Difference between revisions of "NONHSAT039199"

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(Created page with "Please input one-sentence summary here. ==Annotated Information== ===Transcriptomic Nomeclature=== Please input transcriptomic nomeclature information here. ===Functio...")
 
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sequence = <dnaseq>AGATGTACATTAATAATGAGCTAGAAGGGAGAGGTTTTATTTGGGATTCATCAATTTCCTGGAGGTTCATGTGGAACATCTATGGCACAGGGGAGTACTGACGTCTGGTCCCTAGCCCTGCTCCCCATGGTGAAGAGCCTTACACACTGTGTGGACACACCGCCCCCAACATCCATGCTTAATCCACATCCCCTTCAAACAACCACTCTGGGCAGACCCTCAGGAAGAGGCCTGCAAAGGGAAAACTCTTGTCGGTCCAGAGAAGAAAGAATTGCCAAAATTAAATAAAAAGTCAAGATTCCATTACCTGATGATTTGTGTATTTCACGTTGTTTGCAACAAACCTGGAAGTCATCCCAAGTTCCTTTCTTTTTCTTACCCTCCACATCCAAGCTGTCAACAAATCTCGACTCTGACCACCTCTCAGCACCTCCACTGTGTCACCCAGTGCAAACCTCCACCACCATCTCAGCCTCTTACCCAGCTCCAGGATTCTGCCTTTGCCCCCATCAATCTACTTCAGGTCTCTTCTCCACCCAATAAATAAGTCCAGCAATGATCCTTGTAAAATGTACATCAGGAGGGGCCTTCTCATCTCACCTATGATAGGTATGGAGTTTTTTCTTTTTTCCATTTCACCTGTGATGTATGTTTGTGACCTCCAATATGTAACCACTTACTATGTTGCTTTTAAAATGATTTTTAAAGGTTTGTTTACAACCATAGCCACTATTTGCAATTATGAGTGTATAGCACTAAGCATGAGAACTAGATCTGTGAAATTTTTTGCCAGTTTCATTAGGTGACCTCTGTAAGCATCAAAACCTGGCATTGATTGAGGTTGTTTCAGGCTCAACTAGTACTGTTCAAAATAAAGTAACTGAAAGCAAGTCTGGTGGTAGAAGGTACTTTATAAGCTAACTAATGCTTTTCAAAGGGATATATATTGAAGGAAAGGCTCGTTTTATATTACATCCTATAAGGCAGTGCTTCTTAAACTCTCTGTGGAAAAGAACCACTTTTTATAAATTTCCAGTCTGTTGCAAACCGATACTTTGTAAAAATTAATAAAAGTGAATTACTAGAAAAATGAAATTTTTGAAAAAGACATATAAAATAAAAGTTGTAATTTTTAGCAAACAGGAAGTTATATTGCAAAAATTACTGGGGTATAGGAAAAAAGATACAAAAATTGTTCGTGTTTGTTCATTGAAAGTATGCGTGTAAGCAATTAATAGGCTATTGCACTTGTAAGTTTTCTTCATTTTAAGGGAAAATGGAATTCCCATATTAAATGTCTATTTGTACACTTTGAACACAATGTGGATAAATATTTAAAGTTTTTAATGTGACAAATGGGATTGCTTCCTACTTGATACTTTACCTAATCTAGGTAAAATTGCCAATAAGGCTACTTGTAGGGAATAAGGTATATCTAAATAATTTCTACGCTTTATTTTAATAATGATACAAAAGAAACCAGTCTCACAATGGAATGGAGGGAGAGATTTTAGAGCAATTTTCAGTGAGCTCAGTTTATTCATTTTAAAATTTTATCTAAGATGGAGCCAGAGCCACTATGCTTTCAAAGTCTTCCAATCCCTCAACAGACCTGAGTGCCAGCAATATATCCTGTAAATTATAATTAAATATAATTATCTTTTGGTGAAATAAATGGATCCTAGATCCATGGATTTTTTAGACATAGATCTTCTTTTGATGG</dnaseq>|
 
sequence = <dnaseq>AGATGTACATTAATAATGAGCTAGAAGGGAGAGGTTTTATTTGGGATTCATCAATTTCCTGGAGGTTCATGTGGAACATCTATGGCACAGGGGAGTACTGACGTCTGGTCCCTAGCCCTGCTCCCCATGGTGAAGAGCCTTACACACTGTGTGGACACACCGCCCCCAACATCCATGCTTAATCCACATCCCCTTCAAACAACCACTCTGGGCAGACCCTCAGGAAGAGGCCTGCAAAGGGAAAACTCTTGTCGGTCCAGAGAAGAAAGAATTGCCAAAATTAAATAAAAAGTCAAGATTCCATTACCTGATGATTTGTGTATTTCACGTTGTTTGCAACAAACCTGGAAGTCATCCCAAGTTCCTTTCTTTTTCTTACCCTCCACATCCAAGCTGTCAACAAATCTCGACTCTGACCACCTCTCAGCACCTCCACTGTGTCACCCAGTGCAAACCTCCACCACCATCTCAGCCTCTTACCCAGCTCCAGGATTCTGCCTTTGCCCCCATCAATCTACTTCAGGTCTCTTCTCCACCCAATAAATAAGTCCAGCAATGATCCTTGTAAAATGTACATCAGGAGGGGCCTTCTCATCTCACCTATGATAGGTATGGAGTTTTTTCTTTTTTCCATTTCACCTGTGATGTATGTTTGTGACCTCCAATATGTAACCACTTACTATGTTGCTTTTAAAATGATTTTTAAAGGTTTGTTTACAACCATAGCCACTATTTGCAATTATGAGTGTATAGCACTAAGCATGAGAACTAGATCTGTGAAATTTTTTGCCAGTTTCATTAGGTGACCTCTGTAAGCATCAAAACCTGGCATTGATTGAGGTTGTTTCAGGCTCAACTAGTACTGTTCAAAATAAAGTAACTGAAAGCAAGTCTGGTGGTAGAAGGTACTTTATAAGCTAACTAATGCTTTTCAAAGGGATATATATTGAAGGAAAGGCTCGTTTTATATTACATCCTATAAGGCAGTGCTTCTTAAACTCTCTGTGGAAAAGAACCACTTTTTATAAATTTCCAGTCTGTTGCAAACCGATACTTTGTAAAAATTAATAAAAGTGAATTACTAGAAAAATGAAATTTTTGAAAAAGACATATAAAATAAAAGTTGTAATTTTTAGCAAACAGGAAGTTATATTGCAAAAATTACTGGGGTATAGGAAAAAAGATACAAAAATTGTTCGTGTTTGTTCATTGAAAGTATGCGTGTAAGCAATTAATAGGCTATTGCACTTGTAAGTTTTCTTCATTTTAAGGGAAAATGGAATTCCCATATTAAATGTCTATTTGTACACTTTGAACACAATGTGGATAAATATTTAAAGTTTTTAATGTGACAAATGGGATTGCTTCCTACTTGATACTTTACCTAATCTAGGTAAAATTGCCAATAAGGCTACTTGTAGGGAATAAGGTATATCTAAATAATTTCTACGCTTTATTTTAATAATGATACAAAAGAAACCAGTCTCACAATGGAATGGAGGGAGAGATTTTAGAGCAATTTTCAGTGAGCTCAGTTTATTCATTTTAAAATTTTATCTAAGATGGAGCCAGAGCCACTATGCTTTCAAAGTCTTCCAATCCCTCAACAGACCTGAGTGCCAGCAATATATCCTGTAAATTATAATTAAATATAATTATCTTTTGGTGAAATAAATGGATCCTAGATCCATGGATTTTTTAGACATAGATCTTCTTTTGATGG</dnaseq>|
 
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[[Category:Intronic(S)]]
+
[[Category:Intronic(S)]][[Category:NONHSAG015683]]

Revision as of 12:06, 13 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT039199

Source

NONCODE4.0

Same with

,

Classification

intronic(S)

Length

1723 nt

Genomic location

chr14-:90296178..90303007

Exon number

3

Exons

90296178..90297560,90299421..90299521,90302769..90303007

Genome context

Sequence
000001 AGATGTACAT TAATAATGAG CTAGAAGGGA GAGGTTTTAT TTGGGATTCA TCAATTTCCT GGAGGTTCAT GTGGAACATC 000080
000081 TATGGCACAG GGGAGTACTG ACGTCTGGTC CCTAGCCCTG CTCCCCATGG TGAAGAGCCT TACACACTGT GTGGACACAC 000160
000161 CGCCCCCAAC ATCCATGCTT AATCCACATC CCCTTCAAAC AACCACTCTG GGCAGACCCT CAGGAAGAGG CCTGCAAAGG 000240
000241 GAAAACTCTT GTCGGTCCAG AGAAGAAAGA ATTGCCAAAA TTAAATAAAA AGTCAAGATT CCATTACCTG ATGATTTGTG 000320
000321 TATTTCACGT TGTTTGCAAC AAACCTGGAA GTCATCCCAA GTTCCTTTCT TTTTCTTACC CTCCACATCC AAGCTGTCAA 000400
000401 CAAATCTCGA CTCTGACCAC CTCTCAGCAC CTCCACTGTG TCACCCAGTG CAAACCTCCA CCACCATCTC AGCCTCTTAC 000480
000481 CCAGCTCCAG GATTCTGCCT TTGCCCCCAT CAATCTACTT CAGGTCTCTT CTCCACCCAA TAAATAAGTC CAGCAATGAT 000560
000561 CCTTGTAAAA TGTACATCAG GAGGGGCCTT CTCATCTCAC CTATGATAGG TATGGAGTTT TTTCTTTTTT CCATTTCACC 000640
000641 TGTGATGTAT GTTTGTGACC TCCAATATGT AACCACTTAC TATGTTGCTT TTAAAATGAT TTTTAAAGGT TTGTTTACAA 000720
000721 CCATAGCCAC TATTTGCAAT TATGAGTGTA TAGCACTAAG CATGAGAACT AGATCTGTGA AATTTTTTGC CAGTTTCATT 000800
000801 AGGTGACCTC TGTAAGCATC AAAACCTGGC ATTGATTGAG GTTGTTTCAG GCTCAACTAG TACTGTTCAA AATAAAGTAA 000880
000881 CTGAAAGCAA GTCTGGTGGT AGAAGGTACT TTATAAGCTA ACTAATGCTT TTCAAAGGGA TATATATTGA AGGAAAGGCT 000960
000961 CGTTTTATAT TACATCCTAT AAGGCAGTGC TTCTTAAACT CTCTGTGGAA AAGAACCACT TTTTATAAAT TTCCAGTCTG 001040
001041 TTGCAAACCG ATACTTTGTA AAAATTAATA AAAGTGAATT ACTAGAAAAA TGAAATTTTT GAAAAAGACA TATAAAATAA 001120
001121 AAGTTGTAAT TTTTAGCAAA CAGGAAGTTA TATTGCAAAA ATTACTGGGG TATAGGAAAA AAGATACAAA AATTGTTCGT 001200
001201 GTTTGTTCAT TGAAAGTATG CGTGTAAGCA ATTAATAGGC TATTGCACTT GTAAGTTTTC TTCATTTTAA GGGAAAATGG 001280
001281 AATTCCCATA TTAAATGTCT ATTTGTACAC TTTGAACACA ATGTGGATAA ATATTTAAAG TTTTTAATGT GACAAATGGG 001360
001361 ATTGCTTCCT ACTTGATACT TTACCTAATC TAGGTAAAAT TGCCAATAAG GCTACTTGTA GGGAATAAGG TATATCTAAA 001440
001441 TAATTTCTAC GCTTTATTTT AATAATGATA CAAAAGAAAC CAGTCTCACA ATGGAATGGA GGGAGAGATT TTAGAGCAAT 001520
001521 TTTCAGTGAG CTCAGTTTAT TCATTTTAAA ATTTTATCTA AGATGGAGCC AGAGCCACTA TGCTTTCAAA GTCTTCCAAT 001600
001601 CCCTCAACAG ACCTGAGTGC CAGCAATATA TCCTGTAAAT TATAATTAAA TATAATTATC TTTTGGTGAA ATAAATGGAT 001680
001681 CCTAGATCCA TGGATTTTTT AGACATAGAT CTTCTTTTGA TGG
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Predicted Small Protein

Name NONHSAT039199_smProtein_569:805
Length 79
Molecular weight 9171.0181
Aromaticity 0.192307692308
Instability index 49.3448717949
Isoelectric point 9.40814208984
Runs 17
Runs residual 0.0842714196373
Runs probability 0.0418757858204
Amino acid sequence MYIRRGLLISPMIGMEFFLFSISPVMYVCDLQYVTTYYVAFKMIFKGLFTTIATICNYEC
IALSMRTRSVKFFASFIR
Secondary structure LEEELLEEEELLLLLLLEEEEELLEEEEELLLLLLHHHHHHHHHHHHHHHHHHEEELLHH
HHHHEEELLHHHHHHHLL
PRMN LLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHHHHHHHHHHHHHHHHHHLL
LLLLLLLLLLLLLLLLLL
PiMo iiiiiiiiiiiTTTTTTTTTTTTTTTTTTooooTTTTTTTTTTTTTTTTTTTTTTTTTii
iiiiiiiiiiiiiiiiii