NONHSAT057058
Revision as of 08:41, 13 October 2014 by 73.162.128.239 (talk)
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT057058 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3956 nt |
Genomic location |
chr18+:5236721..5245193 |
Exon number |
5 |
Exons |
5236721..5237302,5238083..5239048,5240647..5241256,5241698..5241890,5243589..5245193 |
Genome context |
|
Sequence |
000001 TATCAAAATG CATCTTGTTT ATTTGGCTTT TGAAACTGTT ATAACACAAC TTATAACATT GGAAATACAT TATTTTATTA 000080
000081 ATACAAAGTA GTTTTCATAG TAAAATACCA AATTAATTAA AAGGCAGAAT GAAACGTACC ATATACATGT AGACGACAAA 000160 000161 TGAAAACTGT CAAAGTATCC TTCTCTCTAA AAAGCCACAA ATTACGTTCT TTGAAGTAAG TATTGGGTTT TATTTCCTAA 000240 000241 ACTATACACA TCAATATCAC CTCCTGAAGC TTTTTACCCA GTTTCACGGT TGGTATTTCG GACATGCAAT GTTCCATGCT 000320 000321 GTCAAACTTG GAATGCCTCG TTTGGATACA GGGAGACAAA GACTTGGAGA CCCAGAAGCC TGAAAGTGGT TCTTGACCGA 000400 000401 CTTTGTCCAC TCAAATTAAG GCATCATGCA GCTGGTCATC ACTTACATTG CTGGTTGCAC GCAGGCACAC ACACACCAGT 000480 000481 GCTCACAGCC AGCACTTGTT AAGAATGGTT GAGCTGGACC AAATGGTATA CGTGTCTTTC ATCAATATAA ACATGGACTG 000560 000561 CATTCATCTG GACACGGGCC TTGCGGCCGG GAGGGACCGA GCGGGGAGCA AGGCCTGCGG GGAGGCGCAG GATGGACGCG 000640 000641 TTGGCTGTCA TGATGTAGGA CCTCCTGACC TAGAACCATG CCCGGCGCAG GGAGAACAAC GAGCTTACGG ACCGGGTGCG 000720 000721 GGGGCTGCTG TGCGAGAAAG CCTACCTGCT GGCCCGGGAG CGTTCGCCGG CCCACCTGGT GGCTTTCCCT GGACGTTTAA 000800 000801 CGGCGACTCC GCCCGGCCTC CCGACTTTTT GATGCAGGCG TTCTCTTACA TGACTTTCTT CGAGGCTAGA TTCTCGAAAG 000880 000881 ACATCCTGAA GGTGGCTTTC TTAATTAGCT GCCTCACCGG CTGGCGGAGC AGTTCGTAGT CGCCTACATC GAGAGGGAGA 000960 000961 GCCCCGTCCT GGCTCAGTAC TGGGGCTTCG TGGACGCGCT GTAGCGGGTC TTCGCCGTCG TGGGTAGGAA ACAGTCGGGC 001040 001041 CGGATCCCCG GTGTCTGGGG AGCGGCTGCC GGCCGGGCCC GCGCGAGCCG CTTCACTCCT ACAAGCCCGG CTCACTAGTT 001120 001121 CCAAGCTGCT GGACTTTGAC CCTCGCTGGG AAGCTTGATC GCCGCCTGTT CTCGCCAATC TCTATGCCTT TGCACTGCCC 001200 001201 AGCAACCCGG TCACTGCCCA GGACCTGTTA AAAGTTGAAT GGACCTCCCA GAATCACGCC GCTGCCACCG CCGTTTCTAG 001280 001281 AGACGGCTTT TGGCCACCTT TGAGAATCAG GGTCAAACTT GGAAGGGCCT GCATTTGTCA CACTTCCTCG GACACTAATT 001360 001361 TGGATAGTTC AGGCCCAGAG ACGGCTTCCC GGGTTAGTGT GCCTGACAAC ACTGAAGAAA AATTGTGACA TTTTCCTTCC 001440 001441 CCAGAATTAC TTCGTTTTAT ACATTTCACT TCTCTTCTGA AATCACAGCA ATGCCAGTTT GCGCCTTTTG GTCTGAGGAA 001520 001521 CGCAGGCCCT GGCCACTACC AGGAAAAAAA CCTTCTGGAT TTCAGCTTTG GCAAGCTTCC TCTGTTTCTG AGACACCTCC 001600 001601 ATCACCTGGG TTACAATCCC ATCCATGATT TTCCCCATCT CCAGGCATTT TTCATGGAAA GCTCCTCATG CTTTTTAATT 001680 001681 CCAGTTTATC CATTTGTGTG GCTTTAACCT CCACATCCAG GTCTTTCTGG CTAAACTGCA GTATATCCAC AATGGGGCCA 001760 001761 ATGGACACAT AAGGGAGGCC CTATCACAGG AACACGAACA CCCGGAGTCG CTAGAAATCA GATTCCACCG GCTTTGCTTC 001840 001841 AGGCCGACTT CCTAAGGAAG GCATGGTAGC ATCACAGATG CTGTTTGTCT CAGTTTCCTG AGAAGCCAGT TTCTTAGAGC 001920 001921 TGTCATTCAA GAGTGGGTCA AATTTGAGAT ATAAAAACCT TTCTCAAGGT AGACTCTTTG GCCCCTATGC CTAGTATGTC 002000 002001 AGCTGGGCCT CTGAAGCTCT CCTCTTTGAG GTCCTGGCAG GCTCTGGCCC CTGTTGAGAA GGGGAAGCAG TCATGTGAAC 002080 002081 TCATGTGCTG GAAGAATCCA CTCTACCCCT TCCCTGGCTT CTCTGCTGCA ATTTTTGTCT TTAAACGTAT TTTCAGGTAT 002160 002161 CCTTTGCACA TGGCCTGCTA TCAACAATCC TCTACAATGA TTCTCAGCAT CACCTAGGGA GCTTATGTAA AATCTCAAAT 002240 002241 TCCTGGGCCC TATCCCCAGA GTTTCTTATC AAGTAAGTCT GCATTGGGAT CTGAGGATTT GCATCTCTAA CAAAAATTCC 002320 002321 TAGGCGATGC TCACACTGTT GGTGTAAGGG TACAGTTTCC TTGATGGAGA ACTATCAAAG CAGTCAAAGC TATCAAAATA 002400 002401 AAAAAGAATT CTGATTGGGT GCAGTGGCTC ACACCTGTCA TTCCAGCACT TTGAGAGGCC AAGGTGGGCA GATCACATGA 002480 002481 GGCCAGGAGT TCAAGACCAG CCTGGCCAAC ATGGCAGAAA CCCCATCTCT ACTAAAAATA CCAAAATTAG CCGGGCATGG 002560 002561 TGGAACACAC CTGCAATCCC AGCTACTCGG GAGGCTGAGG CAAGAGAATC GCTTGAACCT GGGAGGCAGA AGTTGCAGTG 002640 002641 AAACAAGTTG GTGCCAATGC ATTCCAGCCT GGATGATGGA GCGAGACTCT GTCTCAAGAA AAAAAAAACA AAAACAAAAA 002720 002721 CAGAACTCTG CCTCATAGCG TCTTTTAAGT TATACACTGG ACCTATCCTT TCCTCACTGA CAGACATTTT AAAAATTTTT 002800 002801 TGGTAAGGCC TAGTTCATAT AAAATGTAAT CCAAGCCAAA AGTTAACAAG AATAAGGGGA GGAAAGGGGA CTCCAATAGC 002880 002881 AGAGAAAGGT ATTTACCTGG GATATACACT GCAAGAAAAT CAAAGCTATA AGAAACGTCC ATGAATAGTA GCCATAAGGC 002960 002961 ATCAGAGTGA TAAAATTCCT GTCCCTAGGA GGGAATATTG GAGTTTGCCA GAGAAACAGA ATGAGAGAGA CAGAGAGGTT 003040 003041 TATTGTAGGA ATTGGCTCAT ATGATTACGG AGGCTGAGAA GACCCACGAT CTGCCATCTG CAAGCTGGAG AATCAGGAAA 003120 003121 GCTGGAGGTG TAATTCAGTC AAGTCCAATG GCCAGAGAAG CAAGTGTACT GATATCCAAG AGCAGGAGAA AATAGATGTC 003200 003201 CCAGAACAAG CAGAGAGGCT GATTTTGTCC TTCCTCTGCC TTTTTGTTTC ATATGGGGCA CTGAATGGAC TGATGCCCAT 003280 003281 CCACATTAGT GAGGGTGGAT CTTCTTTACT CAGTCTACCA GTAGAAATGT CAATGACTTC CAGAAACACC CTCACCAACA 003360 003361 CACGTGGAAA TAATGTTTTA CCAGGTATCT GGGCATCCCT TGGTTCACTC AAGTTGACAC AAAATTAACC ATCACAGAAG 003440 003441 GAGACTGGCC TTACTCTGAA ATTAGGAAAC TAAAGAAGTG ACCAGAATGG AGACTAGGTA GAGACAACTA GTTCTCTACC 003520 003521 AAACATGTAC AGTTATTCGT TGGTATCTGA AGGGGATTGG TTCCAGGAAC TCTCAGGGAT ACCAAAATCT GCAGGTGCTC 003600 003601 AAGTCATTTA TATAAAATAT TACAGTATTT GCATATAACC TTTGCACATC TTCCATATAC TTTAAATCAT CTCTACATTA 003680 003681 CTTATAATAA TGAATGTGTA AATGCTATGA AAATAGTTAC TACACTATTG TTTATTTGTA TTTTTATTGA ATTGTTTTGG 003760 003761 GGTGGGGGGC AGCTGTATCT TTCTTAGTAA TAGAACCCCT GGTTTTAGCT GGGCACATGA CTGCCCTCAA TAAAGATTAA 003840 003841 AGTACCCCAG CCTTCCTTGA GATTGTGGCC ATGTGACTGA ACTTTAGACA GTGAGATATA AGCAGATATC TTCTGTGGCA 003920 003921 GTGTTAGGAA ACTATTAAAG ACAGTAAGAA CATTGC |
Predicted Small Protein
Name | NONHSAT057058_smProtein_2510:2737 |
Length | 76 |
Molecular weight | 8421.6433 |
Aromaticity | 0.0266666666667 |
Instability index | 61.8653333333 |
Isoelectric point | 10.1537475586 |
Runs | 10 |
Runs residual | 0.0156028368794 |
Runs probability | 0.0315845257022 |
Amino acid sequence | MAETPSLLKIPKLAGHGGTHLQSQLLGRLRQENRLNLGGRSCSETSWCQCIPAWMMERDS VSRKKKQKQKQNSAS |
Secondary structure | LLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHLLLLLLLLLLLHHHLLLHHHEELLL HHHHHHHHHHLLLLL |
PRMN | - |
PiMo | - |