NONHSAT017623
Revision as of 12:44, 13 October 2014 by 73.162.128.239 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT017623 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
832 nt |
Genomic location |
chr11+:3819171..3846092 |
Exon number |
4 |
Exons |
3819171..3819212,3829524..3829545,3832480..3832654,3845500..3846092 |
Genome context |
|
Sequence |
000001 GGGAGCTCGG GCCAATCAGA GGGACGGCCC CAGAATGGCA TGGTAGATGG AACGCAGCTG AGAGGTCTGA CAAGATGTAC 000080
000081 CAGGTCCCAC TACCACTGGA TCGGGATGGG ACCCTGGTAC GGCTCCGCTT CACCATGGTG GCCCTGGTCA CGGTCTGCTG 000160 000161 TCCACTTGTC GCCTTCCTCT TCTGCATCCT CTGGTCCCTG CTCTTCCACT TCAAGGAGAC AACGGCCACA CACTGTGGGC 000240 000241 CATCCACGAA AATGCTTTCA TTGTGTTCAT TGCCTCATCC CTCGGGCACA TGCTCCTCAC CTGCATTCTC TGGCGGTTGA 000320 000321 CCAAGAAGCA CACAGTAAGT CAGGAGGTAC GGTCTATCCC TAGCGGGGGC TCCAAGGCAG CCCAGAAGAA AATCAAGGAC 000400 000401 ATCTGTCCTC AGGATTCGGG TAATGGTGAG GTGGGAACTG AGTTCTAATG GGAACCCTGG CAGAGGGGTG CTGGGGTTGG 000480 000481 GGCTGGGGCT TGGGAACAAA CTGAGGGTGG TTGGTCAGAA TCTAGGACTA TAGCACTGTG TTTGGGTAGT GTGGGAGACT 000560 000561 GGAGAATAGA AGAGATGGAG GCTGCAAATG GGGATAGAAT GAGGAGTCGC ATCTAGGCGG CAGTGAGTTA GGAACAGTGT 000640 000641 CAGAGGACTG GTCTGTCATA ATTCCAGCGC CCCACCCATG TACATGGGTT TCTTTTCCCC CACAGTATTT GGAGGTGGGG 000720 000721 TTGGTGGGTG ACTCCATGTA ACTTTCATAC TCCATCCCCC TGAAGTGGAA GCGGCAGGAA TACCACTGCT CCTCGGCCCA 000800 000801 TCACTCCCCC AGAGGCAGGG ACGTGAACAC AT |
Predicted Small Protein
Name | NONHSAT017623_smProtein_74:319 |
Length | 82 |
Molecular weight | 8820.4407 |
Aromaticity | 0.0987654320988 |
Instability index | 41.9765432099 |
Isoelectric point | 8.30230712891 |
Runs | 7 |
Runs residual | 0.0557599542147 |
Runs probability | 0.032099326217 |
Amino acid sequence | MYQVPLPLDRDGTLVRLRFTMVALVTVCCPLVAFLFCILWSLLFHFKETTATHCGPSTKM LSLCSLPHPSGTCSSPAFSGG |
Secondary structure | LLLLLLLLLLLLLEEEEEEEEEEEEEELLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLE EEEEELLLLLLLLLLLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLL LLLLLLLLLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTToooooooooooooooooo ooooooooooooooooooooo |