NONHSAT107641
Revision as of 01:44, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT107641 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1667 nt |
Genomic location |
chr6+:8652443..8657660 |
Exon number |
3 |
Exons |
8652443..8652623,8653778..8655017,8657415..8657660 |
Genome context |
|
Sequence |
000001 tgggggtgga actcatgatg gaattggagc ctttacaagg gaatgaagag acaagagctc tctttatgcc acgtgaggat 000080
000081 acagcaaggc cccaatctgc aagccaggaa gagtcgtcac gagaaccaga ccatgcagga actctgatcg tggacatttc 000160 000161 aacctccaga actgtgatcc aAAATGCATA TGTATCTTTG GAAGAAACTC TGAAGTAAAG GCCGGAATAT TCTTTGTTTA 000240 000241 AAACATTAAA AACAAAACAG ACCAAAGCAT CAAGCAAGAA GTTTCCTGGC AATAAACTAA GCACAGCATT ATTTTTTAAG 000320 000321 GAACACAAAT TAAGTGTTCA ACCTGTGGCA AATTTGTACT TTCTCCCTGA ATTATGTTGT TATCAAAGAA AAAAATTGGG 000400 000401 AAGCATGGCA AAATATCATC AAAACTGaaa ctagaattaa acaaaactaa attaaaatga aataaaatga TGTCCATTCT 000480 000481 TAATTCATCC TCACAACTGG GCCACTAGTT TTATGCATCT TGGCAGCCAA TATTTTTGTC TCTAGGGCAT AAATTATGCA 000560 000561 TCAGGTACCT CTGAAACTCA GAGACCAAGG AAAAAGGAGG TAATTTGGAA GGTGAAATAA ATGTAAACAT TCTGAAGAAA 000640 000641 GAATCAAATC TGTACTTCAG GGTCAAAGAT GAAATTCAAA AGGGGTTGAC AATGCATAGA AAAAAGTGCT GAATTTAAAG 000720 000721 TTGGTTTTAT TATTATCATT GTTATTTGAA CCAATAATTA AATCCAGTAA GTCTAGAGCA ATGATCATAA TTCTGTACTG 000800 000801 TTGTTTTTCT ATTTTAGAAT CCAGTGTACT GTTTCCAAGA GCTTGGCaaa aaaaaaaaaa aaaaaaaaaa aaaagaaaaa 000880 000881 GGAGCTTGAC TCTAAATCTC TAAATCTTGG AGTCTGGATG CACTATTCAT GTGATAGGCT AAAATAACTA CTAATACCTT 000960 000961 ATGTTCAAAC AGCACTTTAT GAAGTGATTA CACATAAAAG ATCTTTTTTG ATATAACTGT TATACGGCAT ATCTTCCATT 001040 001041 TTATAGACAG GGTGAGTTGT TTGATGCGTA AGATGAGCTG AAATAGGAAA AGTGACAGAA AATTTACAGA CCTATGGAAT 001120 001121 AATATTCCAC AATGGGGTAT TCTTTATAAT TATCTGGGCT GAATAGCACC ATCCAAAGTT CTTAAATCAT CAACAATGCC 001200 001201 ATTTTTACTG TAGAGGAGAA GAGTTATGAT CCTTTGACTC TTTAAATTTT CTTCCTTGAC AAAAGTGATC TACCTTTCTA 001280 001281 GCCAACCTGT CTCAATGATC CATAATGTTG CTACCCTGGT GCCAGATGGA TATGATAGAA GGCTCCTAAA AGGCTCTTGG 001360 001361 TTTGAGGAAA GTGTTGCTTA CATACAACAG GAATCTTGTG GGATTTAAGA AGTGGGGAGA TGTGGAAGTG TAGCCACTCT 001440 001441 CTTTTTCATT CTACCAGTTG CTATTTCAAT CTTTTTCAAG AGAAGGCTAA AATTTTAAGA GAAGGCTAAA ATTTTATGTA 001520 001521 ACTATCAAGG AGAGGAACAA AATTATGGCT TTTAATGCTC CCTTTGGGAA GGTCAAGAAT TTGGAGCTTT TATATTTCTC 001600 001601 TTTCTTCTTA ATTTAGGTCT TGATCAATAT AACTGGAGCC TGTGGGGTAT GTGTGTATAA AATAAAG |
Predicted Small Protein
Name | NONHSAT107641_smProtein_14:217 |
Length | 68 |
Molecular weight | 7535.2434 |
Aromaticity | 0.0298507462687 |
Instability index | 61.8149253731 |
Isoelectric point | 4.44122314453 |
Runs | 9 |
Runs residual | 0.00898648120653 |
Runs probability | 0.0457712614576 |
Amino acid sequence | MMELEPLQGNEETRALFMPREDTARPQSASQEESSREPDHAGTLIVDISTSRTVIQNAYV SLEETLK |
Secondary structure | LLLLLLLLLLHHHHHEELLLLLLLLLLLLLLLLLLLLLLLLLEEEEEELLLLLEEEEEEE EHHHLLL |
PRMN | - |
PiMo | - |