NONHSAT039199
Revision as of 21:44, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT039199 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(S) |
Length |
1723 nt |
Genomic location |
chr14-:90296178..90303007 |
Exon number |
3 |
Exons |
90296178..90297560,90299421..90299521,90302769..90303007 |
Genome context |
|
Sequence |
000001 AGATGTACAT TAATAATGAG CTAGAAGGGA GAGGTTTTAT TTGGGATTCA TCAATTTCCT GGAGGTTCAT GTGGAACATC 000080
000081 TATGGCACAG GGGAGTACTG ACGTCTGGTC CCTAGCCCTG CTCCCCATGG TGAAGAGCCT TACACACTGT GTGGACACAC 000160 000161 CGCCCCCAAC ATCCATGCTT AATCCACATC CCCTTCAAAC AACCACTCTG GGCAGACCCT CAGGAAGAGG CCTGCAAAGG 000240 000241 GAAAACTCTT GTCGGTCCAG AGAAGAAAGA ATTGCCAAAA TTAAATAAAA AGTCAAGATT CCATTACCTG ATGATTTGTG 000320 000321 TATTTCACGT TGTTTGCAAC AAACCTGGAA GTCATCCCAA GTTCCTTTCT TTTTCTTACC CTCCACATCC AAGCTGTCAA 000400 000401 CAAATCTCGA CTCTGACCAC CTCTCAGCAC CTCCACTGTG TCACCCAGTG CAAACCTCCA CCACCATCTC AGCCTCTTAC 000480 000481 CCAGCTCCAG GATTCTGCCT TTGCCCCCAT CAATCTACTT CAGGTCTCTT CTCCACCCAA TAAATAAGTC CAGCAATGAT 000560 000561 CCTTGTAAAA TGTACATCAG GAGGGGCCTT CTCATCTCAC CTATGATAGG TATGGAGTTT TTTCTTTTTT CCATTTCACC 000640 000641 TGTGATGTAT GTTTGTGACC TCCAATATGT AACCACTTAC TATGTTGCTT TTAAAATGAT TTTTAAAGGT TTGTTTACAA 000720 000721 CCATAGCCAC TATTTGCAAT TATGAGTGTA TAGCACTAAG CATGAGAACT AGATCTGTGA AATTTTTTGC CAGTTTCATT 000800 000801 AGGTGACCTC TGTAAGCATC AAAACCTGGC ATTGATTGAG GTTGTTTCAG GCTCAACTAG TACTGTTCAA AATAAAGTAA 000880 000881 CTGAAAGCAA GTCTGGTGGT AGAAGGTACT TTATAAGCTA ACTAATGCTT TTCAAAGGGA TATATATTGA AGGAAAGGCT 000960 000961 CGTTTTATAT TACATCCTAT AAGGCAGTGC TTCTTAAACT CTCTGTGGAA AAGAACCACT TTTTATAAAT TTCCAGTCTG 001040 001041 TTGCAAACCG ATACTTTGTA AAAATTAATA AAAGTGAATT ACTAGAAAAA TGAAATTTTT GAAAAAGACA TATAAAATAA 001120 001121 AAGTTGTAAT TTTTAGCAAA CAGGAAGTTA TATTGCAAAA ATTACTGGGG TATAGGAAAA AAGATACAAA AATTGTTCGT 001200 001201 GTTTGTTCAT TGAAAGTATG CGTGTAAGCA ATTAATAGGC TATTGCACTT GTAAGTTTTC TTCATTTTAA GGGAAAATGG 001280 001281 AATTCCCATA TTAAATGTCT ATTTGTACAC TTTGAACACA ATGTGGATAA ATATTTAAAG TTTTTAATGT GACAAATGGG 001360 001361 ATTGCTTCCT ACTTGATACT TTACCTAATC TAGGTAAAAT TGCCAATAAG GCTACTTGTA GGGAATAAGG TATATCTAAA 001440 001441 TAATTTCTAC GCTTTATTTT AATAATGATA CAAAAGAAAC CAGTCTCACA ATGGAATGGA GGGAGAGATT TTAGAGCAAT 001520 001521 TTTCAGTGAG CTCAGTTTAT TCATTTTAAA ATTTTATCTA AGATGGAGCC AGAGCCACTA TGCTTTCAAA GTCTTCCAAT 001600 001601 CCCTCAACAG ACCTGAGTGC CAGCAATATA TCCTGTAAAT TATAATTAAA TATAATTATC TTTTGGTGAA ATAAATGGAT 001680 001681 CCTAGATCCA TGGATTTTTT AGACATAGAT CTTCTTTTGA TGG |
Predicted Small Protein
Name | NONHSAT039199_smProtein_569:805 |
Length | 79 |
Molecular weight | 9171.0181 |
Aromaticity | 0.192307692308 |
Instability index | 49.3448717949 |
Isoelectric point | 9.40814208984 |
Runs | 17 |
Runs residual | 0.0842714196373 |
Runs probability | 0.0418757858204 |
Amino acid sequence | MYIRRGLLISPMIGMEFFLFSISPVMYVCDLQYVTTYYVAFKMIFKGLFTTIATICNYEC IALSMRTRSVKFFASFIR |
Secondary structure | LEEELLEEEELLLLLLLEEEEELLEEEEELLLLLLHHHHHHHHHHHHHHHHHHEEELLHH HHHHEEELLHHHHHHHLL |
PRMN | LLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHHHHHHHHHHHHHHHHHHLL LLLLLLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiTTTTTTTTTTTTTTTTTTooooTTTTTTTTTTTTTTTTTTTTTTTTTii iiiiiiiiiiiiiiiiii |