NONHSAT054926

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT054926

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

3526 nt

Genomic location

chr17+:56084709..56088234

Exon number

1

Exons

56084709..56088234

Genome context

Sequence
000001 GGTGCTGCGA GGGCTACGTT CAGCGCACGC GCACGCACGC GCGACGTCAC CCTCCCCACG AAGGGGGTAA AAAAGTCCCC 000080
000081 CGCGTTCCCA GCTTGGGGTG GTTTGCGAAC AGAGTGACCA GCCGTTTGGT AAAAGTTAAA TAACGAACTT TCGTTAAAGG 000160
000161 AGCTAGTCAT CCAGGTCGGG TCTTGAAGGA TGGTCGATTT CTCCAGGAAT GAGGATCTTT GAAAGCAACT CGGCGCCTTC 000240
000241 AAAGCACTTG GTGAAACCTA GCCTAAAGCG TTGTCCCACC ATGCTCTGCG GCGATAACGG CCTTTGGCGG GAAAGAGTCT 000320
000321 CGGAGGCGGG GCCAAAGGGG GACGGCCCGG GCGGTTGCTC CGGAAACCCG GGTATCTTCG TAGGGTGCGT CTAATCCAGA 000400
000401 GCTGAGTTGC GGGTGATTGA ACGGAGAGCT GGGGCGTTGG TTTGTCTTCC CGCCCCTGCT GCGAATAGAC CGTGGCTGCT 000480
000481 TAGACAGATG TGTCTAATTT AGCGAAACCG ATTTAGATTC CTTAATCCTC TTCATTAAGT ACCGTTCCGC CTTCTCGTCA 000560
000561 GAACTTTGCA TAGCTCGGGT CAGCACTCCT AGTGCTAGTC GCAGTGGGTC CGTATCCCGA CCGGCAACGT GGTACCCGCC 000640
000641 AACCAGAAGG GGTAACACCG TACCGCCTAT GGGACCCACA CCTTTTTATC TCTTGTTAGT CGCCTGTCCG TGGGACTAGC 000720
000721 GCAGAATGCC TGCAGAATGA ATCGTTTCTG TTGTTTCCTT TCAAAGAACG AGAAGGAAGA AAGGGTGCGT GTGTGCAGTC 000800
000801 CTTTTTTCAA AAGTTTTCCC TAAAAGTTAC TGATACACCA GGTTTTGAAA ATACCGGTCC TCTCAGGTAA TAAAATGGAG 000880
000881 CAAAATGGAT GTGAGAACCG TAACCACTAG ATACCGCGGT TGCTATTCAG GACTGTGATC CTGTTTGCCT GCGGCATTGG 000960
000961 GAGATAACAT TTTACATTTt ttttcgacgt ctgaaatctg gatttttatg tgaaatcctg ggatttttaa acgtcgctaa 001040
001041 tgaattaaaa TTCAAATCAg gctgggcgcg gtggctcacg ccagcacttt gggaggccga ggcggttgga tcacttgagg 001120
001121 tcaggaattc gagaccagcc tggccaacat ggtgaaatcc cgtctctact gaaaaaacaa aaaattagcc gggcttggtg 001200
001201 gcaggcgcct gtaatccact ctacgcggga ggctgaggca ggagaatcgc tagaaccctg gaggcggagg ttgcagtgag 001280
001281 ctgagatggc gccattgcac tgcagcctgg gctacagagt gagactcctc caaaaaaaaa aaaaaGGAGG GGGAAACAAC 001360
001361 AACAAATTAA AATCAAACCC TGCAGTCATA AATTTGCCAT AACAGATCTA CACACTGAAT TTAAGGGATA ATTTTCTTCA 001440
001441 TGttatttat ttacagtagt ccctttccgc aaggatgtga ggcaacttac agagatacca taaaacatga aaactagatg 001520
001521 aggctgggcg tggtggctca ctcctgtaat cccagcactt tgggaggccg aggcgggcgg atcacctgag gtcaggagtc 001600
001601 ggagaccaac atgtcgaaac ccgtatcttc taaaaataca aaacattagc tgggtatggt ggcgcgtgcc tgtaatccca 001680
001681 gctactcggt agggtgagac aggacaatct cttgaaccct taggaggtgg aggctgcagt gagcggaaat cacgccactg 001760
001761 cactccagcc tgggtgacag aacaagactc catctcacac acacacaaaa aaaatgctag agtaagaaat cagaggaatg 001840
001841 ggaaaatgag gggtggatta aatgaaatac gcataaatta ctatacaaaa tgcctgcagt gaaagcccgt tgaatttgtt 001920
001921 gagatagatt gcaaatttta ctttagtctt cccagaagtc acggtaaaga agggtacaGA AGTATTGTGT ATTCAAAATC 002000
002001 CAAAGTGCCT TTGGGATAAA AGTAAATAGG TCATTCAGGA GAAGGACATG TTTTCTTAAT TCTAAAAGCT GATGAAATAT 002080
002081 ATTTTACAAA TGTTTCTCGG TGACCCCAAA ATACAAATTC AATTTGAAAT GAGCAGGGAT GCTTGGTCTT GTGGCCGTAG 002160
002161 ATCCTCGGTA TATCTACAGA TGACCTTTGG TAATCCTTGA GCTTTCTGTA ATATTTTCGA aaattatatg catgtgtgca 002240
002241 tgtacaaaat tatatgcatg tgtgtacttt tttctgggaa gaggatttgg aattttaatc aacttcttaa aggagtccat 002320
002321 agatcccaaa aggaaaaaga acttctgAAA TTTGTCAAGG GAAGGATAGA TTGCCTATTC TTCAGACCAT CCTTTAAGta 002400
002401 tatatataga tgtgtgtttg tgtgtgtgtg tgtatatata tatatatata tatatatatt tttttttttt ttttgagaca 002480
002481 gagttgccct ctgtcaccca ggctggagtg caatggcatg atctcagctc agtgcaacct ctgcttccct ggcctaagtc 002560
002561 attcttgtgc ctcagccttc cgagtagctg gaattacaga catgtgccac gatgcccagc taatttttgt atttttggta 002640
002641 gctgggatta caggcatgag ccaccacgtc cagctaattt ttgtattttt agtagagacg gggtttcgtc atgttggcca 002720
002721 tgctggtctc gaactcctgg cctcaagtga tcctccggcc ttggcctccc aaagtagtgg gattacaggc atgagcccct 002800
002801 gcacctggcc GGCttttttt tttttttttt tttttttttt tgagacaggg tcttgctctt tcactcaggc tggaatgcag 002880
002881 tggtgcaatc acagctcact gcagcctcga cctcctggac ccaagcgatt ctcccacctc agtgtccttc gtagctgaga 002960
002961 ctacaggtat gcatcaccac ttcagactga tttttgtatt ttttgtagcg atggggtctc gccatgttgc ccaggctgct 003040
003041 tttgaactcc tgaagtcaag cgatccttcc atctcggcct cccaaagtgg ggggattaca ggcatgagcc attgtgcctg 003120
003121 gccAGAGCCT GATATGTTTT TAAATGAGAA GGTGACCAAA AAAGATACTA TTTCAACAAA TCTACTGTTT CTAGCATTGT 003200
003201 TCCATTAAGT GAATGGCAGA AAAGAGGAGA GTTTTTAAAA ACTTGCAGCC TGTTGATTCT TTCATTCAAC AGTTATTTGC 003280
003281 TGAACACATT TTCTTTCTGT TCTTTTATAC ATCAGTTTAA ATTTATGCAG GCAAAGCTTC TGTTAATCAT AAGTCAATGA 003360
003361 TAACTGAAGT GATAACTgaa atcagtagtt tataattgga tagttcattt taagaaggga tgagacaatA CACATAGGTA 003440
003441 CTTTTAATTT CAAGGTAATT TCATTCCAGA AAAATATAAT TGAATTTGCt ttttgtttgt ttgtttgagg tggagtctcg 003520
003521 ctctgt
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Predicted Small Protein

Name NONHSAT054926_smProtein_2231:2347
Length 39
Molecular weight 4436.3352
Aromaticity 0.184210526316
Instability index 45.5736842105
Isoelectric point 9.50848388672
Runs 8
Runs residual 0.0379155124654
Runs probability 0.0246643702526
Amino acid sequence MCACTKLYACVYFFLGRGFGILINFLKESIDPKRKKNF
Secondary structure LLLLLLEEHHHHHHHHLLHHHHHHHHHHLLLHHHHLLL
PRMN LLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLL
PiMo ooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiii