Difference between revisions of "NONHSAT133799"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>TTAAGATTTGTCTTCTTGCTGATTTCACTTCTTGCTGACTTAAAGAAACTATTACCTCAATCCAGTTTTAAATAAAGGTCAGATTAGAAAAGCATAAACTTATTTAAATGTTATTTTACTTCCCCCATTATTCCCAACTTTGTAGTGTATTTAGGTTACAAAAAATTTACAAAGTCTTCCTTGGATCTTTACCTACTTAGGTGTCCCCTCAGCTCTCAGCACTATCTAAATAAAATAGTTCACTTCTCTGACAGTGTCAAATCTTGGTTCTCCTCCTCTGTGTACATCACTGCTTGGAAATTTTTACATGCTTTTCCTACTTGTCCCAGAGTTTCTTTCTCTCCACCAGCCCTATACTTCTGTCCAAAGTGTACAATACTTTTCAAGTATTTACCTGGATATTTAGGAAAAATAAAACCATCTCTTTAGGTTTGTCTTTTTTCCTCCAAAATTCAAAGATATCACTTCAGGTCCACTCTTTGCTTTGCTGTTCCTGTTAAAAATGGAAACTTATAGGGAGAAATTATATGAAGAAAAACATAGTGGAAATTGGAAAGAATGAAAATATAGATTGGAAAATTCTTCTTTTATTCTTTTATTTTCTAAAAGCATAGACTTTTGCAGCTCAAAATTCTATATCATTATACATTCTCAACAGTTTTTTAACAAATGTTATAGATTAAAAATATTTCAGATAATAGTTATAATAGCTTCCAGTTCTTTTTCTTTGTCATCTGTATGATTAAGCATAACAACTCACTCTTAAACATGGGCAAGGACTTTCTAAGCATAAAAGCAGAGAGTGCAAATATAATAAACATGTCTACATAATATGTATGCATGTCTGATCCTCCAAATCTGTGTGTGTAGATAGTGAAAGACTATTCACTGAGAAACGTGATTGGATATTGCTTGAATGTTTTCTGAAAAATTCTTTTTCTCCCTATTCCAGGAGTCTATGAACTGGCCACTTTTCAGATGAAACCTGGTGGGCCAGCTCTGTGGGGTGATGCATTTAAAAGGGCAGTTCATGCTCATGTCAATCTAGGCTACACAAAACTAGTTGGAGTGTTCCACACAGAGTACGGAGCACTCAACAGAGTTCATGTTCTTTGGTGGAATGAGAGTGCAGATAGTCGTGCAGCTGG</dnaseq>| | sequence = <dnaseq>TTAAGATTTGTCTTCTTGCTGATTTCACTTCTTGCTGACTTAAAGAAACTATTACCTCAATCCAGTTTTAAATAAAGGTCAGATTAGAAAAGCATAAACTTATTTAAATGTTATTTTACTTCCCCCATTATTCCCAACTTTGTAGTGTATTTAGGTTACAAAAAATTTACAAAGTCTTCCTTGGATCTTTACCTACTTAGGTGTCCCCTCAGCTCTCAGCACTATCTAAATAAAATAGTTCACTTCTCTGACAGTGTCAAATCTTGGTTCTCCTCCTCTGTGTACATCACTGCTTGGAAATTTTTACATGCTTTTCCTACTTGTCCCAGAGTTTCTTTCTCTCCACCAGCCCTATACTTCTGTCCAAAGTGTACAATACTTTTCAAGTATTTACCTGGATATTTAGGAAAAATAAAACCATCTCTTTAGGTTTGTCTTTTTTCCTCCAAAATTCAAAGATATCACTTCAGGTCCACTCTTTGCTTTGCTGTTCCTGTTAAAAATGGAAACTTATAGGGAGAAATTATATGAAGAAAAACATAGTGGAAATTGGAAAGAATGAAAATATAGATTGGAAAATTCTTCTTTTATTCTTTTATTTTCTAAAAGCATAGACTTTTGCAGCTCAAAATTCTATATCATTATACATTCTCAACAGTTTTTTAACAAATGTTATAGATTAAAAATATTTCAGATAATAGTTATAATAGCTTCCAGTTCTTTTTCTTTGTCATCTGTATGATTAAGCATAACAACTCACTCTTAAACATGGGCAAGGACTTTCTAAGCATAAAAGCAGAGAGTGCAAATATAATAAACATGTCTACATAATATGTATGCATGTCTGATCCTCCAAATCTGTGTGTGTAGATAGTGAAAGACTATTCACTGAGAAACGTGATTGGATATTGCTTGAATGTTTTCTGAAAAATTCTTTTTCTCCCTATTCCAGGAGTCTATGAACTGGCCACTTTTCAGATGAAACCTGGTGGGCCAGCTCTGTGGGGTGATGCATTTAAAAGGGCAGTTCATGCTCATGTCAATCTAGGCTACACAAAACTAGTTGGAGTGTTCCACACAGAGTACGGAGCACTCAACAGAGTTCATGTTCTTTGGTGGAATGAGAGTGCAGATAGTCGTGCAGCTGG</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Sense]] | + | [[Category:Sense]][[Category:NONHSAG053093]] |
Revision as of 12:12, 13 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT133799 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
sense |
| Length |
1148 nt |
| Genomic location |
chr9+:107515880..107521411 |
| Exon number |
2 |
| Exons |
107515880..107516981,107521366..107521411 |
| Genome context |
|
| Sequence |
000001 TTAAGATTTG TCTTCTTGCT GATTTCACTT CTTGCTGACT TAAAGAAACT ATTACCTCAA TCCAGTTTTA AATAAAGGTC 000080
000081 AGATTAGAAA AGCATAAACT TATTTAAATG TTATTTTACT TCCCCCATTA TTCCCAACTT TGTAGTGTAT TTAGGTTACA 000160 000161 AAAAATTTAC AAAGTCTTCC TTGGATCTTT ACCTACTTAG GTGTCCCCTC AGCTCTCAGC ACTATCTAAA TAAAATAGTT 000240 000241 CACTTCTCTG ACAGTGTCAA ATCTTGGTTC TCCTCCTCTG TGTACATCAC TGCTTGGAAA TTTTTACATG CTTTTCCTAC 000320 000321 TTGTCCCAGA GTTTCTTTCT CTCCACCAGC CCTATACTTC TGTCCAAAGT GTACAATACT TTTCAAGTAT TTACCTGGAT 000400 000401 ATTTAGGAAA AATAAAACCA TCTCTTTAGG TTTGTCTTTT TTCCTCCAAA ATTCAAAGAT ATCACTTCAG GTCCACTCTT 000480 000481 TGCTTTGCTG TTCCTGTTAA AAATGGAAAC TTATAGGGAG AAATTATATG AAGAAAAACA TAGTGGAAAT TGGAAAGAAT 000560 000561 GAAAATATAG ATTGGAAAAT TCTTCTTTTA TTCTTTTATT TTCTAAAAGC ATAGACTTTT GCAGCTCAAA ATTCTATATC 000640 000641 ATTATACATT CTCAACAGTT TTTTAACAAA TGTTATAGAT TAAAAATATT TCAGATAATA GTTATAATAG CTTCCAGTTC 000720 000721 TTTTTCTTTG TCATCTGTAT GATTAAGCAT AACAACTCAC TCTTAAACAT GGGCAAGGAC TTTCTAAGCA TAAAAGCAGA 000800 000801 GAGTGCAAAT ATAATAAACA TGTCTACATA ATATGTATGC ATGTCTGATC CTCCAAATCT GTGTGTGTAG ATAGTGAAAG 000880 000881 ACTATTCACT GAGAAACGTG ATTGGATATT GCTTGAATGT TTTCTGAAAA ATTCTTTTTC TCCCTATTCC AGGAGTCTAT 000960 000961 GAACTGGCCA CTTTTCAGAT GAAACCTGGT GGGCCAGCTC TGTGGGGTGA TGCATTTAAA AGGGCAGTTC ATGCTCATGT 001040 001041 CAATCTAGGC TACACAAAAC TAGTTGGAGT GTTCCACACA GAGTACGGAG CACTCAACAG AGTTCATGTT CTTTGGTGGA 001120 001121 ATGAGAGTGC AGATAGTCGT GCAGCTGG |
Predicted Small Protein
| Name | NONHSAT133799_smProtein_107:199 |
| Length | 31 |
| Molecular weight | 3627.3221 |
| Aromaticity | 0.233333333333 |
| Instability index | 59.647 |
| Isoelectric point | 9.51544189453 |
| Runs | 5 |
| Runs residual | 0.0355855855856 |
| Runs probability | 0.00429252782193 |
| Amino acid sequence | MLFYFPHYSQLCSVFRLQKIYKVFLGSLPT |
| Secondary structure | LEEELLLLHHHHHHHHHHHHHHHHHHHLLL |
| PRMN | - |
| PiMo | - |
