Lnc-TNKS-1:1

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Annotated Information

Name

RNCR3: Retinal noncoding RNA 3

Characteristics

Intergenic, four exon transcript in mouse.

Gene contains a highly expressed, brain specific microRNA (mir124a-1) in an exon (Lagos-Quintana (2002)).

Function

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Expression

Dynamic expression in mouse retinal development (Blackshaw (2004)).

Expressed throughout adult mouse brain with enriched expression in hippocampus subfields, Purkinje neurons of the cerebellum and the mitral layer of the olfactory bulb (Mercer (2010)).

Up-regulated during differentiation of GABAergic neurons in culture but downregulated during oligodendrocyte differentiation (Mercer (2010)).

Conservation

LncRNA is conserved in mammals and overlaps the LOC157627 noncoding Refseq gene in humans (Mercer (2010)).

Misc

Oct4, Nanog transcription factors are reported to bind to locus (Guttman (2009)).

Transcriptomic Nomeclature

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Regulation

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

Annotation originally sourced from lncRNAdb.

Basic Information

Transcript ID	lnc-TNKS-1:1
Source	LNCipedia2.1
Same with	,
Classification	intergenic
Length	2922 nt
Genomic location	chr8+:9757573..9760839
Exon number	,
Exons	,
Genome context
Sequence	000001 CGCCCTCCGC AGACCTCCGC GCAGCGGCCG CGGGCGCGAG GGGAGGGGTC TGGAGCTCCC TCCGGCTGCC TGTCCCGCAC 000080 000081 CGGAGCCCGT GGGGTGGGGA GGTGTGCAGC CTGTGACAGA CAGGGGCTTA GAGATGCAAA CAGACTCAGG GAGAGAAACA 000160 000161 GAAGCTGATT CTGTGACAGA AGCAGATCTG TGCAGCACAG ATGCGGTGTG CGTGGGGAGG GGGTCGCCTG GGAGCGCATT 000240 000241 GCGGAGTGCT TGTGTGTGCA GATTTTTCTC TGGGCTCAGG ACTCATTGTA TGTGGGTCAA CACCTTCCTC CGTGACTGTG 000320 000321 TTTTTGTTCT GAGCTGAGTT TTTTGGTTTG CCCTTAAAAA AATAATAATT TGGCATCCAG AGACTGGCAG ACTGCCTCAG 000400 000401 GGCCTGGACT GCGGATATAT TGTGTTCTGC TTGAGGTTTG GGGAGGAGGG CAGGCGGTAG GAAGGGAGAG GGGGAGCTGT 000480 000481 TTGTCACACT TTGCTGTAGA GCTGAGAGCA CCTGACAAGC TTAAGGAAGT CGTTGGGCTA TGTGGACAAG AAGGAGCCAG 000560 000561 CTCCCAGCGG GTTCACAAGC TCTATCGGAG TTGAAAGCGT GGTCATGGCT CTAAGGAGCA CCTCACGCCC TCCCTGTAGC 000640 000641 TGTTATTGCA GTTTCAGGCA GAGATCCAGG AGCTGCAGAG GAAGGGAGAG GCACAATAAC CTACATGGAC CCAAGGGAGA 000720 000721 CATGTGTTCC TTTAAAAATG TGAACAGAAG GAAAAACAGA ATGTGTGCAA CTGGGGGTCT GAGGAAAGAC TGTTTTGAAA 000800 000801 GAGGCTGTCA GGGAATGGAA AGGGTTAAGC TTTTCATCCT GAAGAACCTG CTTCCCAAAT CAGGCCTTCC TCCCATCACT 000880 000881 AGACCCTGAG CAGCAGCTGG TCCTAGAGAC CCCCCTCGTA CTGCGCTGCC ACAGTCTCAT CCCATTTCCA GCTCTGTATT 000960 000961 AACCACCAAG CTGCAGCGGA TGGGGCAAGA CCTAAGCTCA TTAATTTCCA GGTGGAGGAA ATGGAGGAGG GGCAGGTCCC 001040 001041 TGCAGTAGAG GGAGGAGCAG AGAAAGGAGG CCAAGAGCTG GATCCTTCTG CCCAGGAAGC CTGCTGCATC CCTTCCCCCG 001120 001121 AGCATGGCAG AGGCCTGGCT TTGCAAGGCC AAGGCCATAA GGGATGCTTA GGAGATTAAT TTGATTCCTG ACACAATAAT 001200 001201 CAAGCCCTAA GAGTCTCCAC TGAAGCTTAC TGAGGACTTC TTTCCTCTCC AAAGCCTCAG TCTAGCCTGC TAAATAAATT 001280 001281 AGTATTCAGT GATGCCTTGG ATCAGGGCCC CTCCCCGGCC TCAGTTTCCC CAAATATTTA TTAAGTACCT ACTGTGTGCA 001360 001361 ATCCTTGTGT AATTATTACC TCTTAGGCTC TTCATTTGCC CTCCTAAAGC AGTGTTTAGA GTCAGGCAGA GGTTAAGTGT 001440 001441 GTTGCACCTC ACCTAGATAC TTCCAGAACC TTCTCTGGGT CTGCAGAATG TGGCACAACC TGCTTGCCCC CGCAGAGAGA 001520 001521 AAGCTGCAGT GCACATCCTG CAGACTGCAG GTGCTGGGCT GCCTCTGGAG TCCCAGAAGG CAAGCTTGGC TGCAGGACAG 001600 001601 AAAGGGAGAA CAGCTTCTCT CACCCCTGAG CCTTCACAAG CCCTTGTCTA TTTGCCGTTG CCTTCAAAAT ATACCTCCCC 001680 001681 CGAAACCAGT AGCTTTCTGA GTCCTGGTGT CCCCTCCGCC CTTTCTGGAC AGGTTTGGGA AGAAGAAAGC AGTCAGTGCT 001760 001761 GGGCCTTATT GGGGTGTGAA GCGCCTTGCT CTGCCCCTTC TGCTCACTGT GAAGGCCGCT GGATGCTTCT CTTAGGCATG 001840 001841 GTTTAAGCCT CCGATTACTA AACCCCTTGC CCCACAAACG TCCACATTGA CGAGCCTCTT TTTAGTAACT GCTTCCCCGT 001920 001921 AATTCCTTCA GAGGTTGCTG TACCCTTCGC TGATGTGCTG CCCTCCTGTA AAACCTCCAG ATGCCTTCCC ACGTAATGCC 002000 002001 CCTTTCAGAT GCTTTAAGCT GAGAGCTTAA ACCACAGGTA CCATGGCTG