NONHSAT060078

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT060078

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

5186 nt

Genomic location

chr18+:77822752..77830758

Exon number

3

Exons

77822752..77827308,77829798..77829906,77830238..77830758

Genome context

Sequence
000001 TTCTAATGTC ACAACTTCCA AAGCTGTCGG AAACCTGCAT TTAAGTGCAC CTGTCAAAGT CCTATGGTTG ATTATAAAAC 000080
000081 CACCTTTTAA AGAGGACCAA AACAAGACAA TTGTCTGTGG ATGACAAAAG TCTTAGGCCA GCCACTATTA AAGTCAAAAT 000160
000161 TGATAATGAA ATTTGGTTAT TTCTGTGGCA TATAACAATG TTATGTAACA ATTTTCACTA TTAATAACAT ACACTAAGTC 000240
000241 ATATCAGAAT TATAGAACTT TCTTATAATT TTGGAACACA TACCAATAAC ATATTTATTC AAATACAGCC CAAAGTTAGC 000320
000321 CAAACATTAT TTCATATTTG ACAATGCTTC CTGTATGATT TTTATACCAA ATAAGCCAAA TCTCACCTTT ACATTAGTGT 000400
000401 ACTATTAATG CTAAACCCTA ATCTTAATAA AACCTTATAG ACAAATGTAT TTAATCTTAA TCAGTTTGAC CATAAGGTAA 000480
000481 GATTCTTTTT TTGAGACAGA GTTTTGCTCT TGTTGCCCAG ACTGGAGTGC AGTGGCACAA TCTTGGCTCA CTGCAACCTC 000560
000561 TGCCTCCTGG GTTCAAGCAA TTCTCCTGCC TCAGTCTCCT GAATAGCTGG GATTGCAGGT GCCCACCACC ATGCCCAGCT 000640
000641 AATTTTTGTA TTTTTAGTAG AGACAGGGTT TCACCATGTT GGCCAGGCTG TTCTTGAACT CCTGACCTCA GGTGATCCAC 000720
000721 CTGCCTGGGC CTCCCAAAGT GCTGGGCTTA CAGGCATGAG CCACCATGCC CGGCCCCTAA GGTAAGATTC TTATACCTTT 000800
000801 TATAACCCTT TACAATTTTT TTTTGTTAAA GAGTGGATTA TAAGCAGGAT TTTGCTTTAA GAAAAACCTG TTATGTTTTT 000880
000881 ATTCCTATGT TTAATTTACA GGAAAACTGA ATAATACCCC TTTAACTTTA GCCAATGTCC ATACACAGAA TTTCTTTTAC 000960
000961 AATTAATTTT TTACAAACCT TCCACAACTT GTTCAAACCT TTAGCTTGAT CCTAACTTAA AACAATACTT TAACCCTTTA 001040
001041 ATCTAGGCAG AAACATCCAC ATTCCCATGA CTTCTTATAA TCTTTACCAA AAGTATATTC TACTTTCCTT TTCGCCTTGG 001120
001121 GTGTGGAACT ATTTCTTGCG TAGTCTCAAA TACAGTGTTA GCTTTTAGCA CCTTTTGCTT TTGGTGAAAA TCTTGGTAAG 001200
001201 TCAGGGATTT TTCATTATGT GCCAGGTGTG GGGCCTAGCC TGGGACCCAC CAGACAGAAG TGCAGATGAG GGCAGACCCT 001280
001281 CCCGCATGGC TAGGGTGTGG CTCTCCACAT GTCCCCAGGC CTTAGCTAGA ATCTAATGTC CCCAAGCTAG GTAAATTGGA 001360
001361 CAATTTTCAA AAGTCAAATA AGCAGTTTAT GACCTTAAAG CATTGAGTAA ACTTCATATC CTACCTGCAT AATTTAGACC 001440
001441 AAATGTCTTT ATTTTACCAA TAATCTTTAA AACTTTTTAT TTCCCAAAGA TTACTTCAGT CACATGAGCT AAATAAAAGT 001520
001521 TATTACACTA TTTACTTTTC TGACAAAATA TTTGATTTAA GCTGTTATTG TAATTAAACC AATTAATCAA AACTCTTTTA 001600
001601 TATTACACAC ACAACACATA TAAATAGAAG ACGAAGGACT CATCCCCTAA GACAGGAATT GGGCCCTAAA CACGGGCCGC 001680
001681 CATTGTGAAA AAAGAAAGCA CAACCACATG GTTACAAGTT CAAGCTCCCA GGGACCTACA AGACAAGAGG GAAACCTCAT 001760
001761 CCAGTTTCGT TTTTTTTTCA GGGACCTGTA GCAACGTTTA TAACTGACCA GTTTGCTGGG GCATCTTGAA CAGTGGGCTT 001840
001841 ATAGGAGTCC CGCTCTCCGT GGTGGTTCCC ACATCCACTC AGGGGTGTCT GGGTTCTCAG GGACACCTGC TTCTTGCTGG 001920
001921 GCACCGTGGC CTGGACTTAC CACCTGGCCT CCAGGGTTCA GGCCGTGGAC ATCTGCCCTG AAGTAGCCTG TGGGGACTGT 002000
002001 CACGCCACAG TTAATGTCCT GGGTCCTTGG CATCAAGTCT GTAAAGCTGT CTTTGCTTTC TCAACAGCAC TGTGTGGGAG 002080
002081 TTGGCTGGGC CTCGGCGACT GTTGCCTGTC TCTGTCGTCA CTAGGATGTT AGCGGGAAAT GGTGGCGTTC TCTCCACGCA 002160
002161 GTTGCTGCTT TGCCTGTGGA TCATGTTTTT CTTCTCCCTA TTGATCAGCA CACATCACAG ATTTGATTTG AGACGGAGTC 002240
002241 TTGCTCTGTC ACCCAGGCTA GAGTGCAGTG GCGCGATCTC GGCTCACTGC AACCTCTGCC TCCCGGGTTC AAGTGATTCT 002320
002321 CCTGCCTCAC CTCCCGAGTA GCTGGGATTA CAGGCACCCG CCACCGCACC CGGCTAACTT TTGTATTTTC ACTAGAGACA 002400
002401 GAGTTTCACC ATCTTGGCCC GGCTGGTCTC GAACCCCTGA CCTCGTGATT CACCTGCCTC AGCCTCCCAA AGTGCTGGGA 002480
002481 TTACAGGCGT GAGCCACTGG GCCCAGGCTA TTTTTTAATT AAGTTAATAG TAAGTTATAA ACAACACATT ATAAATAATA 002560
002561 TAAATTACAA ATAATACATT AATAAATTAA TAATACAATT TTTTTAATTT TAATTTTTAA CATGTTAGGC ATTGAGGTAA 002640
002641 GTACAGTGGA TAAACACCCA TCACGCACAG AAAAAAGGAA TGAGGAAGGC ACGTTTGCCA CACATCTGCT CCCTGCTCTG 002720
002721 GGAGCCCTCC CTGTTCCTTG TGGTTTAATC TTCTAGAACT CTGATGGCGG CATTACTGTG AGTTTTGCTT CTCCAGAAGG 002800
002801 CTTCTTCTTA AAGCTTTCTG AGCACTGGTA CTCACAAAAC TCTCCCCTGG TGAAATGAAA ACACACACAG GCGGGAAGTG 002880
002881 AGCCAGTTCT CAACTTGAGT GGCTTCTCCC CAATGCATGC TTTTTAAAAC TTCCAGCGTT TTCTAATCAG ATCTGGGCAA 002960
002961 TATTGTGGCA TCACCTCCTG CATCCGCCTT TACCCTCCTC ATCCTGTTCT TTGTCCTAAA AAAGGCTGTG GGACCAGCCG 003040
003041 GTCTCAGAGC CCAGGTGGAG CCTCAGCTCC CCTGCGACCT GTGCTTTTCC GAGGGTGCCG CCTGGCAGGG CCTGCGTCAG 003120
003121 GGTCACCCTG GCAGGACCAG AGGTCAAAGG TCACCCTGGC CAGACCAGAG CCTCGGAGGT CCCTGGGCTG CAGTGAGGGA 003200
003201 GATCAGAGGT CGTGGGCTGG GGCCAGCCAA GAAGAGTTGG GGGCAGCAGG GAGCACAGTC TGGCCCTTGA CATTCCCACC 003280
003281 TGCTTGTCTG CTCCACAGGA CAGTGGTCAG GAGGGCCCGG GAGTGAGTGT GCAGGGTCCT GGGTGGGCTC CACATGCATC 003360
003361 TCATGGGGCA GCAGGACCCC GATGAGGGCA CCCACAGGGT GGGAGGGTGG AGAGCTCTGC TAACCAAGAT GGGGAGGCCC 003440
003441 GGGTCAGGGC CAGCTCTGCC TCCGAGGCTA TATCCAGCAG CCTTCGGCCT TGCCATGTGA GCTCGTGGAA GCCCATGCAG 003520
003521 TGTGTGCCCC TCTGGTTGTA TCTGGTGAGG CCTTGTACAG GGATGAGCTC GGACCTGAGT TTCAGTCAGC AGAAAAATAA 003600
003601 GTTTCTGGAG GACTTGATTC TTTTCAGGGC ATTCAGTTCT GTGTTTCCCC TGTACCCAAG ATGAGATTTC TAATACAGTG 003680
003681 ATGTGTTTAA AATTAACCAT ATCTCCAGGG CAGCATCCAG CTGTGAGCCT TGGTGAAGAA GGTCCTGGAG ACGGGAGTGA 003760
003761 ATGGGGTGGG GCCATCCTTG GACACACAGG AGGTTCCTGG GCCCTGGGGA TGTGTCCGTG GGTGCTGAGG AGATGAGGGG 003840
003841 TGCATGCTGT CTGGGTTCTT TTCTCTCCGC TCCATCTCTT GCAAGGTGAG GAGGGGTCTG CTGTTGATTC CTGTCCTGCC 003920
003921 TGTGGTGCTG AAGCTCCCCT CAAGCTGGGC TTTCTCAGCA GGGAGAGTTT CTTCATTGCT TGTAGAAGTT TATGCTTCCC 004000
004001 TGCTTTAGTC TGGGCAAATT GCTCCCCAAA GGACATGAGA GCTGAGGCTG TGTTTTTAGA GATAGGGAGC AGCTACAGGG 004080
004081 ACTTAGCTTC TTAATGAATT AATTCACAAA TCTCAGCAGC TCCTGGCGAT AAGATATGCA GAGCTGATGG CAGGGAGGAC 004160
004161 ACGAGGTGGC TCAAAGGGAA CTAAGCTTTG CGTGTGAATT TAGGGTGAGG CTAAGAGCCC TCCAGGCAGG CAGAGGAGGG 004240
004241 TGCTGGAGGG AGGAGAGGCC GGTATAGGAC CTTCGCCTTG AAGAAAGCAC CCAGGTAAGG CTGGGCAGTG TTGGGAGAGA 004320
004321 GCTTTAGTTG ATCTTTTTGT TTTTGGATGT TTTCTGATGG TCCTCTATGG CTTTGGAAAA TGGAGAGAAG ACAGAGAGGC 004400
004401 GTAGGCACTG AAGGCTGCAG CTGTGATTGA GGATCACGAC GCCTGTTGGG GCTGCTCACC TGCCTAGGCC TGGGTGAGGA 004480
004481 GGTGCTGGGG CCTGGCTGCA CACACGTTCC TGCCCCAGAA CTCAGTTGGG GGCTCGGAGC AGGAGAAGCT GCACACGGTG 004560
004561 GATGAAGACC TGATCATTGA AGTTCACCAG TTATTTTTCT CAAGAATGTG AATAACAATG GGATTTGCAC TCATTATATT 004640
004641 TTTAGAATGG CTTCGCATAA TTTTCAGTTG GGCGTGGTGG CTCACGTCTG AAATCCCAGC ACTGTGGGAG GCAGAGGCGG 004720
004721 GCAGATCACG AGGTCAGGAG TTCGAGACCA GCCTGACCAA CATGGTGAAA CCCCGTCTCT ACTAAAAATA CAAAAATTAG 004800
004801 CCAGGTGTGG TGGTGGGTGC CTGTAATCCC AGCTACTCAG GAGGCTGAGG CAGGAGAATT GTTTGAACCC AGGAGGCGGA 004880
004881 GGTTGCAGTG AGCCAAGATC ATGCCACTGC ACTCCAGCCT GGGTAACAGA GTGAGACTCT GTCTCAAAAA AATAAAAATA 004960
004961 AATAAAAATA AACAAATTAA TTAATTTTAA AAAAGAAATG ACCTATTTGG AAACCAAATT TTCTTTTTGG AAGGCCCCCA 005040
005041 TTTTGTGTTC AGTGAAAAAT TAGTTGGCAA GACATGGACT TCTAATCAAG TTATTTTTGT AGTTGTGCTC AGAATATCTG 005120
005121 TGGAATATTA GCTGACGCAG AGTAGATTTT TCACGTTAGA TATTGGAATA AAGAGAGTTG CTCCTT
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Predicted Small Protein

Name NONHSAT060078_smProtein_3680:3835
Length 52
Molecular weight 5274.0023
Aromaticity 0.0588235294118
Instability index 43.2039215686
Isoelectric point 5.98773193359
Runs 7
Runs residual 0.0169869928169
Runs probability 0.021412168471
Amino acid sequence MCLKLTISPGQHPAVSLGEEGPGDGSEWGGAILGHTGGSWALGMCPWVLRR
Secondary structure LEEEEEELLLLLLLLLLLLLLLLLLLLLLLEEEELLLLHHHLLLLLLLLLL
PRMN -
PiMo -