Difference between revisions of "NONHSAT135334"
(Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>CTCTCTCCCTCTCCCTCTCTCCCTCTCCCTCTCTCCTCTCTCTCCTCTCTCCTCTCTCTCCTCTCTCCTCTCTCTCCTCTCTCCTCTCTCTCTGCTGGCTGGCTGGCTGTCTAGGCCTATGTGTCACCACCTGGCACTTGCTCTCATTGTCTTGTGCGAGTGCTTTTGCCAGCAGTTTGGAGTGCAGACCCATCACCCCTCACTGGGGCCCCCCATGAGGCCTGCCTGACTGCATGCCCCACCCGGGCCCATGGCAGCGCACCTGGAAGCGGACGGCTGAGGACTTGTTGCAGTGCATGGAGATGGGCGCGAAGCTGTACAGGGCCTTCAGTACGTCGCGGTTGAAGGAGTTCCAGGGAACAGAGGTGAACTGCTGAGACACGGACGCCTGAGGGCAGGTGCAGACATCCTCGTTGTTGAACCTGGCGGGGACAAGGAACAGCCAGGCTGGGGAGCAGCTGACGGGCAGGGAGCCCAGTGGGCACCAGCAACACCTCCCTGCAACTCGAGTCCTGTCCCTGGGGCAACCGTCCTGCCACCTCCTCCCCAGCCCCGCTGCCTCCGCCAGGCCACCCCAGATGCTGCCTTCACCGGCAACGGCCTCACCTCTCCTGTCACCTTGGCGGGTGGGTAATGGCTGCTGCAGGCTGGGTTGAGGAGGCTCTGAAGCCAAATCCAGACTCAGCAGGAAACGAGTGAGGGGAGGGGTGAGTGATGCCGCCACAGGTCTCTGCTCCTAGAACTTAGCCTGGACTCCTCCAATCTGCCCAGCCGCCTAACAGGCCCGAGGTTCTGTGTCGGGGTTCCCTGGGGGCAGGGAGCTTGTGCAGGGAGCCCTCACCTGTTGATGAGGTGGAAGTACTTCTGCAGGAAGCCGGCGTCCACAGCGCTCTTGCAGAGCTCCAGCTGCGTCTGGGGGTAGTAGTGCACGTAGTTGACACACATCTCCTCCAGGATCCCGAAGCCCCCCTGCAAGTTGGAGGAGACCCGTCAGCCCCGGGCCATGCCACGCAGACGCTGCCATCCAGCAGCTTTCGCCGCACCCACGTGTACACTGCGTCCACTCGTCTGTTCACTGCACCGTGCCAGGCATGCTCTGGGGAACCGAGTCCCTGCCCTCAAGGAATTGCCACCATTGGCAGGAGAGACAGGCAGTGAGTGAGTGAGTCAACCAGGAAATTCGTATCAGGTACTGATGATGCTGTGAGGAAAAATGAAACGGGACAAGCGGATGGGGTGTTATTGTGCCCATTTTATGGGTACAGAAACTGAGTCTCAGAGCAGGCAAGGGGATGCCCCGTGGTGGCCACAGCATCGGTGGCACAGCCTGAGTGCACCCAGCGTCCCGGCCATTGTCTGGAAGCTGTCCCCATGACCTCCAGCGAGAGCCTGGAGCCAAGGACTGCAAGGGAGGCCCTTTCCACTGCAGCCCCGCACCGTCCACCAGTCATTTCTCCAACGTGGCTCTGAGGGGAGCAGGGACTCTATAAGACAGGACCGTGACTAGAGGCCGCGACAACCTCCAGCCTCTCACGGCAACCCTACGGCCTGCCATCGCATGGGAGGGGCAGGGCAGGCACCCTCTGAGTCCCCACTGCCAGCTTTAAGCCCCTCGCTGGGTTGCTGCTCTTGGAGCTGGTGACCGTGGAGCCTCAGCCATAGGAGGAAGAACAGCAGCAGCTTGGAGGAGCTGGGGCTGGAGAGAGCAAAGCTCCCCCGGCAGCAGCTCAGATCCCAGCAGGTCAGGGGCCGGGACATGACGCCCTGGCCACCCTTGCCCCTCCAGGCTCCCCGCTGTTTGTGAAGCTGCTGTGGGCCTGGGGATTTCATCTGGCTGGTGGGGAAGAAAGGCAATCTTTACTCTATGGCAGAACAAAGGGACTGGGCAAAGCTTGGCGTGGCACTTACACCAGCTGCCGCCCCCTCCTCCCGTGCAGACAAAGAGCATGGGGCAGTTCTGCCCAGAGACGAAACCTGGCACCTGTTGGCCAGGACGCGTTTTTGCCAGCATTGTTCTCTGGGCCGGATTCCTCCTTTCCCAGCTTTTCTCATCCATCCCGCCCCCGTCAGATCGGGACGATTGCCCTCCTGTGTGAGTTCCTGTCCCTCCCCACCCTCTGCCACCACAGACATCAAAAGGGAACTGAGTCCGACCCTGTGTAGAATCTGTTCTCCTCTTTCACCTGGGGAAGGAAATCGAATTTCAAAGGCCACTGTGTCTTGGATCAGCAGGCGAGGGCTTGTCAGAGTGTGAGAAGCTCAGGTCCACCTGGGGAGCTGCCCTCCCCTTTGATCCCACCTGGTGCTGTGATGTGGCCACTGCCAAGAGGAGGACATGGGCCAGGGAAGCCACAGAACTGCCCACGGGGACGCTGGCACCGAGGGCCTCAACCTGCAGAACGGCCATCTGAGATGTCCGCGGTGCTCACCAGGCCTGGCAGCCCCGAACGCCCTGGGACGTGGCGTCAGTTCCGCCGCCGTGAAGCCAGATTGGGCAGGGAATATGCAGTCTCCTCGCTGGATGCCCGGCAAGACCCTCCCATCCCTGGCCCCGGGGCCGCGCCTGCAGAATGGGGCTGATGGTGGGGACTTGCCTGGGGTGCTCCACCTGCAGAGCCCTCTGTTTGCGAGCCCACTCAGTCACTGCACAGGTGCTTAGCCGAGAGGCGGCACAGTCGGGGTTGGCACCTGCACCCATACCAGCCCTGCCTCCTGTTCGCTGTGTGGCCTGAGTGGCTGGACCTCACTGTATCTCCTGGTGGGATTGCTCAGAGGTCTCAGCAAGGCTTGGTGTGGTTAGGATGAGTTATTAGAGCAGTGCTGAGCTGTGGCAAGCACCCGACATCAGCCACTGCTGTGATATACTGAGCACCTCCTCTAGAGAGAATAAAGGACTGACAAAGCTG</dnaseq>| | sequence = <dnaseq>CTCTCTCCCTCTCCCTCTCTCCCTCTCCCTCTCTCCTCTCTCTCCTCTCTCCTCTCTCTCCTCTCTCCTCTCTCTCCTCTCTCCTCTCTCTCTGCTGGCTGGCTGGCTGTCTAGGCCTATGTGTCACCACCTGGCACTTGCTCTCATTGTCTTGTGCGAGTGCTTTTGCCAGCAGTTTGGAGTGCAGACCCATCACCCCTCACTGGGGCCCCCCATGAGGCCTGCCTGACTGCATGCCCCACCCGGGCCCATGGCAGCGCACCTGGAAGCGGACGGCTGAGGACTTGTTGCAGTGCATGGAGATGGGCGCGAAGCTGTACAGGGCCTTCAGTACGTCGCGGTTGAAGGAGTTCCAGGGAACAGAGGTGAACTGCTGAGACACGGACGCCTGAGGGCAGGTGCAGACATCCTCGTTGTTGAACCTGGCGGGGACAAGGAACAGCCAGGCTGGGGAGCAGCTGACGGGCAGGGAGCCCAGTGGGCACCAGCAACACCTCCCTGCAACTCGAGTCCTGTCCCTGGGGCAACCGTCCTGCCACCTCCTCCCCAGCCCCGCTGCCTCCGCCAGGCCACCCCAGATGCTGCCTTCACCGGCAACGGCCTCACCTCTCCTGTCACCTTGGCGGGTGGGTAATGGCTGCTGCAGGCTGGGTTGAGGAGGCTCTGAAGCCAAATCCAGACTCAGCAGGAAACGAGTGAGGGGAGGGGTGAGTGATGCCGCCACAGGTCTCTGCTCCTAGAACTTAGCCTGGACTCCTCCAATCTGCCCAGCCGCCTAACAGGCCCGAGGTTCTGTGTCGGGGTTCCCTGGGGGCAGGGAGCTTGTGCAGGGAGCCCTCACCTGTTGATGAGGTGGAAGTACTTCTGCAGGAAGCCGGCGTCCACAGCGCTCTTGCAGAGCTCCAGCTGCGTCTGGGGGTAGTAGTGCACGTAGTTGACACACATCTCCTCCAGGATCCCGAAGCCCCCCTGCAAGTTGGAGGAGACCCGTCAGCCCCGGGCCATGCCACGCAGACGCTGCCATCCAGCAGCTTTCGCCGCACCCACGTGTACACTGCGTCCACTCGTCTGTTCACTGCACCGTGCCAGGCATGCTCTGGGGAACCGAGTCCCTGCCCTCAAGGAATTGCCACCATTGGCAGGAGAGACAGGCAGTGAGTGAGTGAGTCAACCAGGAAATTCGTATCAGGTACTGATGATGCTGTGAGGAAAAATGAAACGGGACAAGCGGATGGGGTGTTATTGTGCCCATTTTATGGGTACAGAAACTGAGTCTCAGAGCAGGCAAGGGGATGCCCCGTGGTGGCCACAGCATCGGTGGCACAGCCTGAGTGCACCCAGCGTCCCGGCCATTGTCTGGAAGCTGTCCCCATGACCTCCAGCGAGAGCCTGGAGCCAAGGACTGCAAGGGAGGCCCTTTCCACTGCAGCCCCGCACCGTCCACCAGTCATTTCTCCAACGTGGCTCTGAGGGGAGCAGGGACTCTATAAGACAGGACCGTGACTAGAGGCCGCGACAACCTCCAGCCTCTCACGGCAACCCTACGGCCTGCCATCGCATGGGAGGGGCAGGGCAGGCACCCTCTGAGTCCCCACTGCCAGCTTTAAGCCCCTCGCTGGGTTGCTGCTCTTGGAGCTGGTGACCGTGGAGCCTCAGCCATAGGAGGAAGAACAGCAGCAGCTTGGAGGAGCTGGGGCTGGAGAGAGCAAAGCTCCCCCGGCAGCAGCTCAGATCCCAGCAGGTCAGGGGCCGGGACATGACGCCCTGGCCACCCTTGCCCCTCCAGGCTCCCCGCTGTTTGTGAAGCTGCTGTGGGCCTGGGGATTTCATCTGGCTGGTGGGGAAGAAAGGCAATCTTTACTCTATGGCAGAACAAAGGGACTGGGCAAAGCTTGGCGTGGCACTTACACCAGCTGCCGCCCCCTCCTCCCGTGCAGACAAAGAGCATGGGGCAGTTCTGCCCAGAGACGAAACCTGGCACCTGTTGGCCAGGACGCGTTTTTGCCAGCATTGTTCTCTGGGCCGGATTCCTCCTTTCCCAGCTTTTCTCATCCATCCCGCCCCCGTCAGATCGGGACGATTGCCCTCCTGTGTGAGTTCCTGTCCCTCCCCACCCTCTGCCACCACAGACATCAAAAGGGAACTGAGTCCGACCCTGTGTAGAATCTGTTCTCCTCTTTCACCTGGGGAAGGAAATCGAATTTCAAAGGCCACTGTGTCTTGGATCAGCAGGCGAGGGCTTGTCAGAGTGTGAGAAGCTCAGGTCCACCTGGGGAGCTGCCCTCCCCTTTGATCCCACCTGGTGCTGTGATGTGGCCACTGCCAAGAGGAGGACATGGGCCAGGGAAGCCACAGAACTGCCCACGGGGACGCTGGCACCGAGGGCCTCAACCTGCAGAACGGCCATCTGAGATGTCCGCGGTGCTCACCAGGCCTGGCAGCCCCGAACGCCCTGGGACGTGGCGTCAGTTCCGCCGCCGTGAAGCCAGATTGGGCAGGGAATATGCAGTCTCCTCGCTGGATGCCCGGCAAGACCCTCCCATCCCTGGCCCCGGGGCCGCGCCTGCAGAATGGGGCTGATGGTGGGGACTTGCCTGGGGTGCTCCACCTGCAGAGCCCTCTGTTTGCGAGCCCACTCAGTCACTGCACAGGTGCTTAGCCGAGAGGCGGCACAGTCGGGGTTGGCACCTGCACCCATACCAGCCCTGCCTCCTGTTCGCTGTGTGGCCTGAGTGGCTGGACCTCACTGTATCTCCTGGTGGGATTGCTCAGAGGTCTCAGCAAGGCTTGGTGTGGTTAGGATGAGTTATTAGAGCAGTGCTGAGCTGTGGCAAGCACCCGACATCAGCCACTGCTGTGATATACTGAGCACCTCCTCTAGAGAGAATAAAGGACTGACAAAGCTG</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Antisense]] | + | [[Category:Antisense]][[Category:NONHSAG053703]] |
Revision as of 12:38, 13 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT135334 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
antisense |
| Length |
2906 nt |
| Genomic location |
chr9-:136519708..136522653 |
| Exon number |
2 |
| Exons |
136519708..136522571,136522611..136522653 |
| Genome context |
|
| Sequence |
000001 CTCTCTCCCT CTCCCTCTCT CCCTCTCCCT CTCTCCTCTC TCTCCTCTCT CCTCTCTCTC CTCTCTCCTC TCTCTCCTCT 000080
000081 CTCCTCTCTC TCTGCTGGCT GGCTGGCTGT CTAGGCCTAT GTGTCACCAC CTGGCACTTG CTCTCATTGT CTTGTGCGAG 000160 000161 TGCTTTTGCC AGCAGTTTGG AGTGCAGACC CATCACCCCT CACTGGGGCC CCCCATGAGG CCTGCCTGAC TGCATGCCCC 000240 000241 ACCCGGGCCC ATGGCAGCGC ACCTGGAAGC GGACGGCTGA GGACTTGTTG CAGTGCATGG AGATGGGCGC GAAGCTGTAC 000320 000321 AGGGCCTTCA GTACGTCGCG GTTGAAGGAG TTCCAGGGAA CAGAGGTGAA CTGCTGAGAC ACGGACGCCT GAGGGCAGGT 000400 000401 GCAGACATCC TCGTTGTTGA ACCTGGCGGG GACAAGGAAC AGCCAGGCTG GGGAGCAGCT GACGGGCAGG GAGCCCAGTG 000480 000481 GGCACCAGCA ACACCTCCCT GCAACTCGAG TCCTGTCCCT GGGGCAACCG TCCTGCCACC TCCTCCCCAG CCCCGCTGCC 000560 000561 TCCGCCAGGC CACCCCAGAT GCTGCCTTCA CCGGCAACGG CCTCACCTCT CCTGTCACCT TGGCGGGTGG GTAATGGCTG 000640 000641 CTGCAGGCTG GGTTGAGGAG GCTCTGAAGC CAAATCCAGA CTCAGCAGGA AACGAGTGAG GGGAGGGGTG AGTGATGCCG 000720 000721 CCACAGGTCT CTGCTCCTAG AACTTAGCCT GGACTCCTCC AATCTGCCCA GCCGCCTAAC AGGCCCGAGG TTCTGTGTCG 000800 000801 GGGTTCCCTG GGGGCAGGGA GCTTGTGCAG GGAGCCCTCA CCTGTTGATG AGGTGGAAGT ACTTCTGCAG GAAGCCGGCG 000880 000881 TCCACAGCGC TCTTGCAGAG CTCCAGCTGC GTCTGGGGGT AGTAGTGCAC GTAGTTGACA CACATCTCCT CCAGGATCCC 000960 000961 GAAGCCCCCC TGCAAGTTGG AGGAGACCCG TCAGCCCCGG GCCATGCCAC GCAGACGCTG CCATCCAGCA GCTTTCGCCG 001040 001041 CACCCACGTG TACACTGCGT CCACTCGTCT GTTCACTGCA CCGTGCCAGG CATGCTCTGG GGAACCGAGT CCCTGCCCTC 001120 001121 AAGGAATTGC CACCATTGGC AGGAGAGACA GGCAGTGAGT GAGTGAGTCA ACCAGGAAAT TCGTATCAGG TACTGATGAT 001200 001201 GCTGTGAGGA AAAATGAAAC GGGACAAGCG GATGGGGTGT TATTGTGCCC ATTTTATGGG TACAGAAACT GAGTCTCAGA 001280 001281 GCAGGCAAGG GGATGCCCCG TGGTGGCCAC AGCATCGGTG GCACAGCCTG AGTGCACCCA GCGTCCCGGC CATTGTCTGG 001360 001361 AAGCTGTCCC CATGACCTCC AGCGAGAGCC TGGAGCCAAG GACTGCAAGG GAGGCCCTTT CCACTGCAGC CCCGCACCGT 001440 001441 CCACCAGTCA TTTCTCCAAC GTGGCTCTGA GGGGAGCAGG GACTCTATAA GACAGGACCG TGACTAGAGG CCGCGACAAC 001520 001521 CTCCAGCCTC TCACGGCAAC CCTACGGCCT GCCATCGCAT GGGAGGGGCA GGGCAGGCAC CCTCTGAGTC CCCACTGCCA 001600 001601 GCTTTAAGCC CCTCGCTGGG TTGCTGCTCT TGGAGCTGGT GACCGTGGAG CCTCAGCCAT AGGAGGAAGA ACAGCAGCAG 001680 001681 CTTGGAGGAG CTGGGGCTGG AGAGAGCAAA GCTCCCCCGG CAGCAGCTCA GATCCCAGCA GGTCAGGGGC CGGGACATGA 001760 001761 CGCCCTGGCC ACCCTTGCCC CTCCAGGCTC CCCGCTGTTT GTGAAGCTGC TGTGGGCCTG GGGATTTCAT CTGGCTGGTG 001840 001841 GGGAAGAAAG GCAATCTTTA CTCTATGGCA GAACAAAGGG ACTGGGCAAA GCTTGGCGTG GCACTTACAC CAGCTGCCGC 001920 001921 CCCCTCCTCC CGTGCAGACA AAGAGCATGG GGCAGTTCTG CCCAGAGACG AAACCTGGCA CCTGTTGGCC AGGACGCGTT 002000 002001 TTTGCCAGCA TTGTTCTCTG GGCCGGATTC CTCCTTTCCC AGCTTTTCTC ATCCATCCCG CCCCCGTCAG ATCGGGACGA 002080 002081 TTGCCCTCCT GTGTGAGTTC CTGTCCCTCC CCACCCTCTG CCACCACAGA CATCAAAAGG GAACTGAGTC CGACCCTGTG 002160 002161 TAGAATCTGT TCTCCTCTTT CACCTGGGGA AGGAAATCGA ATTTCAAAGG CCACTGTGTC TTGGATCAGC AGGCGAGGGC 002240 002241 TTGTCAGAGT GTGAGAAGCT CAGGTCCACC TGGGGAGCTG CCCTCCCCTT TGATCCCACC TGGTGCTGTG ATGTGGCCAC 002320 002321 TGCCAAGAGG AGGACATGGG CCAGGGAAGC CACAGAACTG CCCACGGGGA CGCTGGCACC GAGGGCCTCA ACCTGCAGAA 002400 002401 CGGCCATCTG AGATGTCCGC GGTGCTCACC AGGCCTGGCA GCCCCGAACG CCCTGGGACG TGGCGTCAGT TCCGCCGCCG 002480 002481 TGAAGCCAGA TTGGGCAGGG AATATGCAGT CTCCTCGCTG GATGCCCGGC AAGACCCTCC CATCCCTGGC CCCGGGGCCG 002560 002561 CGCCTGCAGA ATGGGGCTGA TGGTGGGGAC TTGCCTGGGG TGCTCCACCT GCAGAGCCCT CTGTTTGCGA GCCCACTCAG 002640 002641 TCACTGCACA GGTGCTTAGC CGAGAGGCGG CACAGTCGGG GTTGGCACCT GCACCCATAC CAGCCCTGCC TCCTGTTCGC 002720 002721 TGTGTGGCCT GAGTGGCTGG ACCTCACTGT ATCTCCTGGT GGGATTGCTC AGAGGTCTCA GCAAGGCTTG GTGTGGTTAG 002800 002801 GATGAGTTAT TAGAGCAGTG CTGAGCTGTG GCAAGCACCC GACATCAGCC ACTGCTGTGA TATACTGAGC ACCTCCTCTA 002880 002881 GAGAGAATAA AGGACTGACA AAGCTG |
Predicted Small Protein
| Name | NONHSAT135334_smProtein_2570:2731 |
| Length | 54 |
| Molecular weight | 5349.3953 |
| Aromaticity | 0.0 |
| Instability index | 48.279245283 |
| Isoelectric point | 8.82879638672 |
| Runs | 9 |
| Runs residual | 0.00954901058444 |
| Runs probability | 0.0179983905474 |
| Amino acid sequence | MGLMVGTCLGCSTCRALCLRAHSVTAQVLSREAAQSGLAPAPIPALPPVRCVA |
| Secondary structure | LLLEEELLLLHHHHHHHHHHLLLHHHHHHHHHHHHLLLLLLLLLLLLLLLEEL |
| PRMN | - |
| PiMo | - |
