ENST00000434399.1
Revision as of 15:29, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000434399.1 |
Source |
Gencode19 |
Same with |
lnc-GGCT-1:21,NONHSAT119872 |
Classification |
intergenic |
Length |
1217 nt |
Genomic location |
chr7-:30555925..30602441 |
Exon number |
5 |
Exons |
30555925..30556128,30563983..30564102,30590252..30590397,30601082..30601744,30602358..30602441 |
Genome context |
|
Sequence |
000001 AGAAGGTACT TGCTTCTCTT TCTCCTGCCA AAGCATGACC TTATAATTGT AAGTTTCCGG AGGCCTCCCC AGCCATGCGG 000080
000081 AACTTTTTCC TAAAATTCCC TTTTCCACTG GTGTGTGGTG CAAGATGAGG CACATTTTCC ATGGATGGTG AACAGAGGGA 000160 000161 GGAGCCTTTT GATCACAACC AGGTCACCCC ACTTCTAAGC CACTGTGCCT CCAGCCCCAC AAGACTAAGG AGAGAGAGCG 000240 000241 CAGCGTGGTG GAGAGTGAGC TGTGCTGGGA CCATTGTTTC CGTAACCTCG TTTTCTGTGT CCAGCTGACA CACCTTCAAA 000320 000321 GTGGCATCAG GTCCTAAACT GTAGCTTGCA ATGTGCCTGT TTCCAGAAAC CAAGGTGAAA GTGCTTTTAG ACAGTGTTCC 000400 000401 CATGCAAGAG TCCCTTCCCA GCTTTTTTCT GGAAATGCAT GTTTCTCTGA ACTCTGAGTC CCAAGAAAAA TCACTTGAGA 000480 000481 CACCAAGAAA ATGGGGGAAG TGCTAAAATT GTGTGGGAAT TCAAGCTTAA CAATAAACAT CAAGACATTT TTGATAAAAA 000560 000561 TGAATCCACT GACATCGGGG AGGAGCAAGA GAACAGCACG CTGACACTGG GTCAGAGGCT AAGACCGACA TTTCTGGGAA 000640 000641 CCACTCCCGG AAGGGCACAG AGGAGACGCT TTCAGCCTCT CATCAGCCAG CCTGGCCTGT AGCTGCTGCA CGTTATGAGT 000720 000721 GTGTTCCTGG CATGACTGCT TCTAACAAAG AAATGCTGAG GCAGTGTCAC GCTGGTGTCT GTCCTCCTTA CAGAATGCCT 000800 000801 GAACAGTTCC ATTGACTCAA AGTGAAGATC AAAAGAACCA AATGACAGCA ATAGCCAAGT GTAATCATCA GTAACCCTGT 000880 000881 GTTCTATCCA CAGTTAAAAG AATATTGGCA GAGAAACAGC CTTGGTGTTC CAGCAGGAGT GAAGAGGAAC AGGAAAACGA 000960 000961 GTGGCAGTAG CCCTGAAACA GCCACTTCTG GTGGTTGCCA CTCACCTGAG GATGTGGGGT CTTGCCATTT GCCCAGGCTG 001040 001041 GTGTCAAACT CCTCAAGTAA TCCTTCTGCC TCGGCCTCCT AAAGTGCCAG GATTATAGGC CTGAGCCACT ACACACAGCC 001120 001121 CGGAGTTTTT AAAAAATACT CAATTAAAAT GCTTCATTTA AGTGTATGTC TCTAAGAAAA TTTAATAATT GATTAAATAT 001200 001201 TGTTGAATAG ACTGAAA |
Predicted Small Protein
Name | ENST00000434399.1_smProtein_140:307 |
Length | 56 |
Molecular weight | 6107.6972 |
Aromaticity | 0.0727272727273 |
Instability index | 60.8509090909 |
Isoelectric point | 6.01177978516 |
Runs | 8 |
Runs residual | 0.00606060606061 |
Runs probability | 0.0452989754461 |
Amino acid sequence | MDGEQREEPFDHNQVTPLLSHCASSPTRLRRESAAWWRVSCAGTIVSVTSFSVSS |
Secondary structure | LLLLLLLLLLLLLLLLLLLEELLLLLLHHHHHHHHEEEEELLLEEEEEEEEEEEL |
PRMN | - |
PiMo | - |