NONHSAT003744
Revision as of 07:39, 13 October 2014 by 73.162.128.239 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT003744 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2840 nt |
Genomic location |
chr1+:66104459..66107298 |
Exon number |
1 |
Exons |
66104459..66107298 |
Genome context |
|
Sequence |
000001 AGAAATAGGT AAAGGGCTGA TAGCAACTCA TTACTTGATG TGGTACGAGA GCCTTAGTTC TATGCAAAGA TAAATGGAGA 000080
000081 AGCGTTTTTT TCATGGATAA TTTTACATGG CTTTAGAGAC ACAGAAACAG ATAAATTATT ACATGTATAA AAATTTTAGT 000160 000161 AAAATTGACA TTTTAAATAC ATGCTTATAG ATTATTGGTA TTTAATTGAA GGTACAGTAC AGAAGAGATA GAAAAATAAA 000240 000241 TTTTGCCCCA CTCTGAAATT GAAGACTGAC CTCTGAGCAT GTCCGCTGAG ACACAGTATT CTCCTGTGAT CTGGGACCCA 000320 000321 GAATAACAGG AAAGAGAAAC TGATAGATGT TTTCATCAGC CCAAGGATGT ATGTATCTTA CTTGAGTGAA TTCAACAGTC 000400 000401 CCAGGACCAC TGTAGTGCTG TAGGTCTGTG TAAAGAAATG TAGTGACAGC ACATTAACCT GAGATCATTG ATACCATCTT 000480 000481 GGTTCAGCCT CAGTTCCCCA GATAAGTGAA CAAATGAACA AAAATGCACT TCAGAAATAT TGAAATTCCA AGGCACTATT 000560 000561 TCATGGACAG TGCTGAACAA GTATAGTTTG GCCTATTGGT ATGTATAGAC TTAGATCATA TTTATTGTCA ATGGGCTTGA 000640 000641 ATTCTGATTT CCACTTTTGA AAGTTTATTT CACTATGTAT CATTACATTT TATTGGGACC TTGTGAAAAC TACCTGCCAT 000720 000721 GAAATACTGG ATTTTCACAT AATTTAGAAA AAATTTAGAA TGTTTTATGC CTCAGAATGG TCAGGAACTT CCCATTTCTT 000800 000801 CCCACAGCTT CTATAAAAAA AATTTAAAAG GAAGGAGGAG CTGAAATAGG GGCTATGGTC TTTTAAACTT ATAAATCTGG 000880 000881 AATTTTTAAT ATTTCATTTT AAGGCCTTAA ACCGAAACAC AAGCTACTAA TCAGTCTTTC TAAATCTGAC CTTCATTGAA 000960 000961 AGCAACTCAG AAATTAATAA TTTGTGCTGT GGCTTCAAGT TTAAATAGAT TGTTTGAAGA GAAATCATAT GTCAGGGTTT 001040 001041 GCAGGATTAC AGGATTTCTA ACTTAAACCC CCAAGAACAA TGAAAAAGTT GACGTACATG TCACTATGAA TAGGCACCTT 001120 001121 CTGTTGGATC TCTGTGTCCA TTTAGAGATG AGCTACAAGT TGACAAGAAA AATAGGAGCA GTTTTTTTTT TCTTTTTAAA 001200 001201 CCTAGTCACC AAATGGTAAA AGGACTTGGA TGAAATTCCA ATACCAGTGT GAGATTCTGG ATTTAGAATA AGGTTTTATA 001280 001281 ACCTTAGGCA TGTCATTCTT CTACTTCTCA TTTTTCCCTA ATAAAACTTA TTCTCTCTTC CATAATATCA TATATATGGT 001360 001361 CACATTACTT CAGGAATATT TATATTACCT CCTCCAAAAC TGAAAGAAAA TAAACTTTAG GCTGTAAGAG TTGAGAATTA 001440 001441 TGCATACAGG GCTCACAGGC GGAGTTGGAC AATATGCTGA TGGATCAAGA CATACTGCAA CCACAAAGTT CCATCTCACT 001520 001521 TAGATGTGGA TGAAAAAAGA TCTCTTGCTA AATTATTTTC TGTGACCTTA AAAGAAATTT GTTTCACTTT TCATCTTTCA 001600 001601 AGGGTCATCT TGATAGTTAC CTTAACAAAC CTTTCTCAGC TATTTATTAT TGAGAAAGCC CATTCTTAAA TTTTAAGTCA 001680 001681 CAAAATTATA GTTGTCCACT CTACTATGAC TGAAAGAAGC AGCATTCAAG AAAAAATTTA AACATAGTTA CCAAGAAATG 001760 001761 TGAAGAAGTA TTTATAAAAG GAAGCTACAT AAGTAGGTAA TTTTACTCTT TCTTAACCAG TTTAAAACAG TAAAGCACAC 001840 001841 CTGCATCTAA TCACAATGTT AGGCGAACAA CTTAAAACAT GATCAGCCTG TATGAGAACT GGGATATTGT TACATATTCA 001920 001921 GCCTGTATGA GAACTGGGAT ATTGTTGTTA CATGTATTTG TATAAACATT AGGAGATGAT TTCCATGGCt tttttttttt 002000 002001 tttttttagg aagtcttgct ctgttgccca gctggagtgc agtgatgtga tctcggctca ctgcaacccc tgcttcccag 002080 002081 gttcaagcga ttctcctgcc tcagcctccc cagtagctgg gattacgggc acaccaccat gcccagcttt tatttattta 002160 002161 tttatttatt ttggattttt agtagagatg gggttttgcc ctgttggcca ggctggtctt gaactcctga cctcaagtga 002240 002241 tccgccctca ttggcctccc aaagttctgg gattacaggt gtgagagctg ccgcgcctag ccCTTCATGA GGTTTTATAG 002320 002321 TGAATGAATT ATTTTTCTAT AAAGTTTATC AATATTTATT TTGGAAAGCT GCTGAAAATG TCTTTTTCAA AATTAATTAT 002400 002401 GCTTAAGATG TATGGCATTA AATTCAATTT TATGAGGCTT TCTGACATAT TTACTAAAAA AACCTGGAAC TGAGACTGAA 002480 002481 TTTGGAAGAC ATTTAATTTT GTAGTGAGAT ATCTATATTG TAGATATTGT ACTTTTAAAA CCTGTCATTA AGTGTTTGGC 002560 002561 ATGTGGTTAA TACTTTCTCT TTAGTCACAA CTGGTATTTT AATAAATGTT ATAAACGTAA GTGCCAAGAT ATGCATCACT 002640 002641 AACTGTTCTA TGAAATTTGT CTACTTCTCC TTTATGTTCC CAAAGTCACA GAGAAAGCAG TGTACTTTAT GACAGTATAT 002720 002721 TTATCTTTTT ATCATTATGA ATTATAAGCA GTGTTAATTT TGAGAAATAA AAGTCCAAAA AGAATTATTA TGAGTTTAAG 002800 002801 TTACTTTAGG ATTATATCTG TTGTATGGTA AATAAAATAA |
Predicted Small Protein
Name | NONHSAT003744_smProtein_1289:1402 |
Length | 38 |
Molecular weight | 4700.4278 |
Aromaticity | 0.324324324324 |
Instability index | 96.0408108108 |
Isoelectric point | 6.49932861328 |
Runs | 5 |
Runs residual | 0.0446317877511 |
Runs probability | 0.057957957958 |
Amino acid sequence | MSFFYFSFFPNKTYSLFHNIIYMVTLLQEYLYYLLQN |
Secondary structure | LEEEEELLLLLLLHHHHHHHHHHHHHHHHHHHHHHHL |
PRMN | LLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLL |
PiMo | iiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooooooo |