NONHSAT028127
Revision as of 07:51, 13 October 2014 by 73.162.128.239 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT028127 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(S) |
Length |
720 nt |
Genomic location |
chr12-:50031725..50032926 |
Exon number |
2 |
Exons |
50031725..50032303,50032786..50032926 |
Genome context |
|
Sequence |
000001 ATTACTTACG AGAGAAAAAT CCAAATTTCT TATTTTAGCA TTCAAGGCAC TTTACATGCA GGGCTCTACT TCCAAGCTGG 000080
000081 GGCATGTGGT TCCAGAGAAA GAGAGGATAC CTCAGGACAG TATGATACAT CTTACCTAAT Gtagaagaag agcaacaggc 000160 000161 catgtgtgat ggtaaatggc agctgacact tgcgacagta tcaagaaggc actaaggaat ggtgagaagg atgacttgcc 000240 000241 ctttctaaag tggcatctca gcttgagtct gcagaatgcc ttgcaaatcc agctcagtac tgctagataa tccatattga 000320 000321 caagagaagc taaagattca gattttctat gtgaagtttc ctggttttaa aatgttagca acaaattcca aatttttaca 000400 000401 gaacactgta caggccagaa agaacaatct gtgtgctacc agtttacaaT TAGCTATGCT TCTTCCTCCT CAGACCTGGC 000480 000481 ATGCCCTTTC CACCCCCTTG CCTTTGCTCT TAGTACCCCG TGTACACTCC AACCTCTTCC ACCTACAAAT TTCTAAATGC 000560 000561 ACAGTTCAAA TGTTAGTTCT TCAGATTcct gtctctgtaa taacacttgc ccctttgtat aacagttctc atgtatatct 000640 000641 tcctattaga ccatgagctc ctgtggtaga aattgtgtat tcattactgt atccctagtg tgcagtaaag gatcacagta 000720 |
Predicted Small Protein
Name | NONHSAT028127_smProtein_371:655 |
Length | 95 |
Molecular weight | 10508.4669 |
Aromaticity | 0.0531914893617 |
Instability index | 44.2308510638 |
Isoelectric point | 10.202331543 |
Runs | 14 |
Runs residual | 0.0201202590194 |
Runs probability | 0.0699964670554 |
Amino acid sequence | MLATNSKFLQNTVQARKNNLCATSLQLAMLLPPQTWHALSTPLPLLLVPRVHSNLFHLQI SKCTVQMLVLQIPVSVITLAPLYNSSHVYLPIRP |
Secondary structure | LLLLLHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLEEEELLLLLLEELLLLLLLHHHHHH HHHHHEEEEEELLLEEEEELLLLLLLEEEELLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLL LLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLL |
PiMo | oooooooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTiii iiiTTTTTTTTTTTTTTTTTTooooooooooooo |