NONHSAT089456

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT089456

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

2137 nt

Genomic location

chr3-:46795974..46854064

Exon number

5

Exons

46795974..46796138,46796900..46797162,46797532..46798119,46852596..46853363,46853712..46854064

Genome context

Sequence
000001 GCTCCAAGTT GCCGCCAGAA CCCATGGCCG GCGTGGAAAC CGCTGCGAGG CGGCGCCACG ACGGAGGCTG AGGTCGCCGG 000080
000081 CAGTATCCAT GGCGTCCCAG AGCGGCAGCT CCCTGGGGCT CCTGGCCTGG TTCTTGCTTC TTCAGCCATG GCTCGAAGAG 000160
000161 GCCCGGGCAG GCAGGGTGGG TGCGCAGGGA GGCGTAGCAC TGCTCTTCCC CTCCGCGCTC CCCTCAGGGC CAGGCGGCCA 000240
000241 GGACCCCGGA GCGAGCGGAT GGGAGCCGCC ACCTGTAGGG GCTCCAGGAT CCCCAGCGGC CCCCCAGTCC AGGGGGAACG 000320
000321 CAGTGCGCCC CGCTTCGGTG TTACTTCCCT CAGCCTGTGG CCAGCGGACT TCAAGGATAA CTGGAGGATT GCCGGCTCCA 000400
000401 GACAGGAAGT GGCCCTGGCA GGTGAGCCTG CAGACCAGCA ACAGACACAT CTGCGGAGGC TCCCTTATCG CCAGACACTG 000480
000481 GGTACTCACT GCCGCTCACT GCATCTCTGG GTGAGGGTTT GGGGCTCAGA GCTTGGGCCC TGATCAGGCT GTGGGACCTG 000560
000561 GAGCCAGTCT GTCCCCCTCC CTGAACTTCC TCTTCCTCAT CTGTAAAAGG GGGTGACAGC CCCATAGTTT TTATCCAGTC 000640
000641 TGGGTGAGAC CTGAGGATTT GCATTTCTAA CAAGTTTCTG GGTGTTGCCT CCGCCGCTGA TCTGGGGACT ACTGGCTAAA 000720
000721 GTGGTCAGGG GTCCTGGAGG GATGTGGCTT GGAGAGAGGG AGGTAGCTGC TGGCTGGCAT AGGAAGATGG TACCAGGCGG 000800
000801 GAAGCACCTC GAAGGTGTGG AAGCAGAGTG TAGACCCTGG AGGATCTTCC TGCAGCCATC TGGAATACAC AGTGAAGCTG 000880
000881 GGAGACACAA ATGTGCATCA TCGCTCCAAA ACAGCACTTG TGGTCCCAGT TCGTGACGTC GTTATCCACC GATATTTTAC 000960
000961 GTCTCCTGGA ATAATTGAAA ATGACATTGC CCTTGCCCTG CTTGACTTCC CTGTGAATTA CTCCACGCAC ATCCAGCTTG 001040
001041 TGTGCCTCCC TGAACAGGCT TTCATGGTGC AAGCTGGTAC GAACTGCTGG GTGACCGGAT GGGGCAAAGT AAATGAAACA 001120
001121 GGTGAGCCAT ACCGACCCGA GGAGGATTCC AGAATGACCC CGGCAAGCCC AGAAGCCCGG ACGTCTCCTG TGCACCCGAA 001200
001201 ATTCCCCAAA ATTCCAGAAA CTTCTGTAGC TCCAGGGTCT CCAGCGACCG CAGGGCCTCC AGGATCCTGG GTTACTTCAG 001280
001281 CATCTACAGT GGGAGAAGCC TTGGAATCCG ACGGAATCTC TGACCTTGGA AGGCAGTTTT CTCAGGGTAT TGTTTCTGGT 001360
001361 GCTAGATCTG TCCTGGCCTG CGGGGTAGGT CAAAGGGGAC ACAGCCTGGC TCAGGGAGGT TGAGGGTCAG ACCCTGACCT 001440
001441 AGATGATTTG AGAGAGAGGA TAGATAACCC GCCTCCGCCC TGGGCAGCCT GGTGGGGTGG TGGGAAGGTA GTGGCTTCAC 001520
001521 TTCCAGTCCC CTCTCTTTAC TGAGCCCACC AGCCTGTGGC CACCGTGTTT CAAGGATGAT TGGAGGATTG CCAGCCCCAA 001600
001601 ACAAGAAGTG GCCCTGGCAG GTGAGCCTGC AGACCAGCAA CATACACCAC TGCGGAGGCT CCCTCATCGA CAGGCGCTGG 001680
001681 GTGCTCACTG CCGCCCACTG TGTCTTTAGT AATTTGGAAT ACAAGGTGAA GCTGGGAGAC CCTGACTTGC ATGCTGGTTC 001760
001761 CAAAGAGGCA CTGGTGATCC CAGTTTGAGA CATCATTTTT CCTAGCAATT TTGATTTTGC CACTTTGACA AGCGACATTG 001840
001841 CCCTTGCTCT GCTCGCCTAC TCTGTGAATT ATTCCTCACA TATCCAGCCT GCGTGCCTCC CCGAAAAGCT TTTTGAAGTG 001920
001921 GAAGCTGGGA CAGAGTGCTG GGTGACTGGA TGGGGCCAAG TGTCAGAGAG TGTTTCAGGA CCAATGCCAC TTGTTCTTCA 002000
002001 GGAGACTGAG CTAAACATTA TGCGTCATGA GAAATGTTGT GAGATGCTCA AGAACAAGAA TATATCCAAG AGTAAAATGG 002080
002081 TCACGAGGGG GACCGTCTGT GGCTATAATG ACCAAGGGAA GGATGCCTGT CAGGTCA
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Predicted Small Protein

Name NONHSAT089456_smProtein_890:973
Length 28
Molecular weight 3143.7196
Aromaticity 0.0740740740741
Instability index 49.7518518519
Isoelectric point 6.51995849609
Runs 5
Runs residual 0.0214707461084
Runs probability 0.00448683978095
Amino acid sequence MCIIAPKQHLWSQFVTSLSTDILRLLE
Secondary structure LEEELLLLHHHHHHHHHHHHHHHHHHL
PRMN -
PiMo -