NONHSAT089856

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT089856

Source

NONCODE4.0

Same with

,

Classification

intronic(AS)

Length

1309 nt

Genomic location

chr3-:50824105..50825716

Exon number

2

Exons

50824105..50824701,50825005..50825716

Genome context

Sequence
000001 ATGAGGCACA CAGCCACTTC TCGTCAGGAG CTGGTTGAAA ACTGTGCTGT GCCTGTAGCA GGAATGGCAC AAGATGATAG 000080
000081 CCGTCATGGG CAAGTGCCAT CCAGCTTTCA TCATGGTGCC ACAAGGAACT TGACCTGTCC ACCAAAGTGT AACAAAGGGA 000160
000161 ACCAGGAAGT CCTTATTCTG TGTTTGTGGA CACCAAGATG AGCAAACTAC ATCTCCATGA AACAGAAGAA CAGCCACATT 000240
000241 TCAGGGAGAC AGGAGCAGAG TCTGATGTGC ATGCTATTAA GGAAGACCAG GAGAATTCTG ATGACACAGA AGAGGAGGAG 000320
000321 GAAGAAGAGG AAGAAGTCTT TTACAAAAGG GAGCAGATCA TAGTGGAGGT AAACCTTAAT AATCAAACAT TAAATGTACC 000400
000401 TAAAGGGGAA AAGGGTACCT CTTCTCAATC CAAAGAGACT CCTGTTCTTA AACAATGAGG AGGAAGAGAG AGAGGAAGGG 000480
000481 GCCACAGATA ACAGCAATGA CTATGGAGAG AATGATAAGC AGAAGAAAAA GGAGAAGATA ACAGAGAAAG TCAGCGTTAC 000560
000561 AGAAAGAAGA ATGAGGAGAG CTGCCTCTGT TGCTGCAGCT ACCACTTCCC CTACTCCCAG AACTACAAGA GGTTGCAGGA 000640
000641 AGAGTGCAGA GCCACCTAAG CGTAAGAAGC GGGAAACAAA GGAGCCTGAA GCACCAGTGC AGAAAGCTAA GTtgccCCAG 000720
000721 GGTATTTAAT GCTCACTGGT GTCTGGAGAA GCAAATGAAT ATTACTCATA GGCACATGCA GATTTGTGAT AAATGTGGCA 000800
000801 ATAAGTTTGT CCTGGAAAGT GAGCTATATC TTCACCGGCA AACAGACTGT GAAAAAAACA TTTAGTTTGT TGCCTGTAAT 000880
000881 AAATCGTTCA AGAAACTGGA TCCTTCATGA ACATATCAAG ATCGTCCATG GATATGAAGA AAAGAAATTT TCCTGTGAAA 000960
000961 TTTGTGAGAA AAAATTCTAT GCCATGGCTC ATGTGCGAAA ACACATGGTT GCACACATGA AAGACATGCC ATTTACATGT 001040
001041 GAAACCTGTG GAAAATCATT CAAATGCAGT ATGTCACTCA TGGGGCACTC CCTGCAGCAT TCTGGAGAGA AGTCCTTCAG 001120
001121 ATGCGAGAAC TGTGACGAAA GGTTTCAGTA CAATTACCAG CTACACACCC ACATGAGCAT CCACGTTGGG CACAAACAGT 001200
001201 TCATGTGCCA GTGGTGTGGC AAGGATTTCA ACACGAAGCA GTATTTTCAT GAACACATGA AAACAAACAC TGGAGAGAAA 001280
001281 CCCTTTATCT GTGAAATCTG TGGCAAAAG
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Predicted Small Protein

Name NONHSAT089856_smProtein_197:457
Length 87
Molecular weight 9980.5739
Aromaticity 0.0348837209302
Instability index 77.8315116279
Isoelectric point 4.45965576172
Runs 9
Runs residual 0.0349704963554
Runs probability 0.0395984219513
Amino acid sequence MSKLHLHETEEQPHFRETGAESDVHAIKEDQENSDDTEEEEEEEEEVFYKREQIIVEVNL
NNQTLNVPKGEKGTSSQSKETPVLKQ
Secondary structure LLLLLLLLLLLLLLLLLLLLLLLHHHHHHLLLLLLLLLHHHHHHHHHHHHLEEEEEEEEL
LLLEELLLLLLLLLLLLLLLLLLLLL
PRMN -
PiMo -