Difference between revisions of "NONHSAT114684"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>ctggtacctgtagtcatagctacttaggaggctgaggcaggagaatggtgtgaacccaggaggcggagcttgcagtgagccgagatcgccccactgcactccagcctgggcaatagagcgagactctgtctcaaaaaacaaaacaaaacaaaaaacaaacaaaaaaaTTGACCCTCTTGCAGAAAAGCCCTATTTGTATTGGGGTTTTTCTTTCTCCTTGGCACACTGACATGTATCCCAAGTATATAAAGCACAGAAGTATAGAAATAAGGGAACTCTTACATGATTTTTCTTACTATTGTGTGGGACTTCAACTCTTATGTGCTAGACCTACAGTTCTTTCTAAGGAAGACTAATAATGCATGATGAGTAATAATTTATACCCACTGACATTGCCTGGATATTTatcattagaattcccgagctgtgagggccttgagaaggaatctagccttttacagataaaggagctcaggctcataggggtgaagtaactgtcatattcacacctacaggaagaggcagagctagaacttgattgtacctgagttttcttacttccatccagcactcttctgactacagcATTTGCAGCAATATAAGATTCACTCAGTACATTCTACTCACAAACAGTATCTAGAATAGTCATATGTCCAATAAAGTATCTGCAGTCAtctgttctggtggccataactaaatgccatagactgggtgcttaaacaacaaattaattttgtcacagttctggaggttggaattccaagattaaggtgctgtcagggttggtttccggtgaggcctcccctcccagtctcttatctgtgcacgcagggaaaaagagagagcatgcagtgcattttggtttctcttcttcttataaggacacccagattagggcctcacccttataacattatttagctttatttaccctcctaaaggccccatctccatgtacattcacactgggggttagggcttcaacatatggattttggagggacccaaTTTACTTAATAATATAATTTATCTATatctatctat</dnaseq>| | sequence = <dnaseq>ctggtacctgtagtcatagctacttaggaggctgaggcaggagaatggtgtgaacccaggaggcggagcttgcagtgagccgagatcgccccactgcactccagcctgggcaatagagcgagactctgtctcaaaaaacaaaacaaaacaaaaaacaaacaaaaaaaTTGACCCTCTTGCAGAAAAGCCCTATTTGTATTGGGGTTTTTCTTTCTCCTTGGCACACTGACATGTATCCCAAGTATATAAAGCACAGAAGTATAGAAATAAGGGAACTCTTACATGATTTTTCTTACTATTGTGTGGGACTTCAACTCTTATGTGCTAGACCTACAGTTCTTTCTAAGGAAGACTAATAATGCATGATGAGTAATAATTTATACCCACTGACATTGCCTGGATATTTatcattagaattcccgagctgtgagggccttgagaaggaatctagccttttacagataaaggagctcaggctcataggggtgaagtaactgtcatattcacacctacaggaagaggcagagctagaacttgattgtacctgagttttcttacttccatccagcactcttctgactacagcATTTGCAGCAATATAAGATTCACTCAGTACATTCTACTCACAAACAGTATCTAGAATAGTCATATGTCCAATAAAGTATCTGCAGTCAtctgttctggtggccataactaaatgccatagactgggtgcttaaacaacaaattaattttgtcacagttctggaggttggaattccaagattaaggtgctgtcagggttggtttccggtgaggcctcccctcccagtctcttatctgtgcacgcagggaaaaagagagagcatgcagtgcattttggtttctcttcttcttataaggacacccagattagggcctcacccttataacattatttagctttatttaccctcctaaaggccccatctccatgtacattcacactgggggttagggcttcaacatatggattttggagggacccaaTTTACTTAATAATATAATTTATCTATatctatctat</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG044708]] |
Revision as of 12:12, 13 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT114684 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
1044 nt |
| Genomic location |
chr6+:117974549..117975592 |
| Exon number |
1 |
| Exons |
117974549..117975592 |
| Genome context |
|
| Sequence |
000001 ctggtacctg tagtcatagc tacttaggag gctgaggcag gagaatggtg tgaacccagg aggcggagct tgcagtgagc 000080
000081 cgagatcgcc ccactgcact ccagcctggg caatagagcg agactctgtc tcaaaaaaca aaacaaaaca aaaaacaaac 000160 000161 aaaaaaaTTG ACCCTCTTGC AGAAAAGCCC TATTTGTATT GGGGTTTTTC TTTCTCCTTG GCACACTGAC ATGTATCCCA 000240 000241 AGTATATAAA GCACAGAAGT ATAGAAATAA GGGAACTCTT ACATGATTTT TCTTACTATT GTGTGGGACT TCAACTCTTA 000320 000321 TGTGCTAGAC CTACAGTTCT TTCTAAGGAA GACTAATAAT GCATGATGAG TAATAATTTA TACCCACTGA CATTGCCTGG 000400 000401 ATATTTatca ttagaattcc cgagctgtga gggccttgag aaggaatcta gccttttaca gataaaggag ctcaggctca 000480 000481 taggggtgaa gtaactgtca tattcacacc tacaggaaga ggcagagcta gaacttgatt gtacctgagt tttcttactt 000560 000561 ccatccagca ctcttctgac tacagcATTT GCAGCAATAT AAGATTCACT CAGTACATTC TACTCACAAA CAGTATCTAG 000640 000641 AATAGTCATA TGTCCAATAA AGTATCTGCA GTCAtctgtt ctggtggcca taactaaatg ccatagactg ggtgcttaaa 000720 000721 caacaaatta attttgtcac agttctggag gttggaattc caagattaag gtgctgtcag ggttggtttc cggtgaggcc 000800 000801 tcccctccca gtctcttatc tgtgcacgca gggaaaaaga gagagcatgc agtgcatttt ggtttctctt cttcttataa 000880 000881 ggacacccag attagggcct cacccttata acattattta gctttattta ccctcctaaa ggccccatct ccatgtacat 000960 000961 tcacactggg ggttagggct tcaacatatg gattttggag ggacccaaTT TACTTAATAA TATAATTTAT CTATatctat 001040 001041 ctat |
Predicted Small Protein
| Name | NONHSAT114684_smProtein_362:493 |
| Length | 44 |
| Molecular weight | 4855.6895 |
| Aromaticity | 0.0697674418605 |
| Instability index | 59.6046511628 |
| Isoelectric point | 5.06207275391 |
| Runs | 5 |
| Runs residual | 0.0410243010191 |
| Runs probability | 0.0322204557499 |
| Amino acid sequence | MMSNNLYPLTLPGYLSLEFPSCEGLEKESSLLQIKELRLIGVK |
| Secondary structure | LLLLLLLLLLLLLEEELLLLLLLLLLLLLLHHHHHHHHHHLLL |
| PRMN | - |
| PiMo | - |
