATTGATGCTT CAGTTTTGAA GTGGATTCTG CACTCAAGAA ATGTACCATT GAAGAATGGG 000720 000721 ACTGGTAGGA AGGGAAAAAA ACTAAAAGGA AACGCATTTT CGAGTTGCAC ATCATGATCA GGCACAGAGT CCAGATACAC 000800 000801 TTGGAGTAGC AAGCATCCAT CCTTGTGGAG ACGCACATGA ACCAGGACTC TCTGCACCCA CCCCTCTCAA GTTTTATTTT 000880 000881 CCGACGGCTG TAATGTTCCA GGACACCTGC CATCATGGAG GGTTATCCAG CACCTGGAGG ATACCTGCTA CCTATTTTGT 000960 000961 GAACAATTTG GCATGAGGAG AGAAAGGAAC CTGAAGTTTT TAGCAAGGAA GCTTCCTGTC TCCAAGGGGA TTTTTTCCCA 001040 001041 CAGAAATATA TTGCTGATTG GATGTTGCCT CTCTAATTTT GGAGACCATA TGTTCTAGGT ATTCCGGGAA AAATCTGCAT 001120 001121 TTCAAATCCT GGATCCATTG TTCCCAAAAG CCATGTAAGA ATCCCAACAG AGATAGGTCC CTCTCATGGA TATGTCCTAT 001200 001201 GTCCCAGGGA TACCGCTCAA AGCATTTTGT GGCTGAAGAC ATTTAATCTT TCATAGAAAC TCCTGAAGAA GATGTTATTG 001280 001281 CTATTATAAT CATATGTATT TGGAAATGAA GACTTTGAAA GGTTCTAACT TATTCAACAT TTCTCAACCA GCATGTGGCA 001360 001361 AAGTTCTGAA AGTCTGTTAT TCTAACCAAC ATCCTACCTT GAGGAGCAAT GATGTTCACC TGTCTGGTTG CCACAACTCA 001440 001441 CGTCCTTCTG TGGGCAGCAG AGTTCCAAGA CGTTCCCCAA GATCTCATTT TCTGGAGGTG CATGTCTCCC GTGACCCCCT 001520 001521 CTTTGGATTG CCCGCAGAGC CCGTGAAGAT GGTGTTATCA CTCCTGTGAT TACTTTACTG ATCAGGTGAC TTTGAGTCAA 001600 001601 TCAAAAGGTA GATTATCCAG GTGTGCCTGA TTTGATCAGG TGGTCCCTTA AGGAGGCTTA AAATGACCCT TTCTGAAGTA 001680 001681 GAGTAATTGG AAAAGTAAGA GGGTCTATGG GTGGGGTCAC CTGGCAAGGA ACTGAACTCA GCCTCCATGA GCTCTGGCCA 001760 001761 CCAGCTGACC TTTAGCAAGA AAGCAAATCT TTCTTTGGTC AGTCTCCACA ACAGGACGAA GCTGGCTGAG CCCTTGCCTT 001840 001841 TGGCCCTGTG AGATGCTGAC CCGAGTATCC AGCGAACACG TGCCAGAGTC CTGACCCATG GAAACTGAGA TGATGAGTCT 001920 001921 GTGTTGCTTT AAGCCACTGT GTCTACAGTA ATTGGTTAGA CAGCAATAGA AAACTAATAA ACCTCCCTCT TTTTCATTT |
Predicted Small Protein
Name | NONHSAT068976_smProtein_20:130 |
Length | 37 |
Molecular weight | 3788.3047 |
Aromaticity | 0.0277777777778 |
Instability index | 58.7666666667 |
Isoelectric point | 9.48956298828 |
Runs | 5 |
Runs residual | 0.0415695415695 |
Runs probability | 0.0475357710653 |
Amino acid sequence | MPRPDLRPMGPVDEQGHAGQACRAGQGSRVFIGKAP |
Secondary structure | LLLLLLLLLLLLLLLLLHHHHHHLLLLLEEEEEELL |
PRMN | - |
PiMo | - |