NONHSAT006713

From LncRNAWiki
Revision as of 09:07, 13 October 2014 by 73.162.128.239 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT006713

Source

NONCODE4.0

Same with

,

Classification

sense

Length

625 nt

Genomic location

chr1-:155209426..155214397

Exon number

6

Exons

155209426..155209553,155209677..155209753,155210421..155210508,155210877..155210971,155213886..155214021,155214297..155214397

Genome context

Sequence
000001 TGCGCGGGGC CCCAGTCTCC AGTCCCGCCC AGGCGCCTTT GCAGGCTGCG GTGGGATTTC GTTTTGCCTC CGGTTGGGGC 000080
000081 TGCTGTTTCT CTTCGCCGAC Gagacggggt ttcaccatgt tggtcaggct ggtctccaat tcctgacctc gtgatccgcc 000160
000161 cgcctcggcc tgccaaacag ctgtgattat aggcgtgagc caccgcgccc ggccAACCAT CATTATTATT TTTAACGTGG 000240
000241 ATCCTCTATC CTTCAGAGAC TCTGGAACCC CTGTGGTCTT CTCTTCATCT AATGACCCTG AGGGGATGGA GTTTTCAAGT 000320
000321 CCTTCCAGAG AGGAATGTCC CAAGCCTTTG AGTAGGGTAA GCATCATGGC TGGCAGCCTC ACAGGATTGC TTCTACTTCA 000400
000401 GGCAGTGTCG TGGGCATCAG CCGCTATGAG AGTACACGCA GTGGGCGACG GATGGAGCTG AGTATGGGGC CCATCCAGGC 000480
000481 TAATCACACG GGCACAGGCC TGCTACTGAC CCTGCAGCCA GAACAGAAGT TCCAGAAAGT GAAGGGATTT GGAGGGGCCA 000560
000561 TGACAGATGC TGCTGCTCTC AACATCCTTG CCCTGTCACC CCCTGCCCAA AATTTGCTAC TTAAA
[back to top]

Predicted Small Protein

Name NONHSAT006713_smProtein_305:460
Length 52
Molecular weight 5418.2121
Aromaticity 0.0588235294118
Instability index 54.3078431373
Isoelectric point 6.52130126953
Runs 6
Runs residual 0.0365948359542
Runs probability 0.0772684449155
Amino acid sequence MEFSSPSREECPKPLSRVSIMAGSLTGLLLLQAVSWASAAMRVHAVGDGWS
Secondary structure LLLLLLLHHHLLLLLLLEEHHHHHHHHHHHHHHHHHHHHHHHHHHHLLLLL
PRMN LLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLL
PiMo iiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTToooooooooooo