ENST00000553157.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID	ENST00000553157.1
Source	Gencode19
Same with	lnc-RP11-480I12.4.1-1:2
Classification	intergenic
Length	551 nt
Genomic location	chr1+:202780082..202781284
Exon number	2
Exons	202780082..202780498,202781151..202781284
Genome context
Sequence	000001 AGAGGCCGGA CCTGGGCAAC CCCAGCCTGG AGGTGCCGGG GCCGGAGCTC CCAGAGGGCT GGGTGCGAGG CCTAGGCGGG 000080 000081 GTCAGGTTCG GGTTCCTAGG CCATAGCGGA GCTGCAGCCC AGGCGGCCGG AGCGGAACCC AGCCCCGCTC CGAGTGCCAC 000160 000161 GTCTCCAGGA ACCCCCTCCT TACTCTTGGA CAACACTCCG CCCCCGCCCG GGCCTCCGTC CCCCAAACCG CCCTCATTTG 000240 000241 TGCAGCGCCA GATCCTTCGG ACACATCCCT AGGTGTCTCC ATCCTCATTC GGTCCATCCA ACTCCCAGAC CTCACGTCAA 000320 000321 CCGGCTGCAC CCCACTTTCC AGCCTGCGCC CCAGATCTGC AGCCTTCGCC CCTAGATACA CCCGCCTGGT GATGAGGCGC 000400 000401 TCCTCGCGTT CCTTCCGGCA CGTGGCACAC GCTCCACAAA TATTTGTTGA AAGGGAGGGT AAATGGCCTT GAGTTTCTGT 000480 000481 GGCTACCATT GGCTGAGGAT GGAGCTTTGG GCTGGACAAA GAAGAATCTG GTTGACCACA TGAAGCAGGA A

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Annotation (From lncRNAdb)

[ENST00000553157.1]

Section	Description
ID	KDM5BAS1
Characteristics	Spliced two exon transcript. Multiple splice variants, ~550- ~750 nt in length, second exon varies. Expressed bidirectionally with KDM5B. In-vitro translation showed no sign of protein product.
Expression	Expressed in HeLa, K562 and GM12878 cells, plus a number of human tissues.
Function	KDM5B-AS1 expression appears to stimulate KLHL12 gene expression (in HeLa cells). A gene located ~80kb from KDM5B-AS1 on the opposite strand.

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