Difference between revisions of "NONHSAT092826"

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(Created page with "Please input one-sentence summary here. ==Annotated Information== ===Transcriptomic Nomeclature=== Please input transcriptomic nomeclature information here. ===Functio...")
 
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sequence = <dnaseq>GACTCAGCCCGCCTGCACCCAGGTGAAATAAACAGCCTTGTTGCTCACACAAAGCCTGTTTGGTGGTCTCCTCACATAGATGAGTGTGAAATTTGGTGCTGTGACTCAGATCAGGGGACCTCCCTTGGGAGATCAATCCCCTGTCCTTCTGCTCTTTGCTCCATGAGAAAGATCCACCTACGACCTCAGGTCCTCAGACTGACCAGCCCAAGGAACATCACACCAATTTTAAATAAGGTAAGCGGCCTCTTTTTACTCTCTTCTCCAACCTCTCTCACTATCCCTCAACCCCACCAGGCCAAGGAATGCCCACGTCCTGGGATTCCTCCTAAGCCATGTCCCATCTGTGTAGGACCCCACTGGAAACTGGACCATCCAACTCTCCCGGCAGCCACTTCCAGAGCCCCTGGAACTCTGGCCCAAGGCTCTCTGACTGACTCCTTCCCAGATCTTCTTGGCTTAGCACCTGAAGACTGATGCTGCTCAATCACCTTGGAAGCCTACAGGACCATCACAGACACTTTCGGTAACTCTTACAGTGGAGGGCTTATTGTAGTTTCTCAAATATTTCTTCCTCCTTTTTCTTTCTTTTCTGTTTTGGACAGGCTGGGGAGTCCTGCTTAAGACATAAATATACATTAGCCCAAAGTTTCTGTAGAGGAAAAGAAAAGAACATCGAAAGCAGAATAATATTTTGAGTAGGTAATTTCTCAGAGTTTGTTGATCCCAGTAGCCCCTGGGGAGTAATGGGATCACCTTAATAATGATAATTTAAAGTTTTCTGGCTCTTGTGTCCCCTCCTCAGAGCTTAGCTAATAATCCCTTCAATGTTTTTTTCTTATCCTACTCTCTCCCTAGAACCCAGACATACATCCATGGCAGGGCCAGACGAACTCAAGTGGCACTTGCCACACTGAACTCAGAATCACTACATGAAGCTTATCGTGCCTGGCTCCTTTTTTGACAAAGTTAAGCTCTCCCAGGAGGCTCCTCAGGTTTTTGCAAGAAGGCTTGGGTTTATTTGCTCCATCAGGTTGGCAAAAATGTTTGGATCACACTTCCACTCAAGCAACATGTCTGGATTCTCAGAGTCTCCTGATGCAAACAGGTAGGTATATCCAGATGTACGAGATGAGACTTATGGAGGCTCACTTGCCCAGAGTTTCTCAGCTGGTCACTTGCTCAGCAGAAGTTGAATTCTTGATCCAGGTCTCTGAAGCATGTGCGAGGTATTGCTCTAAAGTTTGAGTTATGAATTCAAATGTTGTCAGGGCTCAGGTGAGGAAAAGAGTAAAACTGGCTAGGTGGAGACTGAAGATTTGGAAGCAATTTTTGGCATGGAAGAACTTGAGACCAGCATTACCAGATCTTCCCATTTTTCAAGAGAAACTGAAAATATCTTCTCTTTAATGTGAAATCTCTGTATTTAAAATGCTATATATTAATTTTTTTAAATAAACAGGATTTGGGTTAGGCACAATTCTCTGGTTATATCCTCTGATCCAAACCAGGGTTCCACCACCATGATCTCAGCCATGATGTCTCTTTGGCTTCCTCCAATCTGTAAGAAAACCAATCTGGGGACTCTACCAGCGGCTAAGTATGTTTGTTCCAATTATGCAGTCTGGATTTGAAGAAATAACCACAGGATGGGTTCTGGGACCCACCAAATCCACTGTGAGACAGATTTAAGCTGAAACTACATTGATCACCTGACCTCTGTAAGCCTCTACCTGCTCTGACTGGACTGACATTATGGGTCTCCCAGAATCAATATACAGTTGACCCTTGAATAATATGAATTTGAACTACACAAATCCACCTATATGTGGATTTTTTTCAACAAATGCATTAAAAATGTTTTTGCAACAATTTGAAAAAAAC</dnaseq>|
 
sequence = <dnaseq>GACTCAGCCCGCCTGCACCCAGGTGAAATAAACAGCCTTGTTGCTCACACAAAGCCTGTTTGGTGGTCTCCTCACATAGATGAGTGTGAAATTTGGTGCTGTGACTCAGATCAGGGGACCTCCCTTGGGAGATCAATCCCCTGTCCTTCTGCTCTTTGCTCCATGAGAAAGATCCACCTACGACCTCAGGTCCTCAGACTGACCAGCCCAAGGAACATCACACCAATTTTAAATAAGGTAAGCGGCCTCTTTTTACTCTCTTCTCCAACCTCTCTCACTATCCCTCAACCCCACCAGGCCAAGGAATGCCCACGTCCTGGGATTCCTCCTAAGCCATGTCCCATCTGTGTAGGACCCCACTGGAAACTGGACCATCCAACTCTCCCGGCAGCCACTTCCAGAGCCCCTGGAACTCTGGCCCAAGGCTCTCTGACTGACTCCTTCCCAGATCTTCTTGGCTTAGCACCTGAAGACTGATGCTGCTCAATCACCTTGGAAGCCTACAGGACCATCACAGACACTTTCGGTAACTCTTACAGTGGAGGGCTTATTGTAGTTTCTCAAATATTTCTTCCTCCTTTTTCTTTCTTTTCTGTTTTGGACAGGCTGGGGAGTCCTGCTTAAGACATAAATATACATTAGCCCAAAGTTTCTGTAGAGGAAAAGAAAAGAACATCGAAAGCAGAATAATATTTTGAGTAGGTAATTTCTCAGAGTTTGTTGATCCCAGTAGCCCCTGGGGAGTAATGGGATCACCTTAATAATGATAATTTAAAGTTTTCTGGCTCTTGTGTCCCCTCCTCAGAGCTTAGCTAATAATCCCTTCAATGTTTTTTTCTTATCCTACTCTCTCCCTAGAACCCAGACATACATCCATGGCAGGGCCAGACGAACTCAAGTGGCACTTGCCACACTGAACTCAGAATCACTACATGAAGCTTATCGTGCCTGGCTCCTTTTTTGACAAAGTTAAGCTCTCCCAGGAGGCTCCTCAGGTTTTTGCAAGAAGGCTTGGGTTTATTTGCTCCATCAGGTTGGCAAAAATGTTTGGATCACACTTCCACTCAAGCAACATGTCTGGATTCTCAGAGTCTCCTGATGCAAACAGGTAGGTATATCCAGATGTACGAGATGAGACTTATGGAGGCTCACTTGCCCAGAGTTTCTCAGCTGGTCACTTGCTCAGCAGAAGTTGAATTCTTGATCCAGGTCTCTGAAGCATGTGCGAGGTATTGCTCTAAAGTTTGAGTTATGAATTCAAATGTTGTCAGGGCTCAGGTGAGGAAAAGAGTAAAACTGGCTAGGTGGAGACTGAAGATTTGGAAGCAATTTTTGGCATGGAAGAACTTGAGACCAGCATTACCAGATCTTCCCATTTTTCAAGAGAAACTGAAAATATCTTCTCTTTAATGTGAAATCTCTGTATTTAAAATGCTATATATTAATTTTTTTAAATAAACAGGATTTGGGTTAGGCACAATTCTCTGGTTATATCCTCTGATCCAAACCAGGGTTCCACCACCATGATCTCAGCCATGATGTCTCTTTGGCTTCCTCCAATCTGTAAGAAAACCAATCTGGGGACTCTACCAGCGGCTAAGTATGTTTGTTCCAATTATGCAGTCTGGATTTGAAGAAATAACCACAGGATGGGTTCTGGGACCCACCAAATCCACTGTGAGACAGATTTAAGCTGAAACTACATTGATCACCTGACCTCTGTAAGCCTCTACCTGCTCTGACTGGACTGACATTATGGGTCTCCCAGAATCAATATACAGTTGACCCTTGAATAATATGAATTTGAACTACACAAATCCACCTATATGTGGATTTTTTTCAACAAATGCATTAAAAATGTTTTTGCAACAATTTGAAAAAAAC</dnaseq>|
 
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[[Category:Intergenic]]
+
[[Category:Intergenic]][[Category:NONHSAG036456]]

Revision as of 12:35, 13 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT092826

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1884 nt

Genomic location

chr3-:154968295..154998272

Exon number

8

Exons

154968295..154968615,154976408..154976471,154978151..154978412,154982819..154982947,154985187..154985578,154986405..154986575,154996156..154996410,154997983..154998272

Genome context

Sequence
000001 GACTCAGCCC GCCTGCACCC AGGTGAAATA AACAGCCTTG TTGCTCACAC AAAGCCTGTT TGGTGGTCTC CTCACATAGA 000080
000081 TGAGTGTGAA ATTTGGTGCT GTGACTCAGA TCAGGGGACC TCCCTTGGGA GATCAATCCC CTGTCCTTCT GCTCTTTGCT 000160
000161 CCATGAGAAA GATCCACCTA CGACCTCAGG TCCTCAGACT GACCAGCCCA AGGAACATCA CACCAATTTT AAATAAGGTA 000240
000241 AGCGGCCTCT TTTTACTCTC TTCTCCAACC TCTCTCACTA TCCCTCAACC CCACCAGGCC AAGGAATGCC CACGTCCTGG 000320
000321 GATTCCTCCT AAGCCATGTC CCATCTGTGT AGGACCCCAC TGGAAACTGG ACCATCCAAC TCTCCCGGCA GCCACTTCCA 000400
000401 GAGCCCCTGG AACTCTGGCC CAAGGCTCTC TGACTGACTC CTTCCCAGAT CTTCTTGGCT TAGCACCTGA AGACTGATGC 000480
000481 TGCTCAATCA CCTTGGAAGC CTACAGGACC ATCACAGACA CTTTCGGTAA CTCTTACAGT GGAGGGCTTA TTGTAGTTTC 000560
000561 TCAAATATTT CTTCCTCCTT TTTCTTTCTT TTCTGTTTTG GACAGGCTGG GGAGTCCTGC TTAAGACATA AATATACATT 000640
000641 AGCCCAAAGT TTCTGTAGAG GAAAAGAAAA GAACATCGAA AGCAGAATAA TATTTTGAGT AGGTAATTTC TCAGAGTTTG 000720
000721 TTGATCCCAG TAGCCCCTGG GGAGTAATGG GATCACCTTA ATAATGATAA TTTAAAGTTT TCTGGCTCTT GTGTCCCCTC 000800
000801 CTCAGAGCTT AGCTAATAAT CCCTTCAATG TTTTTTTCTT ATCCTACTCT CTCCCTAGAA CCCAGACATA CATCCATGGC 000880
000881 AGGGCCAGAC GAACTCAAGT GGCACTTGCC ACACTGAACT CAGAATCACT ACATGAAGCT TATCGTGCCT GGCTCCTTTT 000960
000961 TTGACAAAGT TAAGCTCTCC CAGGAGGCTC CTCAGGTTTT TGCAAGAAGG CTTGGGTTTA TTTGCTCCAT CAGGTTGGCA 001040
001041 AAAATGTTTG GATCACACTT CCACTCAAGC AACATGTCTG GATTCTCAGA GTCTCCTGAT GCAAACAGGT AGGTATATCC 001120
001121 AGATGTACGA GATGAGACTT ATGGAGGCTC ACTTGCCCAG AGTTTCTCAG CTGGTCACTT GCTCAGCAGA AGTTGAATTC 001200
001201 TTGATCCAGG TCTCTGAAGC ATGTGCGAGG TATTGCTCTA AAGTTTGAGT TATGAATTCA AATGTTGTCA GGGCTCAGGT 001280
001281 GAGGAAAAGA GTAAAACTGG CTAGGTGGAG ACTGAAGATT TGGAAGCAAT TTTTGGCATG GAAGAACTTG AGACCAGCAT 001360
001361 TACCAGATCT TCCCATTTTT CAAGAGAAAC TGAAAATATC TTCTCTTTAA TGTGAAATCT CTGTATTTAA AATGCTATAT 001440
001441 ATTAATTTTT TTAAATAAAC AGGATTTGGG TTAGGCACAA TTCTCTGGTT ATATCCTCTG ATCCAAACCA GGGTTCCACC 001520
001521 ACCATGATCT CAGCCATGAT GTCTCTTTGG CTTCCTCCAA TCTGTAAGAA AACCAATCTG GGGACTCTAC CAGCGGCTAA 001600
001601 GTATGTTTGT TCCAATTATG CAGTCTGGAT TTGAAGAAAT AACCACAGGA TGGGTTCTGG GACCCACCAA ATCCACTGTG 001680
001681 AGACAGATTT AAGCTGAAAC TACATTGATC ACCTGACCTC TGTAAGCCTC TACCTGCTCT GACTGGACTG ACATTATGGG 001760
001761 TCTCCCAGAA TCAATATACA GTTGACCCTT GAATAATATG AATTTGAACT ACACAAATCC ACCTATATGT GGATTTTTTT 001840
001841 CAACAAATGC ATTAAAAATG TTTTTGCAAC AATTTGAAAA AAAC
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Predicted Small Protein

Name NONHSAT092826_smProtein_932:1111
Length 60
Molecular weight 6606.5941
Aromaticity 0.118644067797
Instability index 56.1694915254
Isoelectric point 10.020324707
Runs 8
Runs residual 0.00886331830197
Runs probability 0.0406951068715
Amino acid sequence MKLIVPGSFFDKVKLSQEAPQVFARRLGFICSIRLAKMFGSHFHSSNMSGFSESPDANR
Secondary structure LEEEELLLLLLLLLLLLLHHHHHHHHHLLEEHHHHHHHHLLLLLLLLLLLLLLLLLLLL
PRMN -
PiMo -