NONHSAT005121

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT005121

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

2003 nt

Genomic location

chr1+:110954681..110961080

Exon number

4

Exons

110954681..110955861,110956713..110956853,110958631..110959099,110960869..110961080

Genome context

Sequence
000001 tgttgccagg ctggtctcga actcctgcaa tttgctctcc ttggcctcac gaaatgctgg gattacaggc ataagctaca 000080
000081 gcacccagcc CTTACGTTTA CTTTTCATTG ACAGGAAGAG TGTCTTCATC TCTGCATCCC TAGTGCAACA GAGCATGACA 000160
000161 AAAATTCAAC AAATATTTAT TGAAGAGTCT TGATGTCTTT TGGGAAAGGA ACTCTATGGT TACCTTTACT CTAAGGTAAA 000240
000241 GAAATTTAGG TCCTGAACTT TAACCACCTT CTCCTCTTCT TTCTTCCCTC TTTCATAAAT GAGCTCTTGG AAAATTAAAA 000320
000321 TGCCAGGAGG GTCCAGCAGA GAATACCCAA GCCCACATGT CCTGATGGGA AGTGGGGGAT AAGTAGAGAG GGAAACACAG 000400
000401 ACCCTGTAGG CCATCTCACT GCTGCTGGCC CAGGGGACCC TAACTCCTTT TGTTGACTCA TCAGAAGTAG AATCCTCCTG 000480
000481 AGGGTCTGTT TAAGAAGCAC AGCTCTGGTA GAAAGGGTAG CTTTCCTATG GGTACGGAGG GCTCTGCTAC CCCAGGGCTA 000560
000561 TCCACACTGG CCTGTGAATC ACTCTCAAAT GCTTAGGGTC ACGGGCTTTC AGTGGAATGA GCCCTCATGT GCCACCAGGG 000640
000641 GGCACCAAGG CCACAGAAAA CCCTATTCAG AAGGTTCTGG GGTGAGGGAA AGGAATCCAC GGGTTTGTGG AGCTGGCGGA 000720
000721 GCATGGGTGA GGACAGCATT ATGCTAGGTT GGtggccttg aagtcagatg taaattggga tcctggcttg gccactgact 000800
000801 atccatggga actttgaatc tcagggggct catttgtgat gtgggggtac cattatctgc ctcatcaggt tgtggggagg 000880
000881 attatatgag ataccttatg taagaggggc tggtgcattg tggaagtCAA CAAGTAAGTT TTGTTAAATT TGAGTAAGAA 000960
000961 GACCTGTTTG TTTCCTCAAG TTGCTTATAA TCTAGGTGAG GACACATCTG AGAGAATAAC TAATAGTTCA GTGAAGGTAA 001040
001041 GAGCCAAATG ATTGGCACAG ACCTCAAGTG GTCTGGCATT TACGGGAGAG GGGGATTGtg aaacaggaat tgaaagaaat 001120
001121 ttaaaaatgc ataagcaaaa actcagttta tgttttaaaa aaaccaattc cccctgagaa aAGGGTCTCT CGGtcctcac 001200
001201 agcatttttg aagtagctaa catcactatc ccccttttac agttaaaaac aacaacaaca acaacaaaaa cacaaaaccc 001280
001281 tgaggctcag aagataaata tttgctgaag atcactgtgc ttATTAGATG GGTGTTACTG ATTCTTACCT CAGAGAAGAG 001360
001361 AATGTCATGG AGACAAAATG ACCTGCTTAG AGTTCTGCAC CCCCCAGCAT GGAGAGCAGA GCGCAAAGAT TTCTTCCGGA 001440
001441 CTCCCACATT CCCCTTGGAA TCCAAGAACT GGTCTACTGT CACAACACTT TAGTACCCTC Ttgtaagcct gtggacaaat 001520
001521 cctctgatgc cttgatacct cggttttccc ccactataaa tgggaagata aattcactag aaacagtact taccttgcag 001600
001601 tgtcattatg agaatttcat gagacaatgc aatataaagc tcctagcaca gttccaggca ccattgtaag cactgaacaa 001680
001681 atgaaagctg ttgtcattAG GATCTCAAGA AATGACAGCT GAGGCAAATG TGGATTAGAC TGcattcagc attcttagct 001760
001761 gcaagcaaca gaagctgacg ctggtttaaa gCTCCCAAGG AGGCAGCAGA AACTGGGGTA ATCACAACGG TCAACAGCAG 001840
001841 CAAAGGCAGC ACTTTCTGAT TTACTTGACT GCTATGGATG CCACCTCTCT CCACGCCTCA GTTTAATATC TGTAAGTTTG 001920
001921 GTCAGTATCT CATTCAAGAA CATTGCATTT ACTCTGGTAC TTAAAGATGA AAAATCAACA tttacaaagc agatccattg 002000
002001 tca
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Predicted Small Protein

Name NONHSAT005121_smProtein_626:760
Length 45
Molecular weight 5224.9365
Aromaticity 0.159090909091
Instability index 61.35
Isoelectric point 9.29888916016
Runs 9
Runs residual 0.0414438502674
Runs probability 0.0493434611082
Amino acid sequence MCHQGAPRPQKTLFRRFWGEGKESTGLWSWRSMGEDSIMLGWWP
Secondary structure LLLLLLLLLHHHHHHHHLLLLLLLLLLEEEEELLLLEEEELELL
PRMN -
PiMo -