NONHSAT031431
Revision as of 21:14, 16 October 2014 by 124.16.129.48 (talk)
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT031431 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1612 nt |
Genomic location |
chr12+:121837932..121856543 |
Exon number |
4 |
Exons |
121837932..121838021,121840545..121840610,121853962..121854180,121855307..121856543 |
Genome context |
|
Sequence |
000001 AGAGGGAAGG AGGTCGGCAG TGTGAGGAGC TGCTATGGTG CTGAGTTTCC TGGTAGAGCC GGCCGAGCTG AGGCGGTCGC 000080
000081 GGCCATGAAG GTGGGGGAGT GGTACTAAGG ATCAAGTATA CTGTTAAAAG AAAACAAAAA CCCAAGCATG AGGAAGGCGG 000160 000161 GTGCCACGTC TATGTGGGCT TCGTGCTGTG GGCTGCTGAA TGAAGTCATG GGAACTGGAG CTGTCAGGGG CCAGCAGTCA 000240 000241 GCATTTGCAG GAGCCACCGG TCCATTCAGA TTTACACCAA ACCCTGAGTT TTCCACCTAC CCACCAGCAG CTACGGAAGG 000320 000321 GCCCAACATA GTTTGTAAAG CCTGTGGGCT TTCATTTTCA GTCTTTAGAA AGAAGCATGT TTGCTGTGAC TGCAAGAAGG 000400 000401 ATTTTTGCTC CGTTTGTTCA GTCTTACAAG AAAATCTCCG TAGATGTTCT ACTTGTCACT TATTACAAGA GACAGCATTT 000480 000481 CAGCGCCCTC AGTTAATGCG ACTGAAGGTG AAGGACCTGC GGCAGTATCT CATTCTGAGA AATATACCCA TAGATACTTG 000560 000561 TCGTGAGAAA GAAGACTTGG TGGATCTAGT ACTGTGCCAT CATGGACTAG GCTCTGAGGA CGACATGGAC ACAAGCAGTC 000640 000641 TGAATTCTTC AAGGTCCCAG ACTTCTAGCT TTTTTACACG TTCGTTTTTT TCAAACTATA CAGCCCCCTC TGCTACTATG 000720 000721 TCTTCGTTTC AGGGAGAGCT TATGGATGGA GACCAAACAT CCAGATCTGG AGTGCCGGCA CAGGTACGAG GGGGTAACTA 000800 000801 ATTACACCCA GGGCCCGGCA CGCTTATTCT TGGCCGTATA TGGTGGGGCC TTTAGTGCTT GATGACTTCT GATAAACTTC 000880 000881 AAGTCATGTG CTGGAGTGAA GCTTCCACAC CCAGCTGAAC TCTGCACTTA AAGGCTGTCC TGATGTATAG TGTCTGCTGA 000960 000961 GGTGCTAGGT GGCTCCAAAG TCTGCTGTCT GAAGGGTCCC AAAATAGCTC ATCAGTCTCT TGGCCTTAGT TAATTTCTCT 001040 001041 GTCTTACACA GTTAGACACT AACTGTTGAA GAAATGGCTG TGAAAAAGTA GCACATACAC ATTTGTAGTG TTATGTGTTA 001120 001121 GTGCACGTGT TTCAGTGACC ACAGAAAACA ATCAGTAGTG TAAGTTAGCC TAATGCCCAT TTGTCTTGCT ACAGTGAAAT 001200 001201 TGTTCTAATT TAGTTAATGA AAGAGCCATC TGAATTAGTG AAAAAATGTA GTTATTTACT AATTGTAATT AATAATATTG 001280 001281 TCCCAGTGAG GTCCTTGGAC ATCCTGATTG AATAACATGT AAAGGCTTGT AATTAATATT TACTTGTACG TGAGTGATTC 001360 001361 TAAACTGCTG AAAGAAATGT TTTGAACAAA TTTTTTCACG CTTAATTTTC TTCTCTGAAG AAGGGGGTTA TTAAAAGTAG 001440 001441 AGGAAAgctg gatgcggtgg tgtgagcctg cagtctgata cttggcaggc tgaggcaaga ggattgcttt agttcaggag 001520 001521 tacgaggctg caggtgtacc atgattgcaa ctgtgaatag ccactgtacc cccagcctgg gcaacatagc aagacttttt 001600 001601 tttttgtttg ga |
Predicted Small Protein
Name | NONHSAT031431_smProtein_443:565 |
Length | 41 |
Molecular weight | 4386.8064 |
Aromaticity | 0.1 |
Instability index | 40.89775 |
Isoelectric point | 5.98883056641 |
Runs | 8 |
Runs residual | 0.0219758064516 |
Runs probability | 0.024531884826 |
Amino acid sequence | MFYLSLITRDSISAPSVNATEGEGPAAVSHSEKYTHRYLS |
Secondary structure | LEEEEEEELLLLLLLLLLLLLLLLLLEELLLLHHHEEELL |
PRMN | - |
PiMo | - |