Difference between revisions of "NONHSAT115325"

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(Created page with "Please input one-sentence summary here. ==Annotated Information== ===Transcriptomic Nomeclature=== Please input transcriptomic nomeclature information here. ===Functio...")
 
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sequence = <dnaseq>AATGGAATGCTATCTCTAGAGTACTGAAAGAAACTAAAGGCCAACGTGTGAAAAACAATCTTCAGAAATGAACGTTAAATGATGACATTTTCAAACAAACAAGCAACAAAAAGAAGCAAAAAGTAAACAAAAAACAAAAATTCACATAATTTATTGCTAGGAGTTTTACACTGAAATGCTGAAGGGATTTCTACTAGCAAAAGTAAAAATGATCTCATTTGAAAAGATGGAAATTCAAGGAGGGAATGAAGAATACTGGATGGGTAAATGTGTTGGTAACTGTAAATGAATACTGACTACACAAAATTATGTTGAATAACTGAAAGATGAAAACACAATCACTTGAAGGAGAAATGTATGGTCAAACTGCATGCAGGAAAAACTTCTATAAAAGAGTTACTTCATGCTCTGGGTTGGCAGATACAATGAGCAGGAGTGCATCAGAAGTAATCAAGAAGGTGATTAGTTGGTGTACTTCAGCAGGAGCAACCAGATGAATTGGCTTCTCTATATCCCCGTATTAGCCACAAGCTAGGCAGCAGCCTGCAGGTGGGAGCAATGCCTATGCATGTATGGATCAGTGTGCTACATACAGTCACGTTGACAGCATGAACCTTCGATGTGATGTGAGGAAAATGGCATTCTACCTCTGTGTTCTTCCTCCCCAAAATTTGTAACCACCATCTAATCATGAGGAAAACATCATACAAGTCCAAATTGAGGAAGATTCTACAAAATGCCTGATTAATATTCATCGAAACTGTCAAGGTCATCAAAAGCAAGGAAAGTCTGAGAAACTGCCACAGCCTAAAGACAATCCAGGGAAACGTGATGACTCAGTGGTATTCGGGGTGGGTTTCTGGAACAGCAAAAGGACAACAGGTACCCTGAGCCACTATCTAAATTGTCTGCTTACCTTATGAAGACACCATAAGGAGGTATAACGTGTGGTGAGCACAGGTGAAGAGCTAGAGGCCTGAAACTAGATGGGGAGGGAGAAGCCAGCCATGCCTGCATCCAGGGCTGCACTCAGCCTCCCAGCATCTGTGCAGAGGCATCAGTCAAGCCACAGCTAACTGCAGTCCCAGCTAACATTATGTGGAACATCCCAGTCATCCCAGATCATCCCAGTCAACCAAGATCATAAAATTGTTTTCAGCTATTAAGTTTAAATATGTGAAATAAGGAGATAAAAATACTGACTTGGACTCTGTCTGAATGAAAGGATTAGTAGATTAGATTAGTGATTCTTAAAAGACTTTCTTGGATGCATATAAGTGTCCACAAAATAAGAGTATGATGGTTTCCAGGTACAAATAAGATGGAAAACTATTTTGTGAATCAGAATTAAATTGGTTTATTTACTGTAGAACTTCTAAGAGGCTTTAACATGTACATTTAATTATCATAAGCCTTATGAAAACTCCAGGAGGACAGAAGAGTTGCCTGTGACTTTTTTTAAAGTGTTTATTCACATCCCAAGGAAGGATTCCCAGAAGAGATGATGCCTAAGCAGTGTCCCAACCATGAAATAAAGTCTCCTAGCTACTGGACAAGATCATCTCGAAGCTTATTTCCAGCTCCAAATGTTATTATTTTCCTCAAACCCATTATAAAATGGCCTCTCTTAGCACTATGAGATCTGTAATACAAGAAGTAGAACAAACACATGAAGTTCCTGTTGGAAATTCAAACTTCTCATACAGCCTTCACTGAGTTCTACTCATTATGGATAAAGGCTTCTGCTTTGAGTCACCTAAGTACTTTTGACCCCCAACTTAATCAATGCCTTGAAGTGAAAATACAGTGTCAGGCAGTCCCTATTCATGACACAAACAAACCAACCAACTCATATCATGACTTAATGGTGTGAGACCTCAGTAAAAACTTTATATGAACT</dnaseq>|
 
sequence = <dnaseq>AATGGAATGCTATCTCTAGAGTACTGAAAGAAACTAAAGGCCAACGTGTGAAAAACAATCTTCAGAAATGAACGTTAAATGATGACATTTTCAAACAAACAAGCAACAAAAAGAAGCAAAAAGTAAACAAAAAACAAAAATTCACATAATTTATTGCTAGGAGTTTTACACTGAAATGCTGAAGGGATTTCTACTAGCAAAAGTAAAAATGATCTCATTTGAAAAGATGGAAATTCAAGGAGGGAATGAAGAATACTGGATGGGTAAATGTGTTGGTAACTGTAAATGAATACTGACTACACAAAATTATGTTGAATAACTGAAAGATGAAAACACAATCACTTGAAGGAGAAATGTATGGTCAAACTGCATGCAGGAAAAACTTCTATAAAAGAGTTACTTCATGCTCTGGGTTGGCAGATACAATGAGCAGGAGTGCATCAGAAGTAATCAAGAAGGTGATTAGTTGGTGTACTTCAGCAGGAGCAACCAGATGAATTGGCTTCTCTATATCCCCGTATTAGCCACAAGCTAGGCAGCAGCCTGCAGGTGGGAGCAATGCCTATGCATGTATGGATCAGTGTGCTACATACAGTCACGTTGACAGCATGAACCTTCGATGTGATGTGAGGAAAATGGCATTCTACCTCTGTGTTCTTCCTCCCCAAAATTTGTAACCACCATCTAATCATGAGGAAAACATCATACAAGTCCAAATTGAGGAAGATTCTACAAAATGCCTGATTAATATTCATCGAAACTGTCAAGGTCATCAAAAGCAAGGAAAGTCTGAGAAACTGCCACAGCCTAAAGACAATCCAGGGAAACGTGATGACTCAGTGGTATTCGGGGTGGGTTTCTGGAACAGCAAAAGGACAACAGGTACCCTGAGCCACTATCTAAATTGTCTGCTTACCTTATGAAGACACCATAAGGAGGTATAACGTGTGGTGAGCACAGGTGAAGAGCTAGAGGCCTGAAACTAGATGGGGAGGGAGAAGCCAGCCATGCCTGCATCCAGGGCTGCACTCAGCCTCCCAGCATCTGTGCAGAGGCATCAGTCAAGCCACAGCTAACTGCAGTCCCAGCTAACATTATGTGGAACATCCCAGTCATCCCAGATCATCCCAGTCAACCAAGATCATAAAATTGTTTTCAGCTATTAAGTTTAAATATGTGAAATAAGGAGATAAAAATACTGACTTGGACTCTGTCTGAATGAAAGGATTAGTAGATTAGATTAGTGATTCTTAAAAGACTTTCTTGGATGCATATAAGTGTCCACAAAATAAGAGTATGATGGTTTCCAGGTACAAATAAGATGGAAAACTATTTTGTGAATCAGAATTAAATTGGTTTATTTACTGTAGAACTTCTAAGAGGCTTTAACATGTACATTTAATTATCATAAGCCTTATGAAAACTCCAGGAGGACAGAAGAGTTGCCTGTGACTTTTTTTAAAGTGTTTATTCACATCCCAAGGAAGGATTCCCAGAAGAGATGATGCCTAAGCAGTGTCCCAACCATGAAATAAAGTCTCCTAGCTACTGGACAAGATCATCTCGAAGCTTATTTCCAGCTCCAAATGTTATTATTTTCCTCAAACCCATTATAAAATGGCCTCTCTTAGCACTATGAGATCTGTAATACAAGAAGTAGAACAAACACATGAAGTTCCTGTTGGAAATTCAAACTTCTCATACAGCCTTCACTGAGTTCTACTCATTATGGATAAAGGCTTCTGCTTTGAGTCACCTAAGTACTTTTGACCCCCAACTTAATCAATGCCTTGAAGTGAAAATACAGTGTCAGGCAGTCCCTATTCATGACACAAACAAACCAACCAACTCATATCATGACTTAATGGTGTGAGACCTCAGTAAAAACTTTATATGAACT</dnaseq>|
 
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[[Category:Intergenic]]
+
[[Category:Intergenic]][[Category:NONHSAG045032]]

Revision as of 12:27, 13 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT115325

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1900 nt

Genomic location

chr6-:143287558..143359214

Exon number

3

Exons

143287558..143288578,143342803..143343090,143358126..143359214

Genome context

Sequence
000001 AATGGAATGC TATCTCTAGA GTACTGAAAG AAACTAAAGG CCAACGTGTG AAAAACAATC TTCAGAAATG AACGTTAAAT 000080
000081 GATGACATTT TCAAACAAAC AAGCAACAAA AAGAAGCAAA AAGTAAACAA AAAACAAAAA TTCACATAAT TTATTGCTAG 000160
000161 GAGTTTTACA CTGAAATGCT GAAGGGATTT CTACTAGCAA AAGTAAAAAT GATCTCATTT GAAAAGATGG AAATTCAAGG 000240
000241 AGGGAATGAA GAATACTGGA TGGGTAAATG TGTTGGTAAC TGTAAATGAA TACTGACTAC ACAAAATTAT GTTGAATAAC 000320
000321 TGAAAGATGA AAACACAATC ACTTGAAGGA GAAATGTATG GTCAAACTGC ATGCAGGAAA AACTTCTATA AAAGAGTTAC 000400
000401 TTCATGCTCT GGGTTGGCAG ATACAATGAG CAGGAGTGCA TCAGAAGTAA TCAAGAAGGT GATTAGTTGG TGTACTTCAG 000480
000481 CAGGAGCAAC CAGATGAATT GGCTTCTCTA TATCCCCGTA TTAGCCACAA GCTAGGCAGC AGCCTGCAGG TGGGAGCAAT 000560
000561 GCCTATGCAT GTATGGATCA GTGTGCTACA TACAGTCACG TTGACAGCAT GAACCTTCGA TGTGATGTGA GGAAAATGGC 000640
000641 ATTCTACCTC TGTGTTCTTC CTCCCCAAAA TTTGTAACCA CCATCTAATC ATGAGGAAAA CATCATACAA GTCCAAATTG 000720
000721 AGGAAGATTC TACAAAATGC CTGATTAATA TTCATCGAAA CTGTCAAGGT CATCAAAAGC AAGGAAAGTC TGAGAAACTG 000800
000801 CCACAGCCTA AAGACAATCC AGGGAAACGT GATGACTCAG TGGTATTCGG GGTGGGTTTC TGGAACAGCA AAAGGACAAC 000880
000881 AGGTACCCTG AGCCACTATC TAAATTGTCT GCTTACCTTA TGAAGACACC ATAAGGAGGT ATAACGTGTG GTGAGCACAG 000960
000961 GTGAAGAGCT AGAGGCCTGA AACTAGATGG GGAGGGAGAA GCCAGCCATG CCTGCATCCA GGGCTGCACT CAGCCTCCCA 001040
001041 GCATCTGTGC AGAGGCATCA GTCAAGCCAC AGCTAACTGC AGTCCCAGCT AACATTATGT GGAACATCCC AGTCATCCCA 001120
001121 GATCATCCCA GTCAACCAAG ATCATAAAAT TGTTTTCAGC TATTAAGTTT AAATATGTGA AATAAGGAGA TAAAAATACT 001200
001201 GACTTGGACT CTGTCTGAAT GAAAGGATTA GTAGATTAGA TTAGTGATTC TTAAAAGACT TTCTTGGATG CATATAAGTG 001280
001281 TCCACAAAAT AAGAGTATGA TGGTTTCCAG GTACAAATAA GATGGAAAAC TATTTTGTGA ATCAGAATTA AATTGGTTTA 001360
001361 TTTACTGTAG AACTTCTAAG AGGCTTTAAC ATGTACATTT AATTATCATA AGCCTTATGA AAACTCCAGG AGGACAGAAG 001440
001441 AGTTGCCTGT GACTTTTTTT AAAGTGTTTA TTCACATCCC AAGGAAGGAT TCCCAGAAGA GATGATGCCT AAGCAGTGTC 001520
001521 CCAACCATGA AATAAAGTCT CCTAGCTACT GGACAAGATC ATCTCGAAGC TTATTTCCAG CTCCAAATGT TATTATTTTC 001600
001601 CTCAAACCCA TTATAAAATG GCCTCTCTTA GCACTATGAG ATCTGTAATA CAAGAAGTAG AACAAACACA TGAAGTTCCT 001680
001681 GTTGGAAATT CAAACTTCTC ATACAGCCTT CACTGAGTTC TACTCATTAT GGATAAAGGC TTCTGCTTTG AGTCACCTAA 001760
001761 GTACTTTTGA CCCCCAACTT AATCAATGCC TTGAAGTGAA AATACAGTGT CAGGCAGTCC CTATTCATGA CACAAACAAA 001840
001841 CCAACCAACT CATATCATGA CTTAATGGTG TGAGACCTCA GTAAAAACTT TATATGAACT
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Predicted Small Protein

Name NONHSAT115325_smProtein_326:496
Length 57
Molecular weight 6156.0167
Aromaticity 0.0714285714286
Instability index 58.4430357143
Isoelectric point 9.50701904297
Runs 11
Runs residual 0.0431303669009
Runs probability 0.0496459025871
Amino acid sequence MKTQSLEGEMYGQTACRKNFYKRVTSCSGLADTMSRSASEVIKKVISWCTSAGATR
Secondary structure LLLLLLLEEEELEELLLLLEEEEEELLLHHHHHHLLLHHHHHHHHHHHHHLLLLLL
PRMN -
PiMo -