NONHSAT061380
Revision as of 22:47, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT061380 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2095 nt |
Genomic location |
chr19-:14207183..14209277 |
Exon number |
1 |
Exons |
14207183..14209277 |
Genome context |
|
Sequence |
000001 acacacatat ctacatacat acagaggtga ggtcttgcct atattgccca ggctggtctc gaactcctgg gctcaagcga 000080
000081 tcttcccacc tcgacccccc aaaatgctgg gattacaggg gtgagccacc gcaccgggcc GAATccctct cttgacacgt 000160 000161 cacctcccca ccaaaggcag ttgtcctttc tgacttcaaa caccgtgcct ttgttttgtc tgggcgtgga catgatataa 000240 000241 atggaatcat tcatgttctt ttgtgtcttc ttttgcttaa cataatcagt ttgaaatgca gccacattgt tgagtggatg 000320 000321 catgggctgt cctgttggcg gtggtggtgg tgagtggaat tccattgtat gactatagct cagtctgtga ttccattttc 000400 000401 ctgtggatgg acccacaggc tgtttcccat gtcgggctat ctaagaatCA GGTGCCTTGC GTTTCTGACG GCTGGACTGG 000480 000481 AGGTGTCTTC CTCTGGGGTA GGCTCTGCAG GGCCACCTGC TGGACCATTT TGGGGCATGA CCACTGACGT TCACCTCCCC 000560 000561 ATTTGTCCCC ATCAGTGAGC CCCATGCCCG TTTCTACGCG GCCCAGATCG TCCTGACCTT TGAGTATCTG CACTCGCTGG 000640 000641 ATCTCATCTA CAGGGACCTG AAGCCGGAGA ATCTGCTCAT TGACCAGCAG GGCTACATTC AGGTGCCCAC CAGGCCGGGC 000720 000721 GAGGGGCAGC CCTGGGGAAG CCGTGGCCTG GACCCTTCCT CCCTGCCAAC TGCCTGTTCT TGTGCCCACA GGTGACAGAC 000800 000801 TTCGGTTTCG CCAAGCGCGT GAAGGGCCGC ACTTGGACCT TGTGCGGCAC CCCTGAGTAC CTGGCCCCTG AGATTATCCT 000880 000881 GAGCAAAGTA GGAGCCTCCC CAGCCCTCCC CTTCCCCTGA GGCCGGCTCT GCTCTCCTGC TCTCGCCTCC TCCTCACCCT 000960 000961 GTGCCCCCCC ATCTTGCTCC AGGGCTACAA CAAGGCCGTG GACTGGTGGG CCCTGGGGGT TCTTATCTAT GAAATGGCCG 001040 001041 CTGGCTACCC GCCCTTCTTC GCAGACCAGC CCATCCAGAT CTATGAGAAG ATCGTCTCTG GGAAGGTGAG GTCCGGATGt 001120 001121 ggggacacag ccctggaaga aacagaccgt tccctgctca cccatcctat tccctgggga gccctgcttg ttgtcagaat 001200 001201 aatctagaAG TTCCTTAAGT CAGGCCAGGT GGTGAAGCTG GACGCGCCGG CCACACTGAG GCCAACACCT CAAGCCCCCT 001280 001281 TGCTGTCCAG CCCCAACCCC GCGGTTCCAG AATCCCATGG GCTTCCAAAA TCCCGAGCCT CACGGGAACA TCTTGGCCAC 001360 001361 AGAACACAAA CCGCCCTGCC AGACGACCCT CCTTTTCGCT CCtcatccca gttagtgtga gttttcgcaa attccaaggc 001440 001441 agaaaaacga atgtatttgg ttcctgttcc caggtgctgt ccATAGCCTC ACCCAGGATT GCCCTCACTT AGCATTTATA 001520 001521 GCCCATGCTT CCTCTCCCAA ACCCAGACTT GCCTAACTCT GAGGGTTCAG ATGAGGGGTG GTGAAGCCAT CTCAGCTCAC 001600 001601 ATCTATGACA Ggtgcaaagt gcccaccatc caccaggccc cagaatcccc atcagtcaca ccctgagata gtggcaccct 001680 001681 ctgtaggaga ggtgaggaaa caggctggga aaagggatgt gtcttggcca agatcacact ttggtgagta gGTAATCACC 001760 001761 GTAGGCAATC ATTGTAGGCA CTGATGGCCG GAGAGAGGTT GGGGACCCCA CCTCTGCCCT CAGCTCAACC ACCTTGCTGG 001840 001841 GAAGACCCGA CCATCCCCCG ACTTGGTCCA GCATCTCCTA CACAGGAGCT TTTGGTTGGC CCGGAGTCAt gacactgtgg 001920 001921 tgggagcacc ctcaggctca gcctgggccc cagtcccagc tctgccaccg actggctttg aaactttggg gctgggtaca 002000 002001 atggctcaca cctgtaatgc cagcaccttg ggaagtggag gcttgaggcc aggagttcca gaccagcctg ggcaacatag 002080 002081 ccagacccca tctct |
Predicted Small Protein
Name | NONHSAT061380_smProtein_368:577 |
Length | 70 |
Molecular weight | 7360.5219 |
Aromaticity | 0.101449275362 |
Instability index | 51.3217391304 |
Isoelectric point | 7.79705810547 |
Runs | 9 |
Runs residual | 0.0088965418281 |
Runs probability | 0.034034034034 |
Amino acid sequence | MTIAQSVIPFSCGWTHRLFPMSGYLRIRCLAFLTAGLEVSSSGVGSAGPPAGPFWGMTTD VHLPICPHQ |
Secondary structure | LEEEEEEEELLLLLLLEEELLLHHHHHHHHHHHHLLEEEELLLLLLLLLLLLLLLLLLLL LLLLLLLLL |
PRMN | - |
PiMo | - |