NONHSAT053127

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT053127

Source

NONCODE4.0

Same with

,

Classification

antisense

Length

677 nt

Genomic location

chr17+:34190940..34191616

Exon number

1

Exons

34190940..34191616

Genome context

Sequence
000001 atgcggtgtt TCCAGTAAAG GCAGAGAATG TACTCTGTTC TGGCTTTCAG ACTTTCCTGG CTTTTCAGTC CAATGTCTTT 000080
000081 TCGGTTAGAC CAGGGAGATC TTCAGATTCT TCCTTCCCTA TCTTTTAGAT CCAGCTGCTC TTCGAAGAGG CCAAGGACAT 000160
000161 GGGATGGGTC ATGCTGCACA GTGGTGGCTG TGTCCTTACT GGATCTGACC CGCCATCCTA GCACCCCGGG GAGCCTCGTC 000240
000241 TGTGCCCACA TGCCACACAT CTCAGACCCT GTTTCCTTCT TTCCTGAACT CCAGCAGTTC TCAGACTCAC CACCTGCTGT 000320
000321 AGTGCCTCCA TGACAAACTT GTCACTGATG CGTAAGCATC CCAGAGCCTG CAGGAAGAGG GATGGAGGAA AGAGAAGGAA 000400
000401 ACTTGGACAT CATCCCCAGG AGTTACCATT CTCTGGATAC AGCTGGAGTT TGTGCTTGGA ATACCATCCC CACAACCACC 000480
000481 ATCACGTCAA GCAGCTTTTT ACTTTCCAGC TTGGCCAACT CCTGGCTGTA ACCACCCTCC TCTATCCTTG CCTCTTCTCA 000560
000561 CCTGTGCTGC ATAGAACTGC TCATCCTCTC TGGGAGATTC CAGGCTTTTT GTGAGTTCCT GCCCATCCAA GGCAGCCAGT 000640
000641 GGAAAGGAAG ACAGAGAAAA ATAAAGAATT TCAAACT
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Predicted Small Protein

Name NONHSAT053127_smProtein_329:613
Length 95
Molecular weight 11030.7915
Aromaticity 0.106382978723
Instability index 50.8021276596
Isoelectric point 10.0386352539
Runs 9
Runs residual 0.0330712303423
Runs probability 0.0470666745177
Amino acid sequence MTNLSLMRKHPRACRKRDGGKRRKLGHHPQELPFSGYSWSLCLEYHPHNHHHVKQLFTFQ
LGQLLAVTTLLYPCLFSPVLHRTAHPLWEIPGFL
Secondary structure LLLHHHHHLLHHHHLLLLLLLLLLLLLLLLLLLLLLLLEEEEEEELLLLLHHHHHHHHHH
HHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLL
PRMN -
PiMo -